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<h3>
Liubov Chuprikova pushed to branch master
at <a href="https://salsa.debian.org/med-team/unicycler">Debian Med / unicycler</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/unicycler/commit/287c07f0396f2983476245141501c74dd55f8131">287c07f0</a></strong>
<div>
<span>by Liubov Chuprikova</span>
<i>at 2018-09-11T13:54:17Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Set $TERM in d/rules; delete skip_failing_tests.patch
</pre>
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<h4>3 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#35ae1acfd56a9e3ee5566e8f8016f424fadac048">
<span class="deleted-file">
−
debian/patches/skip_failing_tests.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<h4>Changes:</h4>
<li id="bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
<a href="https://salsa.debian.org/med-team/unicycler/commit/287c07f0396f2983476245141501c74dd55f8131#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">spades.patch</span>
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"># bowtie.patch </span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">install_wo_extra_steps.patch</span></pre>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext">skip_failing_tests.patch</span></pre>
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<br>
</li>
<li id="35ae1acfd56a9e3ee5566e8f8016f424fadac048">
<a href="https://salsa.debian.org/med-team/unicycler/commit/287c07f0396f2983476245141501c74dd55f8131#35ae1acfd56a9e3ee5566e8f8016f424fadac048"><strong>debian/patches/skip_failing_tests.patch</strong>
deleted
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="diff">Author: Liubov Chuprikova <chuprikovalv@gmail.com></span>
</pre>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="diff">Last-Update: Fri, 7 September 2018 18:54:54 +0200</span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="diff">Description: Skip strangly failing tests for a while.</span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="diff"></span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="diff"></span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/test/test_help_text.py</span></span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/test/test_help_text.py</span></span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -37,6 +37,7 @@</span></span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="diff"> def test_return_code(self):</span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="diff"> self.assertEqual(self.return_code, 0)</span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ @unittest.skip("stderr != 0 Need more investigation!")</span></span>
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<td class="diff-line-num old old_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="diff"> def test_output(self):</span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="diff"> self.assertTrue(len(self.stdout) > 0)</span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="diff"> self.assertEqual(len(self.stderr), 0)</span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -94,6 +95,7 @@</span></span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="diff"> def test_return_code(self):</span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="diff"> self.assertEqual(self.return_code, 0)</span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ @unittest.skip("stderr != 0 Need more investigation!")</span></span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="diff"> def test_output(self):</span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="diff"> self.assertTrue(len(self.stdout) > 0)</span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="diff"> self.assertEqual(len(self.stderr), 0)</span></pre>
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<li id="8756c63497c8dc39f7773438edf53b220c773f67">
<a href="https://salsa.debian.org/med-team/unicycler/commit/287c07f0396f2983476245141501c74dd55f8131#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2,7 +2,13 @@</td>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"># DH_VERBOSE := 1</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"># NOTE: All build steps are described in setup.py:UnicyclerInstall</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"># Build time tests are flaky</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">export DH_BUILD_MAINT_OPTIONS=nocheck</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext">export DEB_BUILD_MAINT_OPTIONS=hardening=+all</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext">include /usr/share/dpkg/default.mk</span>
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6
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"></span>
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7
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"># copy all nacessary data before testing and make clean after the testing</span>
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8
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14
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext">export PYBUILD_BEFORE_TEST=cp -a unicycler-runner.py {build_dir}; \</span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -12,13 +18,8 @@ export PYBUILD_AFTER_TEST=rm {build_dir}/unicycler-runner.py; \</td>
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12
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> rm -r {build_dir}/sample_data; \</span>
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13
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> rm -r {build_dir}/unicycler/__pycache__</span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext"># Build time tests are flaky</span>
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<td class="diff-line-num old old_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
17
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext">export DH_BUILD_MAINT_OPTIONS=nocheck</span>
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<td class="diff-line-num old old_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
18
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext"></span>
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<td class="diff-line-num old old_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
19
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="plaintext">export DEB_BUILD_MAINT_OPTIONS=hardening=+all</span>
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<td class="diff-line-num old old_line" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
20
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext"></span>
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21
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="plaintext">include /usr/share/dpkg/default.mk</span>
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<td class="diff-line-num new old_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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21
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"># Set $TEMR to a known value to avoid "tput: No value for $TERM and no -T specified"</span>
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22
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext">export TERM=linux</span>
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<td class="diff-line-num old_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
22
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<td class="diff-line-num new_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
23
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"></span>
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<td class="diff-line-num old_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
23
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24
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext">%:</span>
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<td class="diff-line-num old_line" data-linenumber="24" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
24
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25
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> dh $@ --with python3 --buildsystem=pybuild</span>
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