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<h3>
Andreas Tille pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/cnvkit">Debian Med / cnvkit</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/cnvkit/commit/8059fff89f675485804be5b4b9495615c051b2f9">8059fff8</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-08-13T10:57:39Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 0.9.5</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">
.travis.yml
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</li>
<li class="file-stats">
<a href="#0398ccd0f49298b10a3d76a47800d2ebecd49859">
LICENSE
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</li>
<li class="file-stats">
<a href="#561b88e19de321ca62c7590bbb350765fb110905">
README.rst
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</li>
<li class="file-stats">
<a href="#42d036b285f793fa4706218270f28c4e0af74569">
cnvlib/_version.py
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</li>
<li class="file-stats">
<a href="#0dd6dacf3a32d43e909fde3613a86d002941bcc6">
cnvlib/autobin.py
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</li>
<li class="file-stats">
<a href="#3c97ce14774c9dcaaf77c07a55b41a9bb29613dd">
cnvlib/cnary.py
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<li class="file-stats">
<a href="#37071ebf7e39e57e21ff893de63e92a9b7f6fcba">
cnvlib/commands.py
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<li class="file-stats">
<a href="#e0b9b6c135ef19da5b4d4718f3f11edff2251b58">
cnvlib/export.py
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<li class="file-stats">
<a href="#d5de4c64ce69f26a9edcef51de9217f0782e4cd5">
cnvlib/import_rna.py
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<li class="file-stats">
<a href="#e302820aded8fa24cbe10b7982e8c81159ed4875">
cnvlib/reference.py
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<li class="file-stats">
<a href="#53cf62a516f30d088c59651d6a2d958620dd5fbc">
cnvlib/rna.py
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<li class="file-stats">
<a href="#2b33ccf937d24b40fb7480b3013a15978923df38">
cnvlib/segmentation/__init__.py
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<li class="file-stats">
<a href="#c160ff0d2f0f8d012f4020300257a1bfd42deb00">
cnvlib/segmetrics.py
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<li class="file-stats">
<a href="#8c84e9d227297e00b270e1d1259a188a27c7d95d">
cnvlib/smoothing.py
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<li class="file-stats">
<a href="#ed8b67b08be8a60cb4c760756e5303a25de5c7e4">
<span class="new-file">
+
cnvlib/ztest.py
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<li class="file-stats">
<a href="#4455ea4c28397fb0744fe9965b258e3be7c5bf78">
devtools/conda-recipe/meta.yaml
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<li class="file-stats">
<a href="#1bbcd8980c541f52998ccf56da078edd2ca6a2d0">
doc/index.rst
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<li class="file-stats">
<a href="#9de64de0c6a31e3d551cbbbab0b84ae8d4b2a60d">
doc/pipeline.rst
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<li class="file-stats">
<a href="#8ffde13df31f212345642ccfa4755f3bd99e7e61">
docker/Dockerfile
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<li class="file-stats">
<a href="#e3f7c43ef0b392c0d1361293625fd6dcb51880dc">
scripts/cnv_annotate.py
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<li class="file-stats">
<a href="#9fa936d3ed63d2a4fe12751cc15f211fdcc8a505">
scripts/cnv_expression_correlate.py
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</li>
<li class="file-stats">
<a href="#37bfecdf9dbf82cca9dccd1c879453be84e4baab">
scripts/cnv_ztest.py
</a>
</li>
<li class="file-stats">
<a href="#72f766b28999fd43676a90ab81386b1377cb1d02">
<span class="new-file">
+
scripts/snpfilter.sh
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</a>
</li>
<li class="file-stats">
<a href="#8e2edce0d507e1297474f25c00cae94258db38d8">
setup.py
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</li>
<li class="file-stats">
<a href="#c8e0ab1b5fb1e9df495f7ab12a38316201fb89ec">
skgenome/gary.py
</a>
</li>
<li class="file-stats">
<a href="#af4aa75c1234fedbcee4a101a5adfd3e5b9a9570">
skgenome/intersect.py
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<li class="file-stats">
<a href="#fcbc60e2d8cf298d97237ae8dd207f0f0eb8ba25">
skgenome/tabio/__init__.py
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</li>
<li class="file-stats">
<a href="#5bb655e42cff74f6231cf30978df1b1d1123f09b">
skgenome/tabio/bedio.py
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<li class="file-stats">
<a href="#6929524e65a48c79facb82920c473f653c6df5b3">
<span class="deleted-file">
−
skgenome/tabio/simplevcf.py
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</li>
<li class="file-stats">
<a href="#91f24998b33057769876b12566e54d75ff87188d">
<span class="new-file">
+
skgenome/tabio/vcfsimple.py
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</li>
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<h5>The diff was not included because it is too large.</h5>
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