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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/kmer">Debian Med / kmer</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/kmer/commit/9c4cb1d7566dff4fc8fc6bc7e745a1e311b23887">9c4cb1d7</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-08-27T12:32:39Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Revert changes that do not fit latest upload which was not commited unfortunately. Changes will be restored after commits belonging to last upload
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/kmer/commit/7a8fd1fbade414ccaddbbfecfa5a0f88b7b403ac">7a8fd1fb</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-08-27T12:34:07Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Use the same compile flags in all Linux builds, and include -fPIC atac .so were built without -fPIC on !amd64/ia64.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/kmer/commit/5482cf2018efe2caad90bd56ab5beeea04918d8a">5482cf20</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-08-27T12:34:14Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Standards-Version: 4.2.0
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/kmer/commit/75e0c570163811a944d14fb8b57bb607e702d85f">75e0c570</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-08-27T12:34:21Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/kmer/commit/12042d88d8356813fded0a9bd675d2389a48eb18">12042d88</a></strong>
<div>
<span>by Liubov Chuprikova</span>
<i>at 2018-08-27T12:40:16Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add autopkgtest
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/kmer/commit/07672db9de30dc196ef274177b2cbeac26089812">07672db9</a></strong>
<div>
<span>by Liubov Chuprikova</span>
<i>at 2018-08-27T12:41:19Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Standards-Version: 4.2.1
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/kmer/commit/230aadefbb7258374b9cc4ead109f915e07df52b">230aadef</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-08-27T12:47:09Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add a patch to fix wrong evaluation order of an expression
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/kmer/commit/03eabbfba11ecf6eac8fccb28b581e2e9661ed71">03eabbfb</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-08-27T12:48:13Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add Bug-Debian field
</pre>
</li>
</ul>
<h4>5 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#8d1873404706871d5dcf89bcf97fe29a6946ac6f">
debian/patches/fix_wrong_evaluation_order.patch
</a>
</li>
<li class="file-stats">
<a href="#e349373591f77479f45e4fe01c4cecd5ac709c96">
<span class="new-file">
+
debian/patches/linux-cflags.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/kmer/compare/c3bcaa2895258123dbf29e90a231c33074c6a264...03eabbfba11ecf6eac8fccb28b581e2e9661ed71#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
<hr>
<table class="code white" style="font-family: monospace; font-size: 90%;" bgcolor="#fff" width="100%" cellpadding="0" cellspacing="0">
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<td class="diff-line-num old old_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="diff-line-num new_line old" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">kmer (0~20150903+r2013-<span class="idiff left right">5</span>) UNRELEASED; urgency=medium</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">kmer (0~20150903+r2013-<span class="idiff left right">6</span>) UNRELEASED; urgency=medium</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> * Team upload.</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> * Add autopkgtest.</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> * Standards-Version: 4.2.<span class="idiff left right">0</span></span>
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<td class="diff-line-num new old_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> * Standards-Version: 4.2.<span class="idiff left right">1</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"> * Add a patch to fix wrong evaluation order in an expression</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
7
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<td class="diff-line-num new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> Closes: #906980</span>
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<td class="diff-line-num old_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"></span>
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<td class="diff-line-num old_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> -- Liubov Chuprikova <chuprikovalv@gmail.com> Mon, 27 Aug 2018 11:37:43 +0200</span>
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext">kmer (0~20150903+r2013-5) unstable; urgency=medium</span>
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<td class="diff-line-num new new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> * Team upload</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> [ Adrian Bunk ]</span>
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<td class="diff-line-num new new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> * Use the same compile flags in all Linux builds, and include -fPIC</span>
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<td class="diff-line-num new new_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> atac .so were built without -fPIC on !amd64/ia64.</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> Closes: #907007</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> [ Andreas Tille ]</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> * Standards-Version: 4.2.0</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Sun, 26 Aug 2018 16:58:23 +0200</span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext">kmer (0~20150903+r2013-4) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> * Team upload.</span>
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<a href="https://salsa.debian.org/med-team/kmer/compare/c3bcaa2895258123dbf29e90a231c33074c6a264...03eabbfba11ecf6eac8fccb28b581e2e9661ed71#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -8,7 +8,7 @@ Build-Depends: debhelper (>= 11~),</td>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"># For ATAC</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> dh-python,</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> python-all-dev</span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext">Standards-Version: 4.2.<span class="idiff left right">0</span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext">Standards-Version: 4.2.<span class="idiff left right">1</span></span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/kmer</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/kmer.git</span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext">Homepage: http://kmer.sourceforge.net</span>
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<a href="https://salsa.debian.org/med-team/kmer/compare/c3bcaa2895258123dbf29e90a231c33074c6a264...03eabbfba11ecf6eac8fccb28b581e2e9661ed71#8d1873404706871d5dcf89bcf97fe29a6946ac6f"><strong>debian/patches/fix_wrong_evaluation_order.patch</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="diff">Author: Liubov Chuprikova <chuprikovalv@gmail.com></span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="diff">Last-Update: Mon, 27 August 2018 11:24:36 +0200</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="diff">Description: Fix a piece of code that has unpredictable results</span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="diff"></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff">Bug-Debian: https://bugs.debian.org/906980</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="diff"></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/atac-driver/libatac/atacMatchList.C</span></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/atac-driver/libatac/atacMatchList.C</span></span>
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<li id="e349373591f77479f45e4fe01c4cecd5ac709c96">
<a href="https://salsa.debian.org/med-team/kmer/compare/c3bcaa2895258123dbf29e90a231c33074c6a264...03eabbfba11ecf6eac8fccb28b581e2e9661ed71#e349373591f77479f45e4fe01c4cecd5ac709c96"><strong>debian/patches/linux-cflags.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff">Description: Use the same compile flags in all Linux builds, and include -fPIC</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"> atac .so were built without -fPIC on !amd64/ia64.</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff">Author: Adrian Bunk <bunk@debian.org></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff">Bug-Debian: https://bugs.debian.org/907007</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff">Last-Update: Thu, 23 Aug 2018 05:16:16 +0300</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- kmer-0~20150903+r2013.orig/configure.sh</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ kmer-0~20150903+r2013/configure.sh</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -57,12 +57,12 @@ if [ "x$target" = "x" ] ; then</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"> ;;</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"> Linux)</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"> target="Linux-i686$opts"</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- if [ `uname -m` = "x86_64" ] ; then</span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- target="Linux-amd64$opts"</span></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- fi</span></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- if [ `uname -m` = "ia64" ] ; then</span></span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- target="Linux-ia64$opts"</span></span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- fi</span></span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ #if [ `uname -m` = "x86_64" ] ; then</span></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ # target="Linux-amd64$opts"</span></span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ #fi</span></span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ #if [ `uname -m` = "ia64" ] ; then</span></span>
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23
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ # target="Linux-ia64$opts"</span></span>
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24
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ #fi</span></span>
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25
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="diff"> ;;</span>
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26
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="diff"> SunOS)</span>
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27
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="diff"> target="solaris$opts"</span>
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28
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -221,11 +221,11 @@ EOF</span></span>
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29
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="diff"> # Linux, optimized</span>
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30
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="diff"> CC := $CC</span>
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31
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="diff"> SHLIB_FLAGS := -shared</span>
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32
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-CFLAGS_COMPILE := -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer</span></span>
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33
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+CFLAGS_COMPILE := -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer</span></span>
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34
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="diff"> CLDFLAGS := -L/usr/local/lib</span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="diff"> CLIBS := -pthread -ldl</span>
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36
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="diff"> CXX := $CXX</span>
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37
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-CXXFLAGS_COMPILE := -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer</span></span>
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38
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+CXXFLAGS_COMPILE := -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer</span></span>
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39
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="diff"> CXXLDFLAGS := -L/usr/local/lib</span>
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40
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="diff"> CXXLIBS := -pthread -ldl</span>
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41
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="diff"> ARFLAGS := ruvs</span>
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42
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -350,7 +350,7 @@ EOF</span></span>
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43
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="diff"> echo " tru64, compaq Tru64, optimized"</span>
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44
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="diff"> echo " tru64-debug, compaq-debug Tru64, debug, warnings, trapuv"</span>
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45
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="diff"> echo ""</span>
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46
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- echo " linux Linux, i686, optimized"</span></span>
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<td class="diff-line-num new new_line" data-linenumber="47" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
47
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ echo " linux Linux, optimized"</span></span>
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48
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="diff"> echo " linux64 Linux, Opteron, optimized"</span>
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49
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="diff"> echo ""</span>
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50
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="diff"> echo " solaris Solaris, gcc, optimized (STALE)"</span></pre>
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<li id="bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
<a href="https://salsa.debian.org/med-team/kmer/compare/c3bcaa2895258123dbf29e90a231c33074c6a264...03eabbfba11ecf6eac8fccb28b581e2e9661ed71#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2,4 +2,5 @@ allow-freebsd-build.patch</td>
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2
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">atac-helper-script-paths.patch</span>
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3
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3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">atac-readme.patch</span>
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4
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">spelling.patch</span>
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5
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">linux-cflags.patch</span>
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5
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6
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">fix_wrong_evaluation_order.patch</span></pre>
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