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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/libvcflib">Debian Med / libvcflib</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/libvcflib/commit/564aed27e98eae6e6c22821bcdbd5faa4f2c7d13">564aed27</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-09-13T14:05:37Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.0.0~rc2+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libvcflib/commit/fd7559e4ed48cd4f52714facdc165444909cef87">fd7559e4</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-09-13T14:06:09Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/1.0.0_rc2+dfsg'
Update to upstream version '1.0.0~rc2+dfsg'
with Debian dir 9fe8c337f1f0993df726a7da3ba4862c77c7e21b</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libvcflib/commit/22955905c0c29e507a9eb3bef41ac383dd68ba9b">22955905</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-09-13T14:06:09Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libvcflib/commit/0e50ed1df0516588813faa2070d8ddd694df20ff">0e50ed1d</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-09-13T14:06:09Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debhelper 11
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libvcflib/commit/f801e99aba94788cab03fe1f0ba9eb0b12d32c6b">f801e99a</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-09-13T14:07:14Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Point Vcs fields to salsa.debian.org
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libvcflib/commit/bb504d1e21c0a38d51a5a630af51faafbc934ad6">bb504d1e</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-09-13T14:07:14Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Standards-Version: 4.2.1
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libvcflib/commit/50fcde74c80889907783a3fd2887c2eb3e76c626">50fcde74</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-09-13T14:23:11Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Adjust patches to new upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libvcflib/commit/9b9a7502321a5412d9b7daba659910a563ae43ae">9b9a7502</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-09-13T17:34:51Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Versioned Build-Depends: libfastahack-dev (>= 0.0+git20160702.bbc645f+dfsg-5~)
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libvcflib/commit/4da694e26236ddbf2f69e2fc5879a3e4c53a96c5">4da694e2</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-09-13T17:36:16Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix header file name
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libvcflib/commit/71690e333b769beead7262c266c5630662cda3bc">71690e33</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-09-13T18:13:41Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Typo
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libvcflib/commit/af913cca037cabdae02234c8b8817af8c13bbbf5">af913cca</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-09-13T18:14:39Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Build-Depends: libbz2-dev
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libvcflib/commit/5800645e7cb914a2a4d5830f611ae2dbcbde4e42">5800645e</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-09-13T18:38:26Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix installation target dir
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libvcflib/commit/90f5e3fae4112fd3b9dc13b961cbf4903a34b748">90f5e3fa</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-09-13T19:18:57Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix dir for R packages
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#7445606fbf8f3683cd42bdc54b05d7a0bc2dfc44">
.gitmodules
</a>
</li>
<li class="file-stats">
<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">
.travis.yml
</a>
</li>
<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
Makefile
</a>
</li>
<li class="file-stats">
<a href="#91cc2532f591671fe7cb5aec7b8e6c99fe96d6ec">
<span class="deleted-file">
−
Makefile.old
</span>
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
debian/compat
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#57d9ff69ed8009018744730cac30075db295a453">
debian/libvcflib-tools.install
</a>
</li>
<li class="file-stats">
<a href="#fe47d4b238ced8cd1145f79eb4aa95d5783dc101">
debian/patches/filevercmp.h.patch
</a>
</li>
<li class="file-stats">
<a href="#7171e6ef5cef9a033b5bb67e0a1a27959a7c987f">
<span class="new-file">
+
debian/patches/fix_installation.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#ea7bb8863c58f94a4fb117eb619181c1190e9d35">
<span class="new-file">
+
debian/patches/fix_ssw_cpp_header_name.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#8390ecfcfabfca8e83a5a8d931f22f0bf446f807">
debian/patches/intervaltree.patch
</a>
</li>
<li class="file-stats">
<a href="#085e8a46ac6788f0358770a5583b2511822b5d16">
debian/patches/keep_R_files.patch
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#5dd3e65e8bf2a49f7e8db4bc4087719b91091f7c">
debian/patches/shared_lib.patch
</a>
</li>
<li class="file-stats">
<a href="#f73c14546ec70508e3c3d3efcb88f0ebad9f1f73">
debian/patches/use_debian_packaged_fastahack.patch
</a>
</li>
<li class="file-stats">
<a href="#e847dec435c3030822de2161ab48d6c5b17c318d">
debian/patches/use_debian_packaged_libssw.patch
</a>
</li>
<li class="file-stats">
<a href="#947e072c91575647e20c8e6e1b441e13fbe6fe5b">
debian/patches/use_debian_packaged_smithwaterman.patch
</a>
</li>
<li class="file-stats">
<a href="#2026da8936a56f81ff5288c425be00e819243775">
debian/patches/use_debian_packaged_tabixpp.patch
</a>
</li>
<li class="file-stats">
<a href="#6b593aa195c126d44fb0a13dc403a55db135c982">
<span class="new-file">
+
samples/1kg-phaseIII-v5a.20130502.genotypes.chr22-16-16.5mb.vcf.gz
</span>
</a>
</li>
<li class="file-stats">
<a href="#24fbb95d269fbac057a8f6893ae2e287a2dff8f1">
<span class="new-file">
+
samples/1kg-phaseIII-v5a.20130502.genotypes.chr22-16-16.5mb.vcf.gz.tbi
</span>
</a>
</li>
<li class="file-stats">
<a href="#62ee694856dab1db4de446352e00e3cc11a75b82">
<span class="new-file">
+
samples/sample.compressed.vcf.gz
</span>
</a>
</li>
<li class="file-stats">
<a href="#3d1e86462bfa1f9493ecd211b0014dbadcec23f0">
<span class="new-file">
+
samples/sample.compressed.vcf.gz.tbi
</span>
</a>
</li>
<li class="file-stats">
<a href="#cb3d3682525f9af302865f0cfe8f58e91b35c387">
<span class="new-file">
+
scripts/bed2region
</span>
</a>
</li>
<li class="file-stats">
<a href="#da4a90affb588b918ca448cfab86cfab84dd9d00">
<span class="new-file">
+
scripts/bgziptabix
</span>
</a>
</li>
<li class="file-stats">
<a href="#41d8f15775c7d5d55bfdca00e80b969ade305969">
bin/plotBfst.R
→
scripts/plotBfst.R
</a>
</li>
<li class="file-stats">
<a href="#6398be813a5cf966e53ff51eea85cdc61b6edc6b">
bin/plotHapLrt.R
→
scripts/plotHapLrt.R
</a>
</li>
<li class="file-stats">
<a href="#4bb0038f56451281ff769cb43ab08cc87aac5156">
bin/plotHaplotypes.R
→
scripts/plotHaplotypes.R
</a>
</li>
<li class="file-stats">
<a href="#daee2bb13bec4ac970fea7ef4bc2cd4d1b848346">
bin/plotPfst.R
→
scripts/plotPfst.R
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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