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<h3>
Dylan Aïssi pushed to branch master
at <a href="https://salsa.debian.org/med-team/beagle">Debian Med / beagle</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/beagle/commit/f97f7f2e44cce2c7047c476de6ca8c6e66b1a29d">f97f7f2e</a></strong>
<div>
<span>by Dylan Aïssi</span>
<i>at 2018-09-09T12:20:32Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update biblio
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/beagle/commit/383b59022c6c2b27893ffcea8d069bbadc7c6c3c">383b5902</a></strong>
<div>
<span>by Dylan Aïssi</span>
<i>at 2018-09-09T12:22:40Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 5.0-180703+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/beagle/commit/2bb9057c92f89284e96c96d5fd39fece3d11dbf7">2bb9057c</a></strong>
<div>
<span>by Dylan Aïssi</span>
<i>at 2018-09-09T12:22:40Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Merge tag 'upstream/5.0-180703+dfsg'
Upstream version 5.0-180703+dfsg
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/beagle/commit/f7d98ff4899cb3b343e3d88f65d079ce6018239e">f7d98ff4</a></strong>
<div>
<span>by Dylan Aïssi</span>
<i>at 2018-09-09T12:28:09Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update changelogs
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/beagle/commit/81e17be165b6a59812827f2cd04be7be882b5853">81e17be1</a></strong>
<div>
<span>by Dylan Aïssi</span>
<i>at 2018-09-09T12:37:11Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update d/rules with new upstream folders
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/beagle/commit/89178df8fdeba4026aa33beb762a3c9d84e502e3">89178df8</a></strong>
<div>
<span>by Dylan Aïssi</span>
<i>at 2018-09-09T12:47:47Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Correctly build bref tool
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#430afcda4ef68c8aac8ad29668282a796ec42c25">
<span class="deleted-file">
−
beagleutil/BasicIntInterval.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#8f4c8de70addfc6201a0be78a917151eeb3586ac">
<span class="deleted-file">
−
beagleutil/CenteredIntIntervalTree.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#e1278bf77479ff52b202fca77ce03daef681ef95">
beagleutil/ChromIds.java
</a>
</li>
<li class="file-stats">
<a href="#5deb5056c0326ef2fa7706bf604aee0190919ece">
beagleutil/ChromInterval.java
</a>
</li>
<li class="file-stats">
<a href="#b35797e1b11f8d20e90b3d56030212885a937712">
beagleutil/IntInterval.java
</a>
</li>
<li class="file-stats">
<a href="#56c4b4e9ef20a38d81ff6e40b5a42c4f61f660f5">
<span class="deleted-file">
−
beagleutil/IntIntervalTree.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#e0076214c7cf4907b49761372eaa3202413f190f">
beagleutil/Phase.java
</a>
</li>
<li class="file-stats">
<a href="#f8b6f8d8c7916002820fce4b962b3d4b2e5bf355">
beagleutil/SampleIds.java
</a>
</li>
<li class="file-stats">
<a href="#e03a0c9a6d48a99d8be3e54cb555f5a298391df1">
beagleutil/Samples.java
</a>
</li>
<li class="file-stats">
<a href="#98dec0ab46b960766ad98f9adeafe96136c0a429">
beagleutil/ThreadSafeIndexer.java
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</li>
<li class="file-stats">
<a href="#1884097eee2277cb5658cd255298b582766b2f14">
blbutil/BGZIPOutputStream.java
</a>
</li>
<li class="file-stats">
<a href="#abae7708c305920a561741dbc020e94cb67b633f">
blbutil/ByteIndexArray.java
→
blbutil/ByteArray.java
</a>
</li>
<li class="file-stats">
<a href="#d5385b16dc9b1eb17736008c9fb3ec9e3ab67c09">
<span class="new-file">
+
blbutil/CharArray.java
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<li class="file-stats">
<a href="#43d79af4c6f50989761b53830703e09a34b2c233">
<span class="deleted-file">
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blbutil/CharIndexArray.java
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</li>
<li class="file-stats">
<a href="#e37ab5cf3b497ceb310d0d9ee8bd18e609f4c00d">
blbutil/Const.java
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<li class="file-stats">
<a href="#cde7bd63ffdb333806d832fd9b3c91737660465d">
blbutil/FileIt.java
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<li class="file-stats">
<a href="#6079b16bd032367aafb4fb3b5a7ec3cc428ebc03">
blbutil/FileUtil.java
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<li class="file-stats">
<a href="#4e6ab3267343934e3de38299e6fdc4e3f2a300d2">
blbutil/Filter.java
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</li>
<li class="file-stats">
<a href="#08657c75a9a9746475e49445932865fc0544632d">
vcf/HapsMarker.java
→
blbutil/FloatArray.java
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</li>
<li class="file-stats">
<a href="#1b00c0f3cd07a4d710dc1b87516e67596006635f">
<span class="new-file">
+
blbutil/FloatList.java
</span>
</a>
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<li class="file-stats">
<a href="#edde8a0e6449793090fa2031df9e7fb51a1918ed">
<span class="deleted-file">
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blbutil/IndexMap.java
</span>
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<li class="file-stats">
<a href="#b93e3199424aa9da641813c4e014540e353d8eba">
<span class="deleted-file">
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blbutil/IndexSet.java
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</a>
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<li class="file-stats">
<a href="#1928aebe75a42243fe3f56cf57a32c12bb414d3e">
blbutil/InputIt.java
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</li>
<li class="file-stats">
<a href="#3b52a0a07c52e11d550254b7c76aec1c1d15bbd2">
blbutil/IntArray.java
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</li>
<li class="file-stats">
<a href="#788d976358babcfa6bfcf9b315fa8221a63a1df7">
blbutil/IntList.java
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</li>
<li class="file-stats">
<a href="#86ae292894e7d8ff80b9d58f88ffa9401aa56657">
<span class="new-file">
+
blbutil/IntMap.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#a9b6d278a9d7822d1409d486e90beaf46aa91039">
blbutil/IntSet.java
</a>
</li>
<li class="file-stats">
<a href="#3e5b49c9c700b85f5ed3318cbab573548eb58f0a">
blbutil/IntPair.java
→
blbutil/Pair.java
</a>
</li>
<li class="file-stats">
<a href="#e0b91020f8e992ebb7ede4ba8cb317163a5340b7">
blbutil/SampleFileIt.java
</a>
</li>
<li class="file-stats">
<a href="#8f84e9dd471d152f9bdc73d87e3473bdb1b40991">
<span class="deleted-file">
−
blbutil/ShiftedByteIndexArray.java
</span>
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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