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<h3>
Liubov Chuprikova pushed to branch master
at <a href="https://salsa.debian.org/med-team/kmer">Debian Med / kmer</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/kmer/commit/2467bacf66b1017368550f041b8b0f638164e256">2467bacf</a></strong>
<div>
<span>by Liubov Chuprikova</span>
<i>at 2018-08-27T13:44:06Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Delete mentions about atac failure
</pre>
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<h4>2 changed files:</h4>
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<li class="file-stats">
<a href="#f6a99a1e522a0f5ca122fd9818a9d8536ea59942">
debian/README.test
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<li class="file-stats">
<a href="#8bead32e7e58d25ada9d9a6c43de1bfd8d7b4058">
debian/tests/atac-unit-test
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="f6a99a1e522a0f5ca122fd9818a9d8536ea59942">
<a href="https://salsa.debian.org/med-team/kmer/commit/2467bacf66b1017368550f041b8b0f638164e256#f6a99a1e522a0f5ca122fd9818a9d8536ea59942"><strong>debian/README.test</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -5,9 +5,6 @@ To test atac run:</td>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="php"></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="php"> <span class="nx">sh</span> <span class="nx">atac</span><span class="o" style="font-weight: 600;">-</span><span class="nx">unit</span><span class="o" style="font-weight: 600;">-</span><span class="nx">test</span></span>
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<td class="diff-line-num new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="php"></span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="php"><span class="nx">NOTE</span><span class="o" style="font-weight: 600;">:</span> <span class="nx">Atac</span> <span class="nx">test</span> <span class="nx">fails</span> <span class="nx">with</span> <span class="nx">a</span> <span class="nx">segmentation</span> <span class="nx">fault</span><span class="o" style="font-weight: 600;">.</span> <span class="nx">Feel</span> <span class="nx">free</span> <span class="nx">to</span> <span class="k" style="font-weight: 600;">use</span> <span class="sb" style="color: #d14;">`reportbug</span></span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="php"><span class="sb" style="color: #d14;">atac`</span> <span class="k" style="font-weight: 600;">if</span> <span class="nx">you</span> <span class="nx">have</span> <span class="nx">some</span> <span class="nx">idea</span> <span class="nx">how</span> <span class="nx">to</span> <span class="nx">fix</span> <span class="nx">the</span> <span class="nx">test</span><span class="o" style="font-weight: 600;">.</span></span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="php"></span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="php"><span class="nx">To</span> <span class="nx">test</span> <span class="nx">sim4db</span> <span class="nx">run</span><span class="o" style="font-weight: 600;">:</span></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="php"></span>
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<td class="diff-line-num old_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="php"> <span class="nx">sh</span> <span class="nx">sim4db</span><span class="o" style="font-weight: 600;">-</span><span class="nx">unit</span><span class="o" style="font-weight: 600;">-</span><span class="nx">test</span></span>
</pre>
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<li id="8bead32e7e58d25ada9d9a6c43de1bfd8d7b4058">
<a href="https://salsa.debian.org/med-team/kmer/commit/2467bacf66b1017368550f041b8b0f638164e256#8bead32e7e58d25ada9d9a6c43de1bfd8d7b4058"><strong>debian/tests/atac-unit-test</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -14,8 +14,4 @@ tar -xzvf *.tar.gz; rm *.tar.gz</td>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="shell">atac <span class="nt" style="color: navy;">-meryldir</span> meryldir <span class="nt" style="color: navy;">-dir</span> results <span class="nt" style="color: navy;">-id1</span> Lepr <span class="nt" style="color: navy;">-seq1</span> GCF_000195855.1_ASM19585v1_genomic.fna <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="shell"> <span class="nt" style="color: navy;">-id2</span> Tuber <span class="nt" style="color: navy;">-seq2</span> GCF_000195955.2_ASM19595v2_genomic.fna</span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="shell"></span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># FIXME! This test fails with the following error message:</span></span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># > Segmentation fault</span></span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># > Failed to ganerate statistics.</span></span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="shell"></span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"RESULTS: OK</span><span class="se" style="color: #d14;">\n</span><span class="s2" style="color: #d14;">"</span></span></pre>
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