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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/augustus">Debian Med / augustus</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/augustus/commit/4bc1df4883c7df9bdcbe8ff39a23f347f144d8d3">4bc1df48</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-09-13T13:37:50Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Source download is now on Github
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/augustus/commit/6c3e3703efd11fd67c64977a767667d8c9ae1bcb">6c3e3703</a></strong>
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<span>by Andreas Tille</span>
<i>at 2018-09-13T13:48:25Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Standards-Version: 4.2.1
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/augustus/commit/d20e585d1e7b25f940117fd031ecc7455ab420c0">d20e585d</a></strong>
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<span>by Andreas Tille</span>
<i>at 2018-09-13T13:57:54Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
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<h4>3 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#68ef9f98c01c7eecd4c605cc26048a06f3304b79">
debian/watch
</a>
</li>
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/augustus/compare/2c55065c2ea5549fc043c30991cf101d15884040...d20e585d1e7b25f940117fd031ecc7455ab420c0#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">augustus (3.3.1+dfsg-2) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Team upload.</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * d/watch: Source download is now on Github</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> * Standards-Version: 4.2.1</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Thu, 13 Sep 2018 15:48:26 +0200</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">augustus (3.3.1+dfsg-1) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> [ Steffen Moeller ]</span>
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<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/augustus/compare/2c55065c2ea5549fc043c30991cf101d15884040...d20e585d1e7b25f940117fd031ecc7455ab420c0#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="mosel"><span class="n" style="color: #333;">Source</span><span class="p">:</span> <span class="n" style="color: #333;">augustus</span></span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="mosel"><span class="n" style="color: #333;">Section</span><span class="p">:</span> <span class="n" style="color: #333;">science</span></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="mosel"><span class="n" style="color: #333;">Priority</span><span class="p">:</span> <span class="n" style="color: #333;">optional</span></span>
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4
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<td class="diff-line-num new_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="mosel"><span class="n" style="color: #333;">Maintainer</span><span class="p">:</span> <span class="n" style="color: #333;">Debian</span> <span class="n" style="color: #333;">Med</span> <span class="n" style="color: #333;">Packaging</span> <span class="n" style="color: #333;">Team</span> <span class="p"><</span><span class="n" style="color: #333;">debian</span><span class="p">-</span><span class="n" style="color: #333;">med</span><span class="p">-</span><span class="n" style="color: #333;">packaging</span><span class="p">@</span><span class="n" style="color: #333;">lists</span><span class="p">.</span><span class="n" style="color: #333;">alioth</span><span class="p">.</span><span class="n" style="color: #333;">debian</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">></span></span>
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5
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<td class="diff-line-num new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="mosel"><span class="n" style="color: #333;">Uploaders</span><span class="p">:</span> <span class="n" style="color: #333;">Sascha</span> <span class="n" style="color: #333;">Steinbiss</span> <span class="p"><</span><span class="n" style="color: #333;">satta</span><span class="p">@</span><span class="n" style="color: #333;">debian</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">></span></span>
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6
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="mosel"><span class="n" style="color: #333;">Build</span><span class="p">-</span><span class="n" style="color: #333;">Depends</span><span class="p">:</span> <span class="n" style="color: #333;">debhelper</span> <span class="p">(>=</span> <span class="m" style="color: #099;">11</span><span class="p">),</span> <span class="n" style="color: #333;">libsqlite3</span><span class="p">-</span><span class="n" style="color: #333;">dev</span><span class="p">,</span> <span class="n" style="color: #333;">libboost</span><span class="p">-</span><span class="n" style="color: #333;">iostreams</span><span class="p">-</span><span class="n" style="color: #333;">dev</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="mosel"> <span class="n" style="color: #333;">zlib1g</span><span class="p">-</span><span class="n" style="color: #333;">dev</span><span class="p">,</span> <span class="n" style="color: #333;">libgsl</span><span class="p">-</span><span class="n" style="color: #333;">dev</span><span class="p">,</span> <span class="n" style="color: #333;">liblpsolve55</span><span class="p">-</span><span class="n" style="color: #333;">dev</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="mosel"> <span class="n" style="color: #333;">libbamtools</span><span class="p">-</span><span class="n" style="color: #333;">dev</span><span class="p">,</span> <span class="n" style="color: #333;">libbam</span><span class="p">-</span><span class="n" style="color: #333;">dev</span><span class="p">,</span> <span class="n" style="color: #333;">libbz2</span><span class="p">-</span><span class="n" style="color: #333;">dev</span><span class="p">,</span> <span class="n" style="color: #333;">lzma</span><span class="p">-</span><span class="n" style="color: #333;">dev</span><span class="p">,</span> <span class="n" style="color: #333;">libhts</span><span class="p">-</span><span class="n" style="color: #333;">dev</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="mosel"> <span class="n" style="color: #333;">libncurses5</span><span class="p">-</span><span class="n" style="color: #333;">dev</span><span class="p">,</span> <span class="n" style="color: #333;">asciidoctor</span></span>
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10
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="mosel"><span class="n" style="color: #333;">Standards</span><span class="p">-</span><span class="k" style="font-weight: 600;">Version</span><span class="p">:</span> <span class="m" style="color: #099;">4.1.4</span></span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="mosel"><span class="n" style="color: #333;">Section</span><span class="p">:</span> <span class="n" style="color: #333;">science</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="mosel"><span class="n" style="color: #333;">Priority</span><span class="p">:</span> <span class="n" style="color: #333;">optional</span></span>
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6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="mosel"><span class="n" style="color: #333;">Build</span><span class="p">-</span><span class="n" style="color: #333;">Depends</span><span class="p">:</span> <span class="n" style="color: #333;">debhelper</span> <span class="p">(>=</span> <span class="m" style="color: #099;">11</span><span class="p">),</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="mosel"> <span class="n" style="color: #333;">libsqlite3</span><span class="p">-</span><span class="n" style="color: #333;">dev</span><span class="p">,</span></span>
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8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="mosel"> <span class="n" style="color: #333;">libboost</span><span class="p">-</span><span class="n" style="color: #333;">iostreams</span><span class="p">-</span><span class="n" style="color: #333;">dev</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="mosel"> <span class="n" style="color: #333;">zlib1g</span><span class="p">-</span><span class="n" style="color: #333;">dev</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="mosel"> <span class="n" style="color: #333;">libgsl</span><span class="p">-</span><span class="n" style="color: #333;">dev</span><span class="p">,</span></span>
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11
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="mosel"> <span class="n" style="color: #333;">liblpsolve55</span><span class="p">-</span><span class="n" style="color: #333;">dev</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="mosel"> <span class="n" style="color: #333;">libbamtools</span><span class="p">-</span><span class="n" style="color: #333;">dev</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="mosel"> <span class="n" style="color: #333;">libbam</span><span class="p">-</span><span class="n" style="color: #333;">dev</span><span class="p">,</span></span>
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14
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="mosel"> <span class="n" style="color: #333;">libbz2</span><span class="p">-</span><span class="n" style="color: #333;">dev</span><span class="p">,</span></span>
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15
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="mosel"> <span class="n" style="color: #333;">lzma</span><span class="p">-</span><span class="n" style="color: #333;">dev</span><span class="p">,</span></span>
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16
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="mosel"> <span class="n" style="color: #333;">libhts</span><span class="p">-</span><span class="n" style="color: #333;">dev</span><span class="p">,</span></span>
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17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="mosel"> <span class="n" style="color: #333;">libncurses5</span><span class="p">-</span><span class="n" style="color: #333;">dev</span><span class="p">,</span></span>
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18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="mosel"> <span class="n" style="color: #333;">asciidoctor</span></span>
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<td class="diff-line-num new new_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="mosel"><span class="n" style="color: #333;">Standards</span><span class="p">-</span><span class="k" style="font-weight: 600;">Version</span><span class="p">:</span> <span class="m" style="color: #099;">4.2.1</span></span>
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11
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<td class="diff-line-num new_line" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
20
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="mosel"><span class="n" style="color: #333;">Vcs</span><span class="p">-</span><span class="n" style="color: #333;">Browser</span><span class="p">:</span> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">salsa</span><span class="p">.</span><span class="n" style="color: #333;">debian</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">med</span><span class="p">-</span><span class="n" style="color: #333;">team</span><span class="p">/</span><span class="n" style="color: #333;">augustus</span></span>
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12
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<td class="diff-line-num new_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
21
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="mosel"><span class="n" style="color: #333;">Vcs</span><span class="p">-</span><span class="n" style="color: #333;">Git</span><span class="p">:</span> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">salsa</span><span class="p">.</span><span class="n" style="color: #333;">debian</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">med</span><span class="p">-</span><span class="n" style="color: #333;">team</span><span class="p">/</span><span class="n" style="color: #333;">augustus</span><span class="p">.</span><span class="n" style="color: #333;">git</span></span>
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13
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="mosel"><span class="n" style="color: #333;">Homepage</span><span class="p">:</span> <span class="n" style="color: #333;">http</span><span class="p">://</span><span class="n" style="color: #333;">bioinf</span><span class="p">.</span><span class="n" style="color: #333;">uni</span><span class="p">-</span><span class="n" style="color: #333;">greifswald</span><span class="p">.</span><span class="n" style="color: #333;">de</span><span class="p">/</span><span class="n" style="color: #333;">augustus</span><span class="p">/</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -41,8 +50,8 @@ Description: data files for AUGUSTUS</td>
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41
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="mosel"></span>
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<td class="diff-line-num old_line" data-linenumber="42" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
42
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="mosel"><span class="k" style="font-weight: 600;">Package</span><span class="p">:</span> <span class="n" style="color: #333;">augustus</span><span class="p">-</span><span class="n" style="color: #333;">doc</span></span>
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<td class="diff-line-num old_line" data-linenumber="43" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
43
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<td class="diff-line-num new_line" data-linenumber="52" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
52
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="mosel"><span class="n" style="color: #333;">Architecture</span><span class="p">:</span> <span class="n" style="color: #333;">all</span></span>
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44
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<pre style="margin: 0;">-<span id="LC44" class="line" lang="mosel"><span class="n" style="color: #333;">Depends</span><span class="p">:</span> <span class="p">${</span><span class="n" style="color: #333;">misc</span><span class="p">:</span><span class="n" style="color: #333;">Depends</span><span class="p">}</span></span>
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45
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="mosel"><span class="n" style="color: #333;">Section</span><span class="p">:</span> <span class="n" style="color: #333;">doc</span></span>
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="mosel"><span class="n" style="color: #333;">Depends</span><span class="p">:</span> <span class="p">${</span><span class="n" style="color: #333;">misc</span><span class="p">:</span><span class="n" style="color: #333;">Depends</span><span class="p">}</span></span>
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46
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="mosel"><span class="n" style="color: #333;">Description</span><span class="p">:</span> <span class="n" style="color: #333;">documentation</span> <span class="n" style="color: #333;">files</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">AUGUSTUS</span></span>
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<td class="diff-line-num old_line" data-linenumber="47" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
47
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56
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="mosel"> <span class="n" style="color: #333;">This</span> <span class="k" style="font-weight: 600;">package</span> <span class="n" style="color: #333;">contains</span> <span class="n" style="color: #333;">documentation</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">AUGUSTUS</span><span class="p">:</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">comprehensive</span> <span class="n" style="color: #333;">manual</span><span class="p">-</span><span class="n" style="color: #333;">style</span></span>
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48
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="mosel"> <span class="n" style="color: #333;">README</span> <span class="n" style="color: #333;">both</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">AUGUSTUS</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">general</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">well</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">its</span> <span class="n" style="color: #333;">comparative</span> <span class="n" style="color: #333;">gene</span></span>
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<a href="https://salsa.debian.org/med-team/augustus/compare/2c55065c2ea5549fc043c30991cf101d15884040...d20e585d1e7b25f940117fd031ecc7455ab420c0#68ef9f98c01c7eecd4c605cc26048a06f3304b79"><strong>debian/watch</strong></a>
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1
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">version=<span class="idiff left right">3</span></span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">version=<span class="idiff left right">4</span></span>
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2
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">opts="repacksuffix=+dfsg,dversionmangle=s/\+dfsg//g,repack,compression=xz" \</span>
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4
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext"> <span class="idiff left right">http://bioinf.uni-greifswald.de/augustus/binaries/augustus-(.*)\.tar\.gz</span></span></pre>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> <span class="idiff left right"> https://github.com/Gaius-Augustus/Augustus/releases .*/archive/v(\d[.\d]+)[-tag0-9]*@ARCHIVE_EXT@</span></span></pre>
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