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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/artemis">Debian Med / artemis</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/artemis/commit/8e14e3a5362d69719065c869d08a289e0650afb9">8e14e3a5</a></strong>
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<span>by Andreas Tille</span>
<i>at 2018-08-05T04:26:21Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Class FTPSeekableStream should not be excluded
</pre>
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<h4>2 changed files:</h4>
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#ed6c136d232b2843578317ef9031c55efb6c4a7a">
debian/patches/samreader.patch
</a>
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/artemis/commit/8e14e3a5362d69719065c869d08a289e0650afb9#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -6,7 +6,8 @@ artemis (17.0.1+dfsg-1) UNRELEASED; urgency=medium</td>
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"> * debhelper 11</span>
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> * Point Vcs fields to salsa.debian.org</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> * Standards-Version: 4.2.0</span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"> TODO: Fix build</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> * d/rules: use dh_auto_build</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> * Class FTPSeekableStream should not be excluded</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Sat, 17 Mar 2018 11:41:38 +0100</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"></span>
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<li id="ed6c136d232b2843578317ef9031c55efb6c4a7a">
<a href="https://salsa.debian.org/med-team/artemis/commit/8e14e3a5362d69719065c869d08a289e0650afb9#ed6c136d232b2843578317ef9031c55efb6c4a7a"><strong>debian/patches/samreader.patch</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="125" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -125,14 +125,6 @@ Last-Update: 2016-12-07 23:37:52 +0000</td>
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<pre style="margin: 0;"> <span id="LC125" class="line" lang="diff"> cnt[0] = (cnt[0] / (((float) mappedReads[j] / 1000000.f) * (fLen / 1000.f)));</span>
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<pre style="margin: 0;"> <span id="LC126" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/uk/ac/sanger/artemis/components/alignment/BamView.java</span></span>
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<pre style="margin: 0;"> <span id="LC127" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/uk/ac/sanger/artemis/components/alignment/BamView.java</span></span>
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<pre style="margin: 0;">-<span id="LC128" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -149,7 +149,6 @@ import uk.ac.sanger.artemis.sequence.Mar</span></span>
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<pre style="margin: 0;">-<span id="LC129" class="line" lang="diff"> import uk.ac.sanger.artemis.sequence.NoSequenceException;</span>
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<pre style="margin: 0;">-<span id="LC130" class="line" lang="diff"> import uk.ac.sanger.artemis.util.Document;</span>
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<pre style="margin: 0;">-<span id="LC131" class="line" lang="diff"> import uk.ac.sanger.artemis.util.DocumentFactory;</span>
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<pre style="margin: 0;">-<span id="LC132" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-import uk.ac.sanger.artemis.util.FTPSeekableStream;</span></span>
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<pre style="margin: 0;">-<span id="LC133" class="line" lang="diff"> import uk.ac.sanger.artemis.util.OutOfRangeException;</span>
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<pre style="margin: 0;">-<span id="LC134" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC135" class="line" lang="diff"> /**</span>
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<pre style="margin: 0;"> <span id="LC128" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -186,15 +185,15 @@ public class BamView extends JPanel</span></span>
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<td class="diff-line-num old_line" data-linenumber="137" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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129
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<pre style="margin: 0;"> <span id="LC129" class="line" lang="diff"> private Bases bases;</span>
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138
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<pre style="margin: 0;"> <span id="LC130" class="line" lang="diff"> private JScrollPane jspView;</span>
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