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<h3>
Andreas Tille pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/picard-tools">Debian Med / picard-tools</a>
</h3>
<h4>
Commits:
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<strong><a href="https://salsa.debian.org/med-team/picard-tools/commit/3c94ec9479705d58bfa23dc753278bd36d7236a8">3c94ec94</a></strong>
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<span>by Andreas Tille</span>
<i>at 2018-09-17T13:12:27Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.18.14+dfsg</pre>
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<h4>30 changed files:</h4>
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.classpath
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.project
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<a href="#6651ddff6eb82c840ced7c1dddee15c6e1913dd4">
Dockerfile
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<a href="#f07866736216be0ee2aba49e392191aeae700a35">
build.gradle
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<a href="#6909ff640be7be2de90d276c91938e5bcd21a003">
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build_push_docker.sh
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project/plugins.sbt
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<a href="#025d792d6ca480e8aa317c5d5200191baa96e8b1">
src/main/java/picard/analysis/AbstractWgsMetricsCollector.java
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<a href="#bac4c9ac8d5063b8b48c84e1a30915ee1d4b4523">
src/main/java/picard/analysis/AlignmentSummaryMetrics.java
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<a href="#2269f0b41b877093e5ef84c96198be511137ddbc">
src/main/java/picard/analysis/CollectMultipleMetrics.java
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<a href="#ef17ffbbef833877458003eb2f12fc07610dfc1e">
src/main/java/picard/analysis/CollectWgsMetrics.java
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<a href="#9a97429e0fb33ada2f86ffefa4c68b6a1554dab7">
src/main/java/picard/analysis/CollectWgsMetricsWithNonZeroCoverage.java
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<a href="#02bcb093ea28463e03e7455edcb86c49c1853e64">
src/main/java/picard/analysis/MergeableMetricBase.java
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<a href="#8e4878a852074154d4ceb788ddcf68b23642354f">
src/main/java/picard/analysis/TheoreticalSensitivity.java
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src/main/java/picard/analysis/TheoreticalSensitivityMetrics.java
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<a href="#9af105d9cdd2d7f8a89fb06cade4843d35624ea0">
src/main/java/picard/analysis/directed/CollectTargetedMetrics.java
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<a href="#7dc078e8a631cb6833fea5fe97f4d605fadaef7f">
src/main/java/picard/analysis/directed/TargetMetricsCollector.java
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<a href="#ad1f1dc5e8b9664bb405dbc8386d79b194eada83">
src/main/java/picard/analysis/replicates/CollectIndependentReplicateMetrics.java
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<a href="#1fa2570ced8b3c33e4b3bd1f563ab3786ec64e29">
src/main/java/picard/cmdline/CommandLineProgram.java
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<a href="#b0fb6d369c897904de774cb77b8f07d244dcea78">
src/main/java/picard/cmdline/CommandLineSyntaxTranslater.java
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<a href="#ca0acf17531387f8a95053d24c87c9deed09c2f7">
src/main/java/picard/cmdline/PicardCommandLine.java
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<a href="#318f759ec0d8287f1a6a480e32feee8b65b0f5ff">
src/main/java/picard/illumina/ClusterDataToSamConverter.java
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<a href="#f1b1fc756d973bb194dc26f790b48f9b4f9252e9">
src/main/java/picard/illumina/CollectIlluminaLaneMetrics.java
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<a href="#78374cf30ad691b96619a69465e04cf12ec04ddf">
src/main/java/picard/illumina/ExtractIlluminaBarcodes.java
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<a href="#4e3534a75dfd4f65811dba40ad728ca9e29c2844">
src/main/java/picard/illumina/IlluminaBasecallsToSam.java
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<a href="#776518b1ba71a408ae21f8028798a4177a07da9a">
src/main/java/picard/illumina/NewIlluminaBasecallsConverter.java
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<a href="#06fd3f45c370868086e1442ee218160c25d09cd8">
src/main/java/picard/illumina/parser/TileMetricsUtil.java
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<a href="#ac6b5822fce9db2de7ad467b056318fc5f8bbd59">
src/main/java/picard/illumina/parser/readers/TileMetricsOutReader.java
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<a href="#692f209bd7b5b89a25681528d8ed4bb5c5768227">
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src/main/java/picard/nio/PathProvider.java
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<a href="#053dfd8dba5135bfe7b20c2ce7ce296f5829a06c">
src/main/java/picard/sam/CreateSequenceDictionary.java
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<a href="#7882db8ab241e139efe87ded3c26da9c35a5cb4e">
src/main/java/picard/sam/DuplicationMetrics.java
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<h5>The diff was not included because it is too large.</h5>
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