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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/unicycler">Debian Med / unicycler</a>
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<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/unicycler/commit/3f550f65b36f54f14549a853924da3cb3cbbae78">3f550f65</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-09-11T18:28:06Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Since Liubov did the ITP she should also be Uploader, also used her ID as changelog owner
</pre>
</li>
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<strong><a href="https://salsa.debian.org/med-team/unicycler/commit/147d3763af90d209771a3cf8e2ec72e8109963d3">147d3763</a></strong>
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<span>by Andreas Tille</span>
<i>at 2018-09-11T18:28:56Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Standards-Version: 4.2.1
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<li>
<strong><a href="https://salsa.debian.org/med-team/unicycler/commit/bae0f302cfb7849c5229611b82c9b8aa8e80fc2f">bae0f302</a></strong>
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<span>by Andreas Tille</span>
<i>at 2018-09-11T18:34:45Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Rather run the build time tests and ignore errors than no tests at all.
Thus we might have a look into build-logs to see what is failing
</pre>
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<li>
<strong><a href="https://salsa.debian.org/med-team/unicycler/commit/a613adefc8e91577340c377b66680fb920b6f463">a613adef</a></strong>
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<span>by Andreas Tille</span>
<i>at 2018-09-11T19:15:56Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">No need for dh_link override hack
</pre>
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<h4>3 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/unicycler/compare/228f5fd3fd5f864e618350dfb256af084902a18d...a613adefc8e91577340c377b66680fb920b6f463#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2,4 +2,4 @@ unicycler (0.4.7+dfsg-1) UNRELEASED; urgency=medium</td>
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> * Initial release (Closes: #908599)</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> -- <span class="idiff left right">Andreas Tille <tille@debian.org> Thu, 06 Sep 2018 08:32:49</span> +0200</span></pre>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> -- <span class="idiff left right">Liubov Chuprikova <chuprikovalv@gmail.com> Tue, 11 Sep 2018 20:27:33</span> +0200</span></pre>
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<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/unicycler/compare/228f5fd3fd5f864e618350dfb256af084902a18d...a613adefc8e91577340c377b66680fb920b6f463#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">Source: unicycler</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext">Uploaders: Andreas Tille <tille@debian.org></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">Uploaders: Andreas Tille <tille@debian.org>,</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> Liubov Chuprikova <chuprikovalv@gmail.com></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">Section: science</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">Priority: optional</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">Build-Depends: debhelper (>= 11~),</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -16,7 +17,7 @@ Build-Depends: debhelper (>= 11~),</td>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> spades,</span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> libseqan2-dev,</span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> zlib1g-dev</span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">1.4</span></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">2.1</span></span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/unicycler</span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/unicycler.git</span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext">Homepage: https://github.com/rrwick/Unicycler</span>
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<a href="https://salsa.debian.org/med-team/unicycler/compare/228f5fd3fd5f864e618350dfb256af084902a18d...a613adefc8e91577340c377b66680fb920b6f463#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4,7 +4,9 @@</td>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"># Build time tests are flaky</span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext">export DH_BUILD_MAINT_OPTIONS=nocheck</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"># export DH_BUILD_MAINT_OPTIONS=nocheck</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"># But rather run the tests and ignore errors than no tests at all.</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"># Thus we might have a look into build-logs to see what is failing</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">export DEB_BUILD_MAINT_OPTIONS=hardening=+all</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -32,11 +34,11 @@ override_dh_auto_build:</td>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> make</span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"> dh_auto_build</span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="plaintext">override_dh_<span class="idiff left right">link</span>:</span>
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<pre style="margin: 0;">-<span id="LC36" class="line" lang="plaintext"><span class="idiff left right"> dh_link</span></span>
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<pre style="margin: 0;">-<span id="LC37" class="line" lang="plaintext"> <span class="idiff left right"># symlink versioned shared lib to make it found</span></span>
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<pre style="margin: 0;">-<span id="LC38" class="line" lang="plaintext"> <span class="idiff left right"># FIXME: actually the cpp_functions*.so libs for different Python3 versions are identical!</span></span>
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="plaintext"> <span class="idiff left right"># This should be checked and normalised</span></span>
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<pre style="margin: 0;">-<span id="LC40" class="line" lang="plaintext"> <span class="idiff left right">for pyldir in `dirname $$(find debian -name "cpp_functions*.so") | sort` ; do</span> \</span>
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<pre style="margin: 0;">-<span id="LC41" class="line" lang="plaintext"> <span class="idiff left right"> ln -s `basename $$(find debian -name "cpp_functions*.so")` $${pyldir}/cpp_functions.so ; \</span></span>
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<pre style="margin: 0;">-<span id="LC42" class="line" lang="plaintext"><span class="idiff left right"> done</span></span></pre>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="plaintext">override_dh_<span class="idiff left right">auto_test</span>:</span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="plaintext"><span class="idiff left right">ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))</span></span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="plaintext"> <span class="idiff left right">BUILDPATH=$(shell pybuild --print build_dir --interpreter python3) ; \</span></span>
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40
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="plaintext"> <span class="idiff left right">ln -s $(CURDIR)/sample_data $${BUILDPATH} ; \</span></span>
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41
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="plaintext"> <span class="idiff left right">ln -s $(CURDIR)/unicycler-runner.py $${BUILDPATH} ; \</span></span>
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42
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="plaintext"> <span class="idiff left right">cp -a unicycler/*.so $${BUILDPATH}/$(PYBUILD_NAME) ;</span> \</span>
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43
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="plaintext"> <span class="idiff left right">PYTHONPATH=$${BUILDPATH}/$(PYBUILD_NAME) dh_auto_test || true</span></span>
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44
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="plaintext"><span class="idiff left right">endif</span></span></pre>
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