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<h3>
Andreas Tille pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/dindel">Debian Med / dindel</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/dindel/commit/e3768d2368ceaf98c7bd8e5523969340637110c4">e3768d23</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-08-13T11:46:32Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.01-wu1-3+dfsg</pre>
</li>
</ul>
<h4>30 changed files:</h4>
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<li class="file-stats">
<a href="#a5cc2925ca8258af241be7e5b0381edf30266302">
<span class="new-file">
+
.gitignore
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<li class="file-stats">
<a href="#7445606fbf8f3683cd42bdc54b05d7a0bc2dfc44">
<span class="new-file">
+
.gitmodules
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</li>
<li class="file-stats">
<a href="#c1f5f5ab64c0932e4fcfc0e08568b61c01f182f1">
DInDel.cpp
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<li class="file-stats">
<a href="#cf618b6c8afc54f60eedbe45519f79fad8302474">
Faster.cpp
</a>
</li>
<li class="file-stats">
<a href="#2887a025d7a5c6d1dd389bf7396788e4978eaa5e">
GetCandidates.cpp
</a>
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<li class="file-stats">
<a href="#28c58eeb4d814d34b0f047b0ab699a9928d03c2e">
Haplotype.hpp
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<li class="file-stats">
<a href="#8568304ac3db841d35168f8545a26138ca231a95">
HaplotypeDistribution.hpp
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<li class="file-stats">
<a href="#0398ccd0f49298b10a3d76a47800d2ebecd49859">
<span class="new-file">
+
LICENSE
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<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
Makefile
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<li class="file-stats">
<a href="#aface53322f1d4a3ebb7c105872b889135bc7236">
OutputData.hpp
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<li class="file-stats">
<a href="#69e27356ef629022720d868ab0c0e3394775b6c1">
<span class="deleted-file">
−
README
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<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
<span class="new-file">
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README.md
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<li class="file-stats">
<a href="#b673aa201082fc4ac7c1ce32b7fad5e1f7a4da9f">
Read.hpp
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<li class="file-stats">
<a href="#bf5733bf40888b3439368feeb5a3b282001439e3">
StringHash.hpp
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
<span class="new-file">
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debian/changelog
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<li class="file-stats">
<a href="#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
<span class="new-file">
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debian/compat
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<span class="new-file">
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debian/control
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<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
<span class="new-file">
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debian/copyright
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<li class="file-stats">
<a href="#1e30d0c7a6bf369e7807bf342f430d9d3f297462">
<span class="new-file">
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debian/dindel-tgi1.01.dirs
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<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
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debian/rules
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<li class="file-stats">
<a href="#53399f7f2dd7535c43cdcfa511a9c06044a9c238">
<span class="new-file">
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debian/source/format
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<li class="file-stats">
<a href="#bad3c4a746d64c99b7de51883bcf8c93dfd479f5">
<span class="deleted-file">
−
digamma.hpp
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<li class="file-stats">
<a href="#11e331bcf248c96988992c37f79bb4e16573b0e5">
<span class="deleted-file">
−
foreach.hpp
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<li class="file-stats">
<a href="#1177967e0fecfe2412efb3b5fd77eaa322603315">
<span class="new-file">
+
python/convertVCFToDindel.py
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</a>
</li>
<li class="file-stats">
<a href="#8fc149d87a416e5972c20c35df8b8ef5e3cde9b0">
<span class="new-file">
+
python/makeGenotypeLikelihoodFilePooled.py
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<li class="file-stats">
<a href="#ad054d1d82c34879b8a031d4a5606ce2d63fbeed">
<span class="new-file">
+
python/makeWindows.py
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<li class="file-stats">
<a href="#ce938fe84e88b10ffbbc48f8c6e4ee79ed38c647">
<span class="new-file">
+
python/mergeOutputDiploid.py
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</li>
<li class="file-stats">
<a href="#fb7b9a67030cef14cff51d91a903cb64a1ef849f">
<span class="new-file">
+
python/mergeOutputPooled.py
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<li class="file-stats">
<a href="#a0f4cf71cac4e8a388a457679479afc43a819f32">
<span class="new-file">
+
python/selectCandidates.py
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<li class="file-stats">
<a href="#d0808835c64320884e755171a209b387d03cab15">
<span class="new-file">
+
python/utils/AnalyzeSequence.py
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</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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