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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/dindel">Debian Med / dindel</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/dindel/commit/f6a5a869ee6f2ada72914af96a64333b1271a502">f6a5a869</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-08-13T11:46:19Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Package dindel-tgi since this seems to be actively maintained and contains some sensible enhancement
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/dindel/commit/e3768d2368ceaf98c7bd8e5523969340637110c4">e3768d23</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-08-13T11:46:32Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.01-wu1-3+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/dindel/commit/bfdf00568e1b5db9d6c5aa13c68176f7b94e4aaa">bfdf0056</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-08-13T11:46:33Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/1.01-wu1-3+dfsg'
Update to upstream version '1.01-wu1-3+dfsg'
with Debian dir d05d51bbea7ad18786bcdb3a1029db2e08d8b859</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/dindel/commit/2315f438602c34e2b6a7c80ee9c62f574ff52975">2315f438</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-08-13T11:56:35Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version, adapt patches
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/dindel/commit/e2d6098db7a85aa637caeea77c49c134ea50cd7b">e2d6098d</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-08-13T11:57:04Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">README ist now README.md
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/dindel/commit/8b9890021bec765537531087bced2a7785bd8f5e">8b989002</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-08-13T11:57:31Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debhelper 11
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/dindel/commit/8c6d555d91e8d8d40229071ac62937b3996c9500">8c6d555d</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-08-13T11:57:35Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Point Vcs fields to salsa.debian.org
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/dindel/commit/28ce9e16202788e546409cb00c33fd60228014f7">28ce9e16</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-08-13T11:57:35Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Standards-Version: 4.2.0
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/dindel/commit/6c19f55115109833f9ee7c60a90d807e7827a21a">6c19f551</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-08-13T12:03:45Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update copyright
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/dindel/commit/951555ec05d059cc263e88c183122d28eae7998e">951555ec</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-08-13T12:05:38Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#a5cc2925ca8258af241be7e5b0381edf30266302">
<span class="new-file">
+
.gitignore
</span>
</a>
</li>
<li class="file-stats">
<a href="#7445606fbf8f3683cd42bdc54b05d7a0bc2dfc44">
<span class="new-file">
+
.gitmodules
</span>
</a>
</li>
<li class="file-stats">
<a href="#c1f5f5ab64c0932e4fcfc0e08568b61c01f182f1">
DInDel.cpp
</a>
</li>
<li class="file-stats">
<a href="#cf618b6c8afc54f60eedbe45519f79fad8302474">
Faster.cpp
</a>
</li>
<li class="file-stats">
<a href="#2887a025d7a5c6d1dd389bf7396788e4978eaa5e">
GetCandidates.cpp
</a>
</li>
<li class="file-stats">
<a href="#28c58eeb4d814d34b0f047b0ab699a9928d03c2e">
Haplotype.hpp
</a>
</li>
<li class="file-stats">
<a href="#8568304ac3db841d35168f8545a26138ca231a95">
HaplotypeDistribution.hpp
</a>
</li>
<li class="file-stats">
<a href="#0398ccd0f49298b10a3d76a47800d2ebecd49859">
<span class="new-file">
+
LICENSE
</span>
</a>
</li>
<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
Makefile
</a>
</li>
<li class="file-stats">
<a href="#aface53322f1d4a3ebb7c105872b889135bc7236">
OutputData.hpp
</a>
</li>
<li class="file-stats">
<a href="#69e27356ef629022720d868ab0c0e3394775b6c1">
<span class="deleted-file">
−
README
</span>
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
<span class="new-file">
+
README.md
</span>
</a>
</li>
<li class="file-stats">
<a href="#b673aa201082fc4ac7c1ce32b7fad5e1f7a4da9f">
Read.hpp
</a>
</li>
<li class="file-stats">
<a href="#bf5733bf40888b3439368feeb5a3b282001439e3">
StringHash.hpp
</a>
</li>
<li class="file-stats">
<a href="#cf9802e192b48f765b1b5c8268d550d89c933053">
debian/README.source
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
debian/compat
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
</a>
</li>
<li class="file-stats">
<a href="#3a5a7cdb36d3ebf45777d0bc382dd46aa7a18f32">
debian/docs
</a>
</li>
<li class="file-stats">
<a href="#2b4eb361dad3134807b3883561d540947450e354">
debian/patches/fix-ftbfs-with-gcc6.patch
</a>
</li>
<li class="file-stats">
<a href="#e74de1d79ffaf2d6fad65822e74772e6cda1edf0">
<span class="deleted-file">
−
debian/patches/fix-ftbfs-with-new-boost.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#9b3c6ff019b4e1d652d4fc4bc500f7365e468d3c">
debian/patches/modernize-Makefile.patch
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#68ef9f98c01c7eecd4c605cc26048a06f3304b79">
debian/watch
</a>
</li>
<li class="file-stats">
<a href="#bad3c4a746d64c99b7de51883bcf8c93dfd479f5">
<span class="deleted-file">
−
digamma.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#11e331bcf248c96988992c37f79bb4e16573b0e5">
<span class="deleted-file">
−
foreach.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#1177967e0fecfe2412efb3b5fd77eaa322603315">
<span class="new-file">
+
python/convertVCFToDindel.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#8fc149d87a416e5972c20c35df8b8ef5e3cde9b0">
<span class="new-file">
+
python/makeGenotypeLikelihoodFilePooled.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#ad054d1d82c34879b8a031d4a5606ce2d63fbeed">
<span class="new-file">
+
python/makeWindows.py
</span>
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
<div class="footer" style="margin-top: 10px;">
<p style="font-size: small; color: #777;">
—
<br>
<a href="https://salsa.debian.org/med-team/dindel/compare/1fb2ff9843f8d2013f0b7bd9148a87ee662b16f1...951555ec05d059cc263e88c183122d28eae7998e">View it on GitLab</a>.
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