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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/tophat">Debian Med / tophat</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/tophat/commit/e4885b3b3fc971ef9daf758dee5d50662ca83d65">e4885b3b</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-08-18T06:46:19Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix Makefile.am
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/tophat/commit/e29e810d705c084d420a21d30cb0e5533b021286">e29e810d</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-08-18T06:46:41Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debhelper 11
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/tophat/commit/020b9edb6e5ac2365ceb49467175af8c652dc276">020b9edb</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-08-18T06:46:46Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Point Vcs fields to salsa.debian.org
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/tophat/commit/8389cc0317e08f1c3fc2160a2561220c002d7cc5">8389cc03</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-08-18T06:46:46Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Standards-Version: 4.2.0
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/tophat/commit/e79b5366228e5a6c64a0bdbe88fddcc0e5375f23">e79b5366</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-08-18T07:15:29Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Really fix Makefile.am
</pre>
</li>
</ul>
<h4>5 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
debian/compat
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#cbb114a7e106526eb959c56a9d965a66dd184927">
<span class="new-file">
+
debian/patches/fix_makefile.am.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/tophat/compare/65cf360b391beba152797a85d77f10769bbf8999...e79b5366228e5a6c64a0bdbe88fddcc0e5375f23#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">tophat (2.1.1+dfsg1-2) UNRELEASED; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Fix Makefile.am</span>
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<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> Closes: #906510</span>
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<td class="diff-line-num new new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> * debhelper 11</span>
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<td class="diff-line-num new new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> * Point Vcs fields to salsa.debian.org</span>
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<td class="diff-line-num new new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> * Standards-Version: 4.2.0</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Sat, 18 Aug 2018 08:44:34 +0200</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"></span>
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<td class="diff-line-num new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">tophat (2.1.1+dfsg1-1) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"></span>
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<td class="diff-line-num new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> * Team upload</span>
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<li id="78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
<a href="https://salsa.debian.org/med-team/tophat/compare/65cf360b391beba152797a85d77f10769bbf8999...e79b5366228e5a6c64a0bdbe88fddcc0e5375f23#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4"><strong>debian/compat</strong></a>
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1
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">1<span class="idiff left right">0</span></span></pre>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">1<span class="idiff left right">1</span></span></pre>
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<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/tophat/compare/65cf360b391beba152797a85d77f10769bbf8999...e79b5366228e5a6c64a0bdbe88fddcc0e5375f23#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -5,7 +5,7 @@ Uploaders: Carlos Borroto <carlos.borroto@gmail.com>,</td>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"> Andreas Tille <tille@debian.org></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">Section: science</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">Priority: optional</span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext">Build-Depends: debhelper (>= 1<span class="idiff left right">0</span>),</span>
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8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">Build-Depends: debhelper (>= 1<span class="idiff left right">1~</span>),</span>
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9
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9
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> libbam-dev,</span>
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10
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> zlib1g-dev,</span>
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11
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> python,</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -14,9 +14,9 @@ Build-Depends: debhelper (>= 10),</td>
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14
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> libboost-thread-dev,</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> help2man,</span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> bowtie</span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">1.1</span></span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext">Vcs-Browser: https://<span class="idiff left right">anonscm.debian.org/cgit/debian-med/tophat.gi</span>t</span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="plaintext">Vcs-Git: https://<span class="idiff left right">anonscm.debian.org/git/debian-med</span>/tophat.git</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">2.0</span></span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext">Vcs-Browser: https://<span class="idiff left right">salsa.debian.org/med-team/topha</span>t</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext">Vcs-Git: https://<span class="idiff left right">salsa.debian.org/med-team</span>/tophat.git</span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext">Homepage: http://ccb.jhu.edu/software/tophat</span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext">Package: tophat</span>
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<li id="cbb114a7e106526eb959c56a9d965a66dd184927">
<a href="https://salsa.debian.org/med-team/tophat/compare/65cf360b391beba152797a85d77f10769bbf8999...e79b5366228e5a6c64a0bdbe88fddcc0e5375f23#cbb114a7e106526eb959c56a9d965a66dd184927"><strong>debian/patches/fix_makefile.am.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff">Description: Fix Makefile.am</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff">Bug-Debian: https://bugs.debian.org/906510</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff">Author: Andreas Tille <tille@debian.org></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff">Last-Update: Sat, 18 Aug 2018 08:44:34 +0200</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/src/Makefile.am</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/src/Makefile.am</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -707,31 +707,31 @@ libgc_a_SOURCES = \</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"> #-- program sources</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"> prep_reads_SOURCES = prep_reads.cpp</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-prep_reads_LDADD = $(top_builddir)/src/libtophat.a $(BAM_LIB)</span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+prep_reads_LDADD = libtophat.a $(BAM_LIB)</span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"> prep_reads_LDFLAGS = $(LDFLAGS) </span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"> segment_juncs_SOURCES = segment_juncs.cpp</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-segment_juncs_LDADD = $(top_builddir)/src/libtophat.a $(BOOST_THREAD_LIBS) $(BOOST_SYSTEM_LIB) $(BAM_LIB)</span></span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+segment_juncs_LDADD = libtophat.a $(BOOST_THREAD_LIBS) $(BOOST_SYSTEM_LIB) $(BAM_LIB)</span></span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"> segment_juncs_LDFLAGS = $(LDFLAGS) $(BOOST_LDFLAGS)</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"> long_spanning_reads_SOURCES = long_spanning_reads.cpp</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-long_spanning_reads_LDADD = $(top_builddir)/src/libtophat.a $(BOOST_THREAD_LIBS) $(BOOST_SYSTEM_LIB) $(BAM_LIB)</span></span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+long_spanning_reads_LDADD = libtophat.a $(BOOST_THREAD_LIBS) $(BOOST_SYSTEM_LIB) $(BAM_LIB)</span></span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="diff"> long_spanning_reads_LDFLAGS = $(LDFLAGS) $(BOOST_LDFLAGS)</span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="diff"> gtf_juncs_SOURCES = gtf_juncs.cpp</span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-gtf_juncs_LDADD = $(top_builddir)/src/libtophat.a libgc.a $(BAM_LIB)</span></span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+gtf_juncs_LDADD = libtophat.a libgc.a $(BAM_LIB)</span></span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="diff"> gtf_juncs_LDFLAGS = $(LDFLAGS)</span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="diff"> juncs_db_SOURCES = juncs_db.cpp</span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-juncs_db_LDADD = $(top_builddir)/src/libtophat.a $(BAM_LIB)</span></span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+juncs_db_LDADD = libtophat.a $(BAM_LIB)</span></span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="diff"> juncs_db_LDFLAGS = $(LDFLAGS)</span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="diff"> tophat_reports_SOURCES = tophat_reports.cpp</span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-tophat_reports_LDADD = $(top_builddir)/src/libtophat.a $(BOOST_THREAD_LIBS) $(BOOST_SYSTEM_LIB) $(BAM_LIB)</span></span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+tophat_reports_LDADD = libtophat.a $(BOOST_THREAD_LIBS) $(BOOST_SYSTEM_LIB) $(BAM_LIB)</span></span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="diff"> tophat_reports_LDFLAGS = $(LDFLAGS) $(BOOST_LDFLAGS)</span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="diff"> fix_map_ordering_SOURCES = fix_map_ordering.cpp</span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-fix_map_ordering_LDADD = $(top_builddir)/src/libtophat.a $(BAM_LIB)</span></span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+fix_map_ordering_LDADD = libtophat.a $(BAM_LIB)</span></span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="diff"> fix_map_ordering_LDFLAGS = $(LDFLAGS)</span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="diff"> bam2fastx_SOURCES = bam2fastx.cpp</span>
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -739,18 +739,18 @@ bam2fastx_LDADD = $(top_builddir)/src/li</span></span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="diff"> bam2fastx_LDFLAGS = $(LDFLAGS)</span>
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="diff"> bam_merge_SOURCES = bam_merge.cpp</span>
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-bam_merge_LDADD = $(top_builddir)/src/libtophat.a $(top_builddir)/src/libgc.a $(BAM_LIB)</span></span>
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+bam_merge_LDADD = libtophat.a $(top_builddir)/src/libgc.a $(BAM_LIB)</span></span>
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="diff"> bam_merge_LDFLAGS = $(LDFLAGS)</span>
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="diff"> sam_juncs_SOURCES = sam_juncs.cpp</span>
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-sam_juncs_LDADD = $(top_builddir)/src/libtophat.a $(BAM_LIB)</span></span>
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+sam_juncs_LDADD = libtophat.a $(BAM_LIB)</span></span>
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="diff"> sam_juncs_LDFLAGS = $(LDFLAGS)</span>
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59
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="diff"> map2gtf_SOURCES = map2gtf.cpp</span>
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61
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-map2gtf_LDADD = $(top_builddir)/src/libtophat.a libgc.a $(BAM_LIB)</span></span>
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+map2gtf_LDADD = libtophat.a libgc.a $(BAM_LIB)</span></span>
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="diff"> map2gtf_LDFLAGS = $(LDFLAGS)</span>
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="diff"> gtf_to_fasta_SOURCES = GTFToFasta.cpp FastaTools.cpp</span>
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-gtf_to_fasta_LDADD = $(top_builddir)/src/libtophat.a libgc.a $(BAM_LIB)</span></span>
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+gtf_to_fasta_LDADD = libtophat.a libgc.a $(BAM_LIB)</span></span>
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="diff"> gtf_to_fasta_LDFLAGS = $(LDFLAGS)</span>
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="diff"> </span></pre>
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<a href="https://salsa.debian.org/med-team/tophat/compare/65cf360b391beba152797a85d77f10769bbf8999...e79b5366228e5a6c64a0bdbe88fddcc0e5375f23#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3,3 +3,4 @@ fix_includes_path.patch</td>
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3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">fix-gcc6.patch</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">remove-convenience-copy-of-samtools.patch</span>
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5
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5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">fix-compatibility-with-recent-samtools.patch</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">fix_makefile.am.patch</span></pre>
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