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<h3>
Sascha Steinbiss pushed to branch master
at <a href="https://salsa.debian.org/med-team/rna-star">Debian Med / rna-star</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/rna-star/commit/ecb17f9178c76308cee678cf0207ad968b86cea8">ecb17f91</a></strong>
<div>
<span>by Sascha Steinbiss</span>
<i>at 2018-08-18T14:13:42Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.6.1a+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/rna-star/commit/018a455cab5fa2944a50dff4ba3fcf27b997f801">018a455c</a></strong>
<div>
<span>by Sascha Steinbiss</span>
<i>at 2018-08-18T14:13:43Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Merge tag 'upstream/2.6.1a+dfsg'
Upstream version 2.6.1a+dfsg
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/rna-star/commit/1870aaca3348d4554991406b48485fca06881ac2">1870aaca</a></strong>
<div>
<span>by Sascha Steinbiss</span>
<i>at 2018-08-18T14:33:53Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">new upstream release
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/rna-star/commit/9439fd444807a6452afafb8af86704ad69628a4e">9439fd44</a></strong>
<div>
<span>by Sascha Steinbiss</span>
<i>at 2018-08-18T14:34:04Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">fix spelling
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#7facec255884dc55d3818e4dfbea89b1bdd7f49e">
CHANGES.md
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#45ae034d1d71b2d961abb7c91cf3d2f1a02a59c6">
<span class="new-file">
+
debian/patches/spelling.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#1d6ebb42152a3125296c8f3df8bc34651da72448">
doc/STARmanual.pdf
</a>
</li>
<li class="file-stats">
<a href="#5a5668ccb427693fe0e7ea2e054229206cb91b0a">
extras/doc-latex/STARmanual.tex
</a>
</li>
<li class="file-stats">
<a href="#dd357fd519066773532862e75ebb9276945c8fe5">
extras/doc-latex/parametersDefault.tex
</a>
</li>
<li class="file-stats">
<a href="#a8357dca9d3870ac8b5c4fb29c2557f48a459628">
extras/scripts/filterCirc.awk
</a>
</li>
<li class="file-stats">
<a href="#c1e0619fbb7d5e0b439dc69717eab9393167c40e">
<span class="new-file">
+
extras/scripts/mergeGeneCounts.awk
</span>
</a>
</li>
<li class="file-stats">
<a href="#d25356e3e77dc178a1e7f8dde504b75943174ff4">
extras/scripts/sjFromSAMcollapseUandM.awk
</a>
</li>
<li class="file-stats">
<a href="#df5a5eb1fe97c58681a425d56f8c64a59ce031f9">
extras/scripts/sjFromSAMcollapseUandM_inclOverlaps.awk
</a>
</li>
<li class="file-stats">
<a href="#1e5b4c1f1f6aa726b81044bc456a57d6b5ae614b">
source/BAMbinSortByCoordinate.cpp
</a>
</li>
<li class="file-stats">
<a href="#2ae4914dbcb1efeb17d11c457772c8c2308eb7c1">
source/BAMbinSortUnmapped.cpp
</a>
</li>
<li class="file-stats">
<a href="#385d57a3ccf42a0b7462635b147b385a25e91797">
source/Genome.cpp
</a>
</li>
<li class="file-stats">
<a href="#3b3dcc63f931c5db1862b61467a733972f52de53">
source/Genome.h
</a>
</li>
<li class="file-stats">
<a href="#f4eb1c9c89d8a6664c03d29afd21f3104689a8d9">
source/Genome_genomeGenerate.cpp
</a>
</li>
<li class="file-stats">
<a href="#3dd18c58e883d173d2b5fed252bbe1a9c5ea0a04">
source/InOutStreams.cpp
</a>
</li>
<li class="file-stats">
<a href="#6e7e9199db44be8b0f606c7c21db10763fc8b0eb">
source/Parameters.cpp
</a>
</li>
<li class="file-stats">
<a href="#22dddec98cc36e4316a4c62b8fbf52b8bc3149e7">
source/ParametersChimeric.h
</a>
</li>
<li class="file-stats">
<a href="#b7114790c4e1e6b022e2111cc5b7c713050c42a0">
source/Parameters_readSAMheader.cpp
</a>
</li>
<li class="file-stats">
<a href="#7245d12cb1ad9b44f08daa0ab3e702d4bed39531">
source/ReadAlignChunk_processChunks.cpp
</a>
</li>
<li class="file-stats">
<a href="#188667251bde9bacea8550ecde93b515b078a8a4">
source/ReadAlign_peOverlapMergeMap.cpp
</a>
</li>
<li class="file-stats">
<a href="#4896a67af34962395106d0bd2c41b227ffde5a58">
source/STAR.cpp
</a>
</li>
<li class="file-stats">
<a href="#fe90b02c2a1b9c4383b00f761ae92e70b34253ac">
source/SequenceFuns.cpp
</a>
</li>
<li class="file-stats">
<a href="#aee0d11f6c0e6bc020b1dc5c0773e66662064dd7">
source/SequenceFuns.h
</a>
</li>
<li class="file-stats">
<a href="#d4c60f01db9b6f7121b38adb8909eb258a5100e7">
source/Stats.cpp
</a>
</li>
<li class="file-stats">
<a href="#df3af448ddeaedbd17f5c0119a7f243ca368b693">
source/Stats.h
</a>
</li>
<li class="file-stats">
<a href="#eef122fda3a846cd84614a07011c0a84a375639b">
source/Transcript_alignScore.cpp
</a>
</li>
<li class="file-stats">
<a href="#46ef577d4524cc6123d3e3cfa053a5ca85c35274">
source/VERSION
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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