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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/mothur">Debian Med / mothur</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/mothur/commit/69b1e0ffbcc410445550a0663c54e7d08427678f">69b1e0ff</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-09-14T08:26:43Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Droping MPI support from Debian package
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/mothur/commit/f7069afa6daf7589b0e47daa64a9f96d3ebb53ca">f7069afa</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-09-14T08:27:52Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Remove Tim Booth from Uploaders
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/mothur/commit/9e262bd31019c14e6d2f88e74227b37852b701e4">9e262bd3</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-09-14T08:28:35Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Drop unneeded get-orig-source target
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/mothur/commit/65fab91b8abb7a82d2d5e720bf41dbae2c11456f">65fab91b</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-09-14T08:29:24Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Standards-Version: 4.2.1
</pre>
</li>
</ul>
<h4>6 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#a32f11e04379d98338743603ad429277385dc3ef">
debian/README.Source
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#2c5b8c508bc29a2b0806d7583edbfccf0c115886">
<span class="deleted-file">
−
debian/mothur-mpi.install
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<li class="file-stats">
<a href="#96d413152ff92b272b8c9c5d0985e3f867515696">
<span class="deleted-file">
−
debian/mothur-mpi.links
</span>
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="a32f11e04379d98338743603ad429277385dc3ef">
<a href="https://salsa.debian.org/med-team/mothur/compare/0362eeda494d593e077494c462ae6f375e111e1c...65fab91b8abb7a82d2d5e720bf41dbae2c11456f#a32f11e04379d98338743603ad429277385dc3ef"><strong>debian/README.Source</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Mothur for Debian</span>
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<td class="diff-line-num new new_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">=================</span>
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<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"></span>
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<td class="diff-line-num new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">Hints for using ccache with mothur build</span>
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<td class="diff-line-num new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">-----------------------------------------</span>
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<td class="diff-line-num new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -18,3 +21,20 @@ but note MPICXX which is hooking into the MPI compiler,</td>
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<td class="diff-line-num new_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext">which is not replaced by ccache.</span>
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<td class="diff-line-num old_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> -- Tomasz Buchert <toma@buchert.pl>, Fri, 4 Sep 2015 10:28:58 +0200</span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="27" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext">The MPI version was droped upstream</span>
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<td class="diff-line-num new new_line" data-linenumber="28" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext">-----------------------------------</span>
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<td class="diff-line-num new new_line" data-linenumber="29" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="30" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext">commit 1e5f8e2927fca338e659621ac24cd9166705c3a2 refs/tags/v1.37.0</span>
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<td class="diff-line-num new new_line" data-linenumber="31" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="plaintext">Author: Sarah Westcott <mothur.westcott@gmail.com></span>
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<td class="diff-line-num new old_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="32" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="plaintext">Date: Wed Aug 19 12:16:49 2015 -0400</span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="plaintext"> Removes MPI source code</span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="plaintext"> Issue #144</span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="plaintext"> </span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="plaintext"> The MPI version is slower and requires dual maintenance. No advantage to keeping it.</span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Fri, 14 Sep 2018 10:01:35 +0200</span></pre>
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<a href="https://salsa.debian.org/med-team/mothur/compare/0362eeda494d593e077494c462ae6f375e111e1c...65fab91b8abb7a82d2d5e720bf41dbae2c11456f#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">mothur (1.40.5-2) UNRELEASED; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Upstream droped MPI support since it is slower and requires dual</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> maintenance (see README.Debian) Thus droping MPI support from</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> Debian package</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> CLoses: #908786</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> * Remove Tim Booth from Uploaders (Tim, thanks for your work on this</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> package)</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> * Drop unneeded get-orig-source target</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> * Standards-Version: 4.2.1</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Fri, 14 Sep 2018 10:01:35 +0200</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext">mothur (1.40.5-1) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> * New upstream version 1.40.5</span>
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<a href="https://salsa.debian.org/med-team/mothur/compare/0362eeda494d593e077494c462ae6f375e111e1c...65fab91b8abb7a82d2d5e720bf41dbae2c11456f#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2,7 +2,6 @@ Source: mothur</td>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">Uploaders: Steffen Moeller <moeller@debian.org>,</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> Andreas Tille <tille@debian.org>,</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> Tim Booth <tbooth@ceh.ac.uk>,</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"> Tomasz Buchert <tomasz@debian.org></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">Section: science</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">Priority: optional</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -12,14 +11,15 @@ Build-Depends: debhelper (>= 11),</td>
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> libopenmpi-dev,</span>
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<td class="diff-line-num old_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> libreadline-dev,</span>
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<td class="diff-line-num old_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> zlib1g-dev</span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext">Standards-Version: <span class="idiff left right">3.9.8</span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext">Standards-Version: <span class="idiff left right">4.2.1</span></span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/mothur</span>
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<td class="diff-line-num old_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/mothur.git</span>
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<td class="diff-line-num old_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext">Homepage: http://www.mothur.org</span>
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<td class="diff-line-num old_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext">Package: mothur</span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext">Architecture: any</span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="plaintext">Depends: ${misc:Depends}, ${shlibs:Depends}</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext">Depends: ${misc:Depends},</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> ${shlibs:Depends}</span>
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<td class="diff-line-num old_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext">Conflicts: uchime</span>
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<td class="diff-line-num old_line" data-linenumber="24" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext">Provides: uchime</span>
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<td class="diff-line-num old_line" data-linenumber="25" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext">Description: sequence analysis suite for research on microbiota</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="29" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="29" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -29,18 +29,3 @@ Description: sequence analysis suite for research on microbiota</td>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext"> treeclimber, s-libshuff, unifrac, and much more. In addition to improving</span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"> the flexibility of these algorithms, a number of other features including</span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> calculators and visualization tools were added.</span></pre>
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="plaintext">Package: mothur-mpi</span>
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<pre style="margin: 0;">-<span id="LC34" class="line" lang="plaintext">Architecture: any</span>
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="plaintext">Depends: mothur, openmpi-bin, ${misc:Depends}, ${shlibs:Depends}</span>
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<pre style="margin: 0;">-<span id="LC36" class="line" lang="plaintext">Description: mpi-enabled binary for mothur</span>
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<pre style="margin: 0;">-<span id="LC37" class="line" lang="plaintext"> Mothur seeks to develop a single piece of open-source, expandable</span>
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38
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<pre style="margin: 0;">-<span id="LC38" class="line" lang="plaintext"> software to fill the bioinformatics needs of the microbial ecology</span>
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39
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="plaintext"> community. It has incorporated the functionality of dotur, sons,</span>
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<pre style="margin: 0;">-<span id="LC40" class="line" lang="plaintext"> treeclimber, s-libshuff, unifrac, and much more. In addition to improving</span>
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<pre style="margin: 0;">-<span id="LC41" class="line" lang="plaintext"> the flexibility of these algorithms, a number of other features including</span>
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<pre style="margin: 0;">-<span id="LC42" class="line" lang="plaintext"> calculators and visualization tools were added.</span>
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<pre style="margin: 0;">-<span id="LC43" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;">-<span id="LC44" class="line" lang="plaintext"> Provides the MPI-enabled binary for Mothur</span>
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<pre style="margin: 0;">-<span id="LC45" class="line" lang="plaintext"> This is recommended for operations like shhh.flows which will be</span>
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<pre style="margin: 0;">-<span id="LC46" class="line" lang="plaintext"> very slow on a single processor.</span></pre>
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<a href="https://salsa.debian.org/med-team/mothur/compare/0362eeda494d593e077494c462ae6f375e111e1c...65fab91b8abb7a82d2d5e720bf41dbae2c11456f#2c5b8c508bc29a2b0806d7583edbfccf0c115886"><strong>debian/mothur-mpi.install</strong>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="php"><span class="nx">mothur</span><span class="o" style="font-weight: 600;">-</span><span class="nx">mpi</span> <span class="o" style="font-weight: 600;">/</span><span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">bin</span></span></pre>
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<a href="https://salsa.debian.org/med-team/mothur/compare/0362eeda494d593e077494c462ae6f375e111e1c...65fab91b8abb7a82d2d5e720bf41dbae2c11456f#96d413152ff92b272b8c9c5d0985e3f867515696"><strong>debian/mothur-mpi.links</strong>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">usr/share/man/man1/mothur.1.gz usr/share/man/man1/mothur-mpi.1.gz</span></pre>
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<a href="https://salsa.debian.org/med-team/mothur/compare/0362eeda494d593e077494c462ae6f375e111e1c...65fab91b8abb7a82d2d5e720bf41dbae2c11456f#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -19,20 +19,13 @@ export DEB_BUILD_MAINT_OPTIONS = hardening=+all</td>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> dh $@</span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext">override_dh_auto_build:</span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="plaintext"> dh_auto_build -- 64BIT_VERSION=$(64BIT_VERSION) USEMPI=yes</span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="plaintext"> mv mothur mothur-mpi</span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="plaintext"> make clean</span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="plaintext"> dh_auto_build -- 64BIT_VERSION=$(64BIT_VERSION) USEMPI=no</span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="plaintext"> # cp mothur mothur-mpi # XXX: debug</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> dh_auto_build -- 64BIT_VERSION=$(64BIT_VERSION)</span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext">override_dh_auto_install:</span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> true</span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext">#Cleaning needs help right now</span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext">override_dh_auto_clean:</span>
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="plaintext"> rm -f mothur<span class="idiff left right"> mothur-mpi</span></span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"> rm -f mothur</span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"> make clean</span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> ( cd source/uchime_src && rm -f *.o mk.stdout mk.stderr tmp.stderr )</span></pre>
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<pre style="margin: 0;">-<span id="LC36" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC37" class="line" lang="plaintext">get-orig-source:</span>
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<pre style="margin: 0;">-<span id="LC38" class="line" lang="plaintext"> uscan --verbose --force-download</span></pre>
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