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GitLab

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<h3>

Andreas Tille pushed to branch upstream

at <a href="https://salsa.debian.org/med-team/nanopolish">Debian Med / nanopolish</a>

</h3>

<h4>

Commits:

</h4>

<ul>

<li>

<strong><a href="https://salsa.debian.org/med-team/nanopolish/commit/0a7f4f689a8b4d726872c214f0e57ec0cb116579">0a7f4f68</a></strong>

<div>

<span>by Andreas Tille</span>

<i>at 2018-09-13T08:41:10Z</i>

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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 0.10.2</pre>

</li>

</ul>

<h4>30 changed files:</h4>

<ul>

<li class="file-stats">

<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">

README.md

</a>

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<li class="file-stats">

<a href="#8b020ecbc6060870763ef64017f02bc5d900838f">

docs/source/_static/nanopolish-workflow.png

</a>

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<li class="file-stats">

<a href="#2d2c9c258608b174cf4fe4c3a5ad976a13fc99ca">

docs/source/manual.rst

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<li class="file-stats">

<a href="#b45aa22f89b9e15531f0c64508ede7a959246b8a">

docs/source/quickstart_consensus.rst

</a>

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<li class="file-stats">

<a href="#9b705ea324eb85f45dff0887ed64c5ccc76a5f52">

docs/source/quickstart_eventalign.rst

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<li class="file-stats">

<a href="#41660adec78594f229c01b0235788ce15e4799e4">

scripts/calculate_methylation_frequency.py

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<li class="file-stats">

<a href="#a179b8d0065d58637970381d3ea01facee70712c">

scripts/convert_all_models.py

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<li class="file-stats">

<a href="#084630baf4266f8ce63a4a492bf554e363d10a3a">

scripts/convert_model_to_header.py

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<li class="file-stats">

<a href="#b82970d590c4f6776248edd4f094f8d23e60f797">

scripts/extract_reads_aligned_to_region.py

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<li class="file-stats">

<a href="#a354eabac401b7f4ebb3a6bff8bfceafc31d80d9">

scripts/nanopolish_makerange.py

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<li class="file-stats">

<a href="#dae6e97a9a46a6a65d45ce6275cc6e9424e0077f">

scripts/nanopolish_merge.py

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<li class="file-stats">

<a href="#30f30a527501f95bc409aa2919835ea54b6e1bba">

<span class="new-file">

+

scripts/reestimate_polya_emissions.py

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<li class="file-stats">

<a href="#64a18d231424dfe0512d5d98702a6936dd2080e2">

src/alignment/nanopolish_eventalign.cpp

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<li class="file-stats">

<a href="#2c2d378f3c858273fcc789072d022d51957e8a98">

src/common/nanopolish_alphabet.h

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<li class="file-stats">

<a href="#f8c90a47caede8a711c7db96f3d9177546e1d70a">

src/common/nanopolish_bam_processor.cpp

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<li class="file-stats">

<a href="#45a2bcc01fb813f9245bb785a5bc3742f5eb9728">

src/common/nanopolish_bam_processor.h

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<li class="file-stats">

<a href="#58a43c64ead5187f569b28ec5ca98b313c48d7c7">

src/common/nanopolish_common.h

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<li class="file-stats">

<a href="#af0c7b92cdf7a0cc7d98c3103b7fba80623a54e1">

src/common/nanopolish_fast5_io.cpp

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<li class="file-stats">

<a href="#149ac5b0310ff017664f0645808befe6bda2ed83">

src/common/nanopolish_variant.cpp

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<li class="file-stats">

<a href="#4a3bd46afccd807332313419aac1bc6ab15f7c83">

src/common/nanopolish_variant.h

</a>

</li>

<li class="file-stats">

<a href="#f493b0116deac6a76c35face87eef44c7c5a7f40">

src/main/nanopolish.cpp

</a>

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<li class="file-stats">

<a href="#125985123a25635dc9e1a81a7b2849a0f12aa286">

src/nanopolish_call_methylation.cpp

</a>

</li>

<li class="file-stats">

<a href="#8a0296d2996ee7f7e9f9e1e26227edce94fe1d66">

src/nanopolish_call_variants.cpp

</a>

</li>

<li class="file-stats">

<a href="#9e1d6734082431b228580bb425603ab97d4c9d1d">

src/nanopolish_methyltrain.cpp

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<li class="file-stats">

<a href="#ecc53e18e8deb4dabc0e2ec2afe10d1d4c114f91">

src/nanopolish_phase_reads.cpp

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<li class="file-stats">

<a href="#3e7589d9f810f7643a9b0d6c2e885784173011a1">

<span class="new-file">

+

src/nanopolish_polya_estimator.cpp

</span>

</a>

</li>

<li class="file-stats">

<a href="#5e103c826f427fc04e3572bd66e2737a76dc86ad">

<span class="new-file">

+

src/nanopolish_polya_estimator.h

</span>

</a>

</li>

<li class="file-stats">

<a href="#139e119536c819f12477e3e1a37b1c316891e66f">

src/nanopolish_scorereads.cpp

</a>

</li>

<li class="file-stats">

<a href="#244f2077b9e28a5e6394deda0b7574b0f80f501c">

src/nanopolish_squiggle_read.cpp

</a>

</li>

<li class="file-stats">

<a href="#0cd5a7898ca2515cf6be03b2013fef5dda71d2cd">

src/nanopolish_squiggle_read.h

</a>

</li>

</ul>

<h5>The diff was not included because it is too large.</h5>

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