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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/libvcflib">Debian Med / libvcflib</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/libvcflib/commit/a37451af340cadf2e5c98d5f5f048f4652e9b3d4">a37451af</a></strong>
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<span>by Andreas Tille</span>
<i>at 2018-09-13T20:33:21Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix interpreter lines and add missing interpreter dependencies
</pre>
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<li>
<strong><a href="https://salsa.debian.org/med-team/libvcflib/commit/29d738fea0270369860809d72458c998dcb241bb">29d738fe</a></strong>
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<span>by Andreas Tille</span>
<i>at 2018-09-13T20:35:47Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
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<h4>3 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/libvcflib/compare/90f5e3fae4112fd3b9dc13b961cbf4903a34b748...29d738fea0270369860809d72458c998dcb241bb#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">libvcflib (1.0.0~rc2+dfsg-1) <span class="idiff left right">UNRELEASED</span>; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">libvcflib (1.0.0~rc2+dfsg-1) <span class="idiff left right">unstable</span>; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> [ Steffen Moeller ]</span>
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> * Created debian/upstream/metadata for references to</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -9,12 +9,14 @@ libvcflib (1.0.0~rc2+dfsg-1) UNRELEASED; urgency=medium</td>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> * debhelper 11</span>
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> * Point Vcs fields to salsa.debian.org</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> * Standards-Version: 4.2.1</span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> * Versioned Build-Depends: libfastahack-dev (>= 0.0+git20160702.bbc645f+dfsg-5~)</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> * Versioned Build-Depends:</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> libfastahack-dev (>= 0.0+git20160702.bbc645f+dfsg-5~)</span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> * Fix header file name</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> * Build-Depends: libbz2-dev</span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> * Fix installation target dir</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> * Fix interpreter lines and add missing interpreter dependencies</span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Thu, 13 Sep 2018 <span class="idiff left right">16:06:09</span> +0200</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Thu, 13 Sep 2018 <span class="idiff left right">22:34:23</span> +0200</span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext">libvcflib (1.0.0~rc1+dfsg1-6) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -69,7 +69,13 @@ Description: C++ library for parsing and manipulating VCF files (development)</td>
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<pre style="margin: 0;"> <span id="LC69" class="line" lang="plaintext">Package: libvcflib-tools</span>
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<pre style="margin: 0;"> <span id="LC70" class="line" lang="plaintext">Architecture: any</span>
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<pre style="margin: 0;"> <span id="LC71" class="line" lang="plaintext">Depends: ${shlibs:Depends},</span>
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<pre style="margin: 0;">-<span id="LC72" class="line" lang="plaintext"> ${misc:Depends}</span>
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<pre style="margin: 0;">+<span id="LC72" class="line" lang="plaintext"> ${misc:Depends},</span>
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<pre style="margin: 0;">+<span id="LC73" class="line" lang="plaintext"> python,</span>
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74
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<pre style="margin: 0;">+<span id="LC74" class="line" lang="plaintext"> r-base-core,</span>
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75
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<pre style="margin: 0;">+<span id="LC75" class="line" lang="plaintext"> r-cran-plyr,</span>
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76
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<pre style="margin: 0;">+<span id="LC76" class="line" lang="plaintext"> r-cran-ggplot2,</span>
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77
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<pre style="margin: 0;">+<span id="LC77" class="line" lang="plaintext"> r-cran-gridbase</span>
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="plaintext">Suggests: r-cran-pracma</span>
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<pre style="margin: 0;"> <span id="LC79" class="line" lang="plaintext">Description: C++ library for parsing and manipulating VCF files (tools)</span>
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<pre style="margin: 0;"> <span id="LC80" class="line" lang="plaintext"> The Variant Call Format (VCF) is a flat-file, tab-delimited textual format</span>
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<pre style="margin: 0;"> <span id="LC81" class="line" lang="plaintext"> intended to concisely describe reference-indexed variations between</span>
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<li id="8756c63497c8dc39f7773438edf53b220c773f67">
<a href="https://salsa.debian.org/med-team/libvcflib/compare/90f5e3fae4112fd3b9dc13b961cbf4903a34b748...29d738fea0270369860809d72458c998dcb241bb#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -28,6 +28,10 @@ override_dh_install:</td>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"> # install pkg-config file</span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext"> mkdir -p $(CURDIR)/debian/libvcflib-dev/usr/lib/$(DEB_HOST_MULTIARCH)/pkgconfig</span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"> mv libvcflib.pc $(CURDIR)/debian/libvcflib-dev/usr/lib/$(DEB_HOST_MULTIARCH)/pkgconfig</span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="plaintext"> rm -rf debian/*/usr/lib/vcflib/bin/*.R</span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="plaintext"> for pl in `grep -Rl '#!/usr/bin/env' debian/*/usr/*` ; do \</span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="plaintext"> sed -i '1s?^#!/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' $${pl} ; \</span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="plaintext"> done</span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext">override_dh_fixperms:</span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> dh_fixperms</span>
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