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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/trnascan-se">Debian Med / trnascan-se</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/trnascan-se/commit/1ea1873ab9df7660ae94b20a120be152bc3abda0">1ea1873a</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-08-04T13:18:42Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Don't try to start the arch dependant executable in arch all builds
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/trnascan-se/commit/3828758d4a8ad46a7abbe6fb2b5a7b37fbd1306e">3828758d</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-08-04T13:19:27Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Point Vcs fields to salsa.debian.org
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/trnascan-se/commit/84bf5ccebb5a54952f7639901909f06c9adad23a">84bf5cce</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-08-04T13:19:27Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Standards-Version: 4.1.5
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/trnascan-se/commit/63ec4da1099540d1e46ec2d1435ade063a687afa">63ec4da1</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-08-04T13:36:23Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Clean up properly
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/trnascan-se/commit/eaae159aefea0f350452cb8485905ec725f7023e">eaae159a</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-08-05T00:00:55Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix paths in d/copyright
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/trnascan-se/commit/e33f8fc88e29875c62e7a3d0f5049d8c984a9673">e33f8fc8</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-08-05T00:02:12Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">hardening=+all
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/trnascan-se/commit/cf542bfba5861823754ef44ef90763fd0ecdb294">cf542bfb</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-08-05T00:16:38Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Remove unused paragraph
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/trnascan-se/commit/c797f0a9c217f1a6264ce7ddfbb853eb9ca483bf">c797f0a9</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-08-05T00:22:49Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Check existence of files before calling chmod on them to fix arch indep builds
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/trnascan-se/commit/7c76a10078b51e0f913f9e11dfcd8c97de25c4ab">7c76a100</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-08-05T00:27:21Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
</li>
</ul>
<h4>7 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#f5f51601866c86e59a004bd93fa415f5675be8c5">
<span class="new-file">
+
debian/clean
</span>
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
</a>
</li>
<li class="file-stats">
<a href="#7ed917a8d04c21f0e50e28621cc0b10b3bb2e1c8">
<span class="new-file">
+
debian/patches/chmod_only_if_exists.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/trnascan-se/compare/fecf4b04327f309793013f3b5a8070c49995ccb8...7c76a10078b51e0f913f9e11dfcd8c97de25c4ab#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<td class="diff-line-num new new_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">trnascan-se (2.0.0-2) unstable; urgency=medium</span>
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<td class="diff-line-num new new_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Team upload.</span>
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<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * Check existence of files before calling chmod on them to fix arch indep</span>
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<td class="diff-line-num new new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> builds</span>
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<td class="diff-line-num new new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> Closes: #904444</span>
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<td class="diff-line-num new new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> * Point Vcs fields to salsa.debian.org</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> * Standards-Version: 4.1.5</span>
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<td class="diff-line-num new new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> * Clean up properly</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> * Fix paths in d/copyright</span>
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<td class="diff-line-num new new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> * hardening=+all</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"></span>
</pre>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Sun, 05 Aug 2018 02:22:58 +0200</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"></span>
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<td class="diff-line-num new_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext">trnascan-se (2.0.0-1) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> [ Steffen Moeller ]</span>
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<li id="f5f51601866c86e59a004bd93fa415f5675be8c5">
<a href="https://salsa.debian.org/med-team/trnascan-se/compare/fecf4b04327f309793013f3b5a8070c49995ccb8...7c76a10078b51e0f913f9e11dfcd8c97de25c4ab#f5f51601866c86e59a004bd93fa415f5675be8c5"><strong>debian/clean</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">tRNAscan-SE.conf</span></pre>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">Source: trnascan-se</span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="plaintext">Section: non-free/science</span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext">Priority: optional</span>
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org></span>
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<td class="diff-line-num new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">Uploaders: Afif Elghraoui <afif@debian.org></span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">Section: non-free/science</span>
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5
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">XS-Autobuild: no</span>
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<td class="diff-line-num new old_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">Priority: optional</span>
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6
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<td class="diff-line-num new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">Build-Depends: debhelper (>= 11)</span>
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<td class="diff-line-num old old_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
7
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<td class="diff-line-num new_line old" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext">Standards-Version: 4.1.3</span>
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<td class="diff-line-num new old_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">Standards-Version: 4.1.5</span>
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<td class="diff-line-num new old_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/trnascan-se</span>
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<td class="diff-line-num new old_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/trnascan-se.git</span>
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<td class="diff-line-num old_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
8
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<td class="diff-line-num new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
11
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">Homepage: http://lowelab.ucsc.edu/tRNAscan-SE</span>
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<td class="diff-line-num old old_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
9
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<td class="diff-line-num new_line old" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext">Vcs-Git: https://anonscm.debian.org/git/debian-med/trnascan-se.git</span>
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<td class="diff-line-num old old_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
10
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<td class="diff-line-num new_line old" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext">Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/trnascan-se.git</span>
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<td class="diff-line-num old_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
11
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<td class="diff-line-num new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
12
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"></span>
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<td class="diff-line-num old_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
12
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<td class="diff-line-num new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext">Package: trnascan-se</span>
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<td class="diff-line-num old_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
13
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<td class="diff-line-num new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext">Architecture: any</span>
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<td class="diff-line-num old old_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
14
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<td class="diff-line-num new_line old" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext">Depends:</span>
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<td class="diff-line-num old old_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
15
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<td class="diff-line-num new_line old" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext"> ${shlibs:Depends},</span>
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<td class="diff-line-num old old_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
16
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<td class="diff-line-num new_line old" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext"> ${misc:Depends},</span>
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<td class="diff-line-num old old_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
17
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<td class="diff-line-num new_line old" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext"> ${perl:Depends},</span>
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<td class="diff-line-num old old_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
18
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<td class="diff-line-num new_line old" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext"> trnascan-se-common (= ${source:Version}),</span>
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<td class="diff-line-num old old_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
19
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<td class="diff-line-num new_line old" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="plaintext"> infernal (>= 1.0),</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext">Depends: ${shlibs:Depends},</span>
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16
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> ${misc:Depends},</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> ${perl:Depends},</span>
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18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> trnascan-se-common (= ${source:Version}),</span>
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> infernal</span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext">Description: detection of transfer RNA genes in genomic sequence</span>
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21
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> tRNAscan-SE identifies 99-100% of transfer RNA genes in DNA sequence while</span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> giving less than one false positive per 15 gigabases. Two previously described</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -30,9 +30,8 @@ Description: detection of transfer RNA genes in genomic sequence</td>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext">Package: trnascan-se-common</span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext">Architecture: all</span>
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="plaintext">Depends:</span>
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<pre style="margin: 0;">-<span id="LC34" class="line" lang="plaintext"> ${misc:Depends},</span>
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="plaintext"> ${perl:Depends}</span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="plaintext">Depends: ${misc:Depends},</span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="plaintext"> ${perl:Depends}</span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext">Description: detection of transfer RNA genes in genomic sequence (common files)</span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"> tRNAscan-SE identifies 99-100% of transfer RNA genes in DNA sequence while</span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> giving less than one false positive per 15 gigabases. Two previously described</span>
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<a href="https://salsa.debian.org/med-team/trnascan-se/compare/fecf4b04327f309793013f3b5a8070c49995ccb8...7c76a10078b51e0f913f9e11dfcd8c97de25c4ab#adb7f75f79e3bb85eb62912a2904c5d24af878fb"><strong>debian/copyright</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -11,23 +11,23 @@ Copyright:</td>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> 2017 Brian Lin</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext">License: GPL-3.0+</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext">Files: dbmalloc.h</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext">Files: <span class="idiff left right">src/</span>dbmalloc.h</span>
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15
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15
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext">Copyright: 1990-1992 Conor P. Cahill</span>
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16
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16
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext">License: Cahill</span>
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17
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> You may copy, distribute, and use this software as long as this</span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> copyright statement is not removed.</span>
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19
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext">Files: gnuregex.*</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext">Files: <span class="idiff left right">src/</span>gnuregex.*</span>
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21
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21
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext">Copyright: 1985, 1989-1993 Free Software Foundation, Inc.</span>
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22
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext">License: GPL-2.0+</span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="plaintext">Files: sqio.c</span>
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24
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext">Files: s<span class="idiff left right">rc/s</span>qio.c</span>
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25
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25
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext">Copyright:</span>
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26
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"> 1990 Don Gilbert <gilbertd@bio.indiana.edu></span>
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27
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> 1992-1996 Sean R. Eddy</span>
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28
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext">License: GPL-2.0+</span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="plaintext">Files: trnascan.c</span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext">Files: <span class="idiff left right">src/</span>trnascan.c</span>
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31
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext">Copyright: 1991 The Regents of the University of California</span>
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32
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext">License: UC</span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> This software was produced by the Los Alamos National Laboratory,</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="41" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="41" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -41,10 +41,6 @@ License: UC</td>
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext"> express or implied, or assumes any liability or responsibility</span>
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext"> for the use of this software.</span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC44" class="line" lang="plaintext">Files: Cove/*</span>
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<pre style="margin: 0;">-<span id="LC45" class="line" lang="plaintext">Copyright: 1993-1994 Sean R. Eddy</span>
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<pre style="margin: 0;">-<span id="LC46" class="line" lang="plaintext">License: GPL-2.0+</span>
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<pre style="margin: 0;">-<span id="LC47" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext">Files: debian/*</span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="plaintext">Copyright: 2015-2018 Afif Elghraoui <afif@debian.org></span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="plaintext">License: GPL-2.0+</span>
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<li id="7ed917a8d04c21f0e50e28621cc0b10b3bb2e1c8">
<a href="https://salsa.debian.org/med-team/trnascan-se/compare/fecf4b04327f309793013f3b5a8070c49995ccb8...7c76a10078b51e0f913f9e11dfcd8c97de25c4ab#7ed917a8d04c21f0e50e28621cc0b10b3bb2e1c8"><strong>debian/patches/chmod_only_if_exists.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff">Author: Andreas Tille <tille@debian.org></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff">Last-Update: Sat, 04 Aug 2018 15:15:12 +0200</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff">Bug-Debian: https://bugs.debian.org/904444</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff">Description: Check existence of files before calling chmod on them to fix arch indep builds</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/Makefile.am</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/Makefile.am</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -52,15 +52,15 @@ tRNAscan-SE.conf: tRNAscan-SE.conf.src M</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"> bin/sstofa: src/sstofa.in Makefile</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"> $(do_subst) < $(srcdir)/src/sstofa.in > bin/sstofa</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- chmod +x bin/sstofa</span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ if [ -x bin/sstofa ] ; then chmod +x bin/sstofa ; fi</span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"> bin/fasta2gsi: src/fasta2gsi.in Makefile</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"> $(do_subst) < $(srcdir)/src/fasta2gsi.in > bin/fasta2gsi</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- chmod +x bin/fasta2gsi</span></span>
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18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ if [ -x bin/fasta2gsi ] ; then chmod +x bin/fasta2gsi ; fi</span></span>
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"> </span>
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20
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"> bin/EukHighConfidenceFilter: EukHighConfidenceFilter.in Makefile</span>
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21
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"> $(do_subst) < $(srcdir)/EukHighConfidenceFilter.in > bin/EukHighConfidenceFilter</span>
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22
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- chmod +x bin/EukHighConfidenceFilter</span></span>
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23
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ if [ -x bin/EukHighConfidenceFilter ] ; then chmod +x bin/EukHighConfidenceFilter ; fi</span></span>
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24
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="diff"> </span>
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25
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="diff"> # copy data libraries</span>
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26
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="diff"> install-data-hook:</span></pre>
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<li id="bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
<a href="https://salsa.debian.org/med-team/trnascan-se/compare/fecf4b04327f309793013f3b5a8070c49995ccb8...7c76a10078b51e0f913f9e11dfcd8c97de25c4ab#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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1
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">pkg-data.patch</span>
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2
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">confdir.patch</span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">chmod_only_if_exists.patch</span></pre>
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<a href="https://salsa.debian.org/med-team/trnascan-se/compare/fecf4b04327f309793013f3b5a8070c49995ccb8...7c76a10078b51e0f913f9e11dfcd8c97de25c4ab#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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1
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">#!/usr/bin/make -f</span>
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2
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">export DEB_BUILD_MAINT_OPTIONS=hardening=+all</span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"></span>
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3
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5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">%:</span>
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4
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6
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"> dh $@</span>
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5
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7
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"></span>
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