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<h3>
Andreas Tille pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/samtools">Debian Med / samtools</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/samtools/commit/fc3ddb2b32015ac88b82352460949cd3350a8913">fc3ddb2b</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-09-10T19:34:16Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.9</pre>
</li>
</ul>
<h4>28 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#c335a27a082cc8d17dd36dc0eda3086cb0c9baaa">
INSTALL
</a>
</li>
<li class="file-stats">
<a href="#0398ccd0f49298b10a3d76a47800d2ebecd49859">
LICENSE
</a>
</li>
<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
Makefile
</a>
</li>
<li class="file-stats">
<a href="#9f621eb5fd3bcb2fa5c7bd228c9b1ad42edc46c8">
NEWS
</a>
</li>
<li class="file-stats">
<a href="#69e27356ef629022720d868ab0c0e3394775b6c1">
README
</a>
</li>
<li class="file-stats">
<a href="#1bb0ee14ea54633c87c40fe410d73790a19569d2">
bam.h
</a>
</li>
<li class="file-stats">
<a href="#47e9e5b41a99db7f29a9c389319288b5be3dd44d">
bam2depth.c
</a>
</li>
<li class="file-stats">
<a href="#b87c2f698442cf217a3e1f210a9a32243d57e645">
bam_cat.c
</a>
</li>
<li class="file-stats">
<a href="#9c88dc776e2c0fafefd9efcafebfc5ff56b0e55c">
bam_index.c
</a>
</li>
<li class="file-stats">
<a href="#a19cbf83643bebddfd426a29d1d58994cea725a3">
bam_lpileup.c
</a>
</li>
<li class="file-stats">
<a href="#a933ca350aef7d0983a7c7029f2ef5b529f89ea5">
bam_plcmd.c
</a>
</li>
<li class="file-stats">
<a href="#4554809383bbbc3e2470c76b4bfd91881ede7125">
bam_sort.c
</a>
</li>
<li class="file-stats">
<a href="#626f775b286121e6af2d42eb75cd46e1cee23a5f">
bamshuf.c
</a>
</li>
<li class="file-stats">
<a href="#bfc81e0a1121ab31c44ab8a041c8b63aa4167e0f">
bamtk.c
</a>
</li>
<li class="file-stats">
<a href="#738362cbccdf6bee48db83872ebc9b8fa81d0564">
bedcov.c
</a>
</li>
<li class="file-stats">
<a href="#4d8f0ca62bc8e28a9dad1c22aed2061b2af7c219">
bedidx.c
</a>
</li>
<li class="file-stats">
<a href="#ced9271a1425d2096dde91b8009c5984df9d7101">
bedidx.h
</a>
</li>
<li class="file-stats">
<a href="#51f41eca8f6413c77444e12fb0d221cbe1313344">
faidx.c
</a>
</li>
<li class="file-stats">
<a href="#8ffa3ea228f0c7b02b256ef58396b96df4f85d6a">
misc/blast2sam.pl
</a>
</li>
<li class="file-stats">
<a href="#72cecc0b4cbae4d8c1bf77cb222c6b9d280764bc">
misc/maq2sam.c
</a>
</li>
<li class="file-stats">
<a href="#7fc122a193ebce9d5f0d280e1d5b1e5cef8e0f3f">
misc/plot-bamstats
</a>
</li>
<li class="file-stats">
<a href="#001a99e08982475255b42e38ac7409744c364808">
misc/wgsim.1
</a>
</li>
<li class="file-stats">
<a href="#6e584d67051b3439a074b4dcc9921d5b39bd7ede">
misc/wgsim.c
</a>
</li>
<li class="file-stats">
<a href="#4b0214659cc072a1ae9ccc0370fc2d744635e906">
phase.c
</a>
</li>
<li class="file-stats">
<a href="#6bc966f21a3d067c827e207d56c8d61d59c29a39">
sam_utils.c
</a>
</li>
<li class="file-stats">
<a href="#776f7eddceb103540612de0a0e2d6ceadc0bb93b">
sam_view.c
</a>
</li>
<li class="file-stats">
<a href="#6136134c74ebcf09a5b07448867f77a8b228479f">
samtools.1
</a>
</li>
<li class="file-stats">
<a href="#24c7fd3c3a410f6ed90f7acc5099fa86d05aa3a9">
samtools.h
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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