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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/bcftools">Debian Med / bcftools</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/bcftools/commit/99b9763265e6b80dcd2965fc3a752c17b6514b45">99b97632</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-08-02T02:40:55Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.9</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bcftools/commit/a6654e1bc626e4a62b78590321c86d9f281ccb44">a6654e1b</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-08-02T02:41:09Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/1.9'
Update to upstream version '1.9'
with Debian dir 3c24f90ab91127f24977642af6d85e68be435626</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bcftools/commit/0dcd59ecb872e179d065124fc1aca91117501b5f">0dcd59ec</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-08-02T02:41:09Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bcftools/commit/fa16c9ff6f035a7031419135eaa5f934b53b3c3c">fa16c9ff</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-08-02T02:47:59Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Standards-Version: 4.1.5
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bcftools/commit/c1c69bb5a068b0c94b4396e3f8aac8b6c2fb8480">c1c69bb5</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-08-02T02:49:14Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Adapt patches
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bcftools/commit/881e4c8f6f34a5dda429e243eda50ff1df5a37ab">881e4c8f</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-09-04T14:36:58Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Standards-Version: 4.2.1
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bcftools/commit/994f0c76ade6eafbef0923f4bf63f1bf5b0bd8e3">994f0c76</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-09-04T14:42:13Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix Perl interpreter PATH
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bcftools/commit/3e9bdd4ed7547d01bd0e09f20bdffa501023eab0">3e9bdd4e</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-09-04T14:44:42Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#c335a27a082cc8d17dd36dc0eda3086cb0c9baaa">
INSTALL
</a>
</li>
<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
Makefile
</a>
</li>
<li class="file-stats">
<a href="#9f621eb5fd3bcb2fa5c7bd228c9b1ad42edc46c8">
NEWS
</a>
</li>
<li class="file-stats">
<a href="#14bead975b6b06a4e370f9f1f38bce6c59923ed4">
bam_sample.c
</a>
</li>
<li class="file-stats">
<a href="#641a99f352653ad820a68a93f5671b3ec50e4ef6">
bcftools.h
</a>
</li>
<li class="file-stats">
<a href="#cabb0dd9061828c100ebff93dd54622b85325b6a">
bin.c
</a>
</li>
<li class="file-stats">
<a href="#87db583be5c13c1f7b3c958b10e03d67b6a2ca06">
configure.ac
</a>
</li>
<li class="file-stats">
<a href="#b5ff23f6805c7e214151156ce56e18a4ed804010">
consensus.c
</a>
</li>
<li class="file-stats">
<a href="#cb9f132eb7ad36b0e293b828436290909d1203e3">
convert.c
</a>
</li>
<li class="file-stats">
<a href="#ffca347bb50053be91e2750c17cb4f76fe9ab21c">
csq.c
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#a6bcfca35e835c1297fe9b2d4cfe4630534f3ea5">
debian/patches/skip_new_test_failing_on_32bit.patch
</a>
</li>
<li class="file-stats">
<a href="#b788ef82e9659c0a0dd0df2a4de49f560c0cc6d3">
debian/patches/tests-pluginpath.patch
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
<li class="file-stats">
<a href="#155bba183d1c525bb29e6a8f0a6f4d5203059fad">
doc/bcftools.1
</a>
</li>
<li class="file-stats">
<a href="#10c81da16b14b79039d2fb8ea89464665683576e">
doc/bcftools.html
</a>
</li>
<li class="file-stats">
<a href="#9a2b5aa2613ebd6ba3159cd62c01d98d9d354e6a">
doc/bcftools.txt
</a>
</li>
<li class="file-stats">
<a href="#3c41fd34a6f6633d79f03c873c93a1b2fe6e12cd">
filter.c
</a>
</li>
<li class="file-stats">
<a href="#674a74b50056179c447fbb0f8cd8d884a6e706dd">
<span class="new-file">
+
m4/hts_prog_cc_warnings.m4
</span>
</a>
</li>
<li class="file-stats">
<a href="#406e031b8824ea26ae0bf4d7579a1d89e3fb5906">
main.c
</a>
</li>
<li class="file-stats">
<a href="#d1ebbca9682a078e42dd56603975b9b66a897b61">
mpileup.c
</a>
</li>
<li class="file-stats">
<a href="#2550d737767f02f31c97bd5bf939805e32f62c9a">
plugins/check-sparsity.c
</a>
</li>
<li class="file-stats">
<a href="#e9bd420b27710f6ef5bb725960332502f6ad6b6f">
plugins/color-chrs.c
</a>
</li>
<li class="file-stats">
<a href="#16d330c4f5384ffc5d6fdfee3afd0dfd0f5f47c7">
plugins/contrast.c
</a>
</li>
<li class="file-stats">
<a href="#a1e830ce4bc81483fc86afb5364d8751bf420f21">
plugins/dosage.c
</a>
</li>
<li class="file-stats">
<a href="#606dc0ad58a1d2e80f84db8ef7aa86a554c398f8">
plugins/fill-tags.c
</a>
</li>
<li class="file-stats">
<a href="#5b4323c22b6e73495d6ee53ceabedb1569ff3b37">
plugins/fixref.c
</a>
</li>
<li class="file-stats">
<a href="#8e02a254703460287c486ef1f85b6ffc3dfd1fa2">
plugins/guess-ploidy.c
</a>
</li>
<li class="file-stats">
<a href="#453e6eb4ec6a5c9485f74150679be9dc12c29afc">
plugins/isecGT.c
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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