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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/nanopolish">Debian Med / nanopolish</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/nanopolish/commit/0a7f4f689a8b4d726872c214f0e57ec0cb116579">0a7f4f68</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-09-13T08:41:10Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 0.10.2</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/nanopolish/commit/3c53e87f15860d6acfd772078627600b9a43ce1d">3c53e87f</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-09-13T08:41:31Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/0.10.2'
Update to upstream version '0.10.2'
with Debian dir 49c23eaf9b572fe425f060881d3478eb89a9e8b9</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/nanopolish/commit/49387cc0d921e8bf5ed1af0de2ace7b0636cc543">49387cc0</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-09-13T08:41:31Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/nanopolish/commit/6c8cf5617adbaa18de0b95aba44e49ad0bc9e400">6c8cf561</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-09-13T08:41:31Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debhelper 11
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/nanopolish/commit/88b0ac6b963c9d66ad113d4215eeb3498bf8603b">88b0ac6b</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-09-13T08:43:36Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Point Vcs fields to salsa.debian.org
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/nanopolish/commit/78cc59d431dcc3d040ec1af5f26a4e6209219853">78cc59d4</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-09-13T08:43:36Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Standards-Version: 4.2.1
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/nanopolish/commit/3aa2136d89708dfb505988fecce4d8242db03f83">3aa2136d</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-09-13T09:08:45Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Adapt patches
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/nanopolish/commit/665c0db10ef717ffe62a5a8e8a1a21da70d8fb0a">665c0db1</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-09-13T09:21:28Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix path for Perl interpreter
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/nanopolish/commit/4d41ad2b8f465f92cf56fa4e4132085ca5dd7947">4d41ad2b</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-09-13T09:37:17Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Enhance long description
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/nanopolish/commit/4adb95026e960522ceb331f96c8ea75c15a0c9e2">4adb9502</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-09-13T09:41:45Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
debian/compat
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#ceda9c89e9ce1eb1cd91cabdbc995cf525eddb63">
debian/patches/hdf5-groupcheck.patch
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
<li class="file-stats">
<a href="#8b020ecbc6060870763ef64017f02bc5d900838f">
docs/source/_static/nanopolish-workflow.png
</a>
</li>
<li class="file-stats">
<a href="#2d2c9c258608b174cf4fe4c3a5ad976a13fc99ca">
docs/source/manual.rst
</a>
</li>
<li class="file-stats">
<a href="#b45aa22f89b9e15531f0c64508ede7a959246b8a">
docs/source/quickstart_consensus.rst
</a>
</li>
<li class="file-stats">
<a href="#9b705ea324eb85f45dff0887ed64c5ccc76a5f52">
docs/source/quickstart_eventalign.rst
</a>
</li>
<li class="file-stats">
<a href="#41660adec78594f229c01b0235788ce15e4799e4">
scripts/calculate_methylation_frequency.py
</a>
</li>
<li class="file-stats">
<a href="#a179b8d0065d58637970381d3ea01facee70712c">
scripts/convert_all_models.py
</a>
</li>
<li class="file-stats">
<a href="#084630baf4266f8ce63a4a492bf554e363d10a3a">
scripts/convert_model_to_header.py
</a>
</li>
<li class="file-stats">
<a href="#b82970d590c4f6776248edd4f094f8d23e60f797">
scripts/extract_reads_aligned_to_region.py
</a>
</li>
<li class="file-stats">
<a href="#a354eabac401b7f4ebb3a6bff8bfceafc31d80d9">
scripts/nanopolish_makerange.py
</a>
</li>
<li class="file-stats">
<a href="#dae6e97a9a46a6a65d45ce6275cc6e9424e0077f">
scripts/nanopolish_merge.py
</a>
</li>
<li class="file-stats">
<a href="#30f30a527501f95bc409aa2919835ea54b6e1bba">
<span class="new-file">
+
scripts/reestimate_polya_emissions.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#64a18d231424dfe0512d5d98702a6936dd2080e2">
src/alignment/nanopolish_eventalign.cpp
</a>
</li>
<li class="file-stats">
<a href="#2c2d378f3c858273fcc789072d022d51957e8a98">
src/common/nanopolish_alphabet.h
</a>
</li>
<li class="file-stats">
<a href="#f8c90a47caede8a711c7db96f3d9177546e1d70a">
src/common/nanopolish_bam_processor.cpp
</a>
</li>
<li class="file-stats">
<a href="#45a2bcc01fb813f9245bb785a5bc3742f5eb9728">
src/common/nanopolish_bam_processor.h
</a>
</li>
<li class="file-stats">
<a href="#58a43c64ead5187f569b28ec5ca98b313c48d7c7">
src/common/nanopolish_common.h
</a>
</li>
<li class="file-stats">
<a href="#af0c7b92cdf7a0cc7d98c3103b7fba80623a54e1">
src/common/nanopolish_fast5_io.cpp
</a>
</li>
<li class="file-stats">
<a href="#149ac5b0310ff017664f0645808befe6bda2ed83">
src/common/nanopolish_variant.cpp
</a>
</li>
<li class="file-stats">
<a href="#4a3bd46afccd807332313419aac1bc6ab15f7c83">
src/common/nanopolish_variant.h
</a>
</li>
<li class="file-stats">
<a href="#f493b0116deac6a76c35face87eef44c7c5a7f40">
src/main/nanopolish.cpp
</a>
</li>
<li class="file-stats">
<a href="#125985123a25635dc9e1a81a7b2849a0f12aa286">
src/nanopolish_call_methylation.cpp
</a>
</li>
<li class="file-stats">
<a href="#8a0296d2996ee7f7e9f9e1e26227edce94fe1d66">
src/nanopolish_call_variants.cpp
</a>
</li>
<li class="file-stats">
<a href="#9e1d6734082431b228580bb425603ab97d4c9d1d">
src/nanopolish_methyltrain.cpp
</a>
</li>
<li class="file-stats">
<a href="#ecc53e18e8deb4dabc0e2ec2afe10d1d4c114f91">
src/nanopolish_phase_reads.cpp
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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<p style="font-size: small; color: #777;">
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