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<h3>
Andreas Tille pushed to branch use_gradle
at <a href="https://salsa.debian.org/med-team/libsis-jhdf5-java">Debian Med / libsis-jhdf5-java</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/libsis-jhdf5-java/commit/db984822e24beaa5ac4318c40630644ef5800a04">db984822</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-09-20T06:34:14Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Use jaxb
</pre>
</li>
</ul>
<h4>4 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#ee54dc79014b3def963898e50c98877d46c6b27e">
debian/patches/use_debian_packaged_libs.patch
</a>
</li>
<li class="file-stats">
<a href="#b8b6c0d9dd3dd920daab2cc9c61c9854b5800004">
<span class="new-file">
+
debian/patches/use_jaxb.patch
</span>
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/libsis-jhdf5-java/commit/db984822e24beaa5ac4318c40630644ef5800a04#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -13,6 +13,7 @@ Build-Depends: debhelper (>= 11~),</td>
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> libcommons-lang-java,</span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> libcommons-io-java,</span>
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<td class="diff-line-num old_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> libecj-java,</span>
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<td class="diff-line-num new old_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> libjaxb-java,</span>
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<td class="diff-line-num old_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> libsis-base-java (>= 18.08.0~),</span>
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<td class="diff-line-num old_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> libhdf5-dev (>> 1.8.13),</span>
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<td class="diff-line-num old_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> libargs4j-java,</span>
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<li id="bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
<a href="https://salsa.debian.org/med-team/libsis-jhdf5-java/commit/db984822e24beaa5ac4318c40630644ef5800a04#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">use_debian_packaged_libs.patch</span>
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<td class="diff-line-num new new_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">use_jaxb.patch</span></pre>
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<li id="ee54dc79014b3def963898e50c98877d46c6b27e">
<a href="https://salsa.debian.org/med-team/libsis-jhdf5-java/commit/db984822e24beaa5ac4318c40630644ef5800a04#ee54dc79014b3def963898e50c98877d46c6b27e"><strong>debian/patches/use_debian_packaged_libs.patch</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/.classpath</span></span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/.classpath</span></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -4,18 +4,1<span class="idiff left right">7</span> @@</span></span>
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<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -4,18 +4,1<span class="idiff left right">8</span> @@</span></span>
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<td class="diff-line-num new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="diff"> <classpathentry kind="src" path="sourceExamples/java"/></span>
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<td class="diff-line-num new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="diff"> <classpathentry kind="src" path="sourceTest/java"/></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="diff"> <classpathentry kind="con" path="org.eclipse.jdt.junit.JUNIT_CONTAINER/4"/></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -18,6 +18,7 @@</td>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- <classpathentry kind="lib" path="libs/prod/commons-io-2.6.jar" sourcepath="libs/prod/commons-io-2.6-sources.jar"/></span></span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- <classpathentry kind="lib" path="libs/prod/sis-base-18.08.0.jar" sourcepath="libs/prod/sis-base-18.08.0-sources.jar"/></span></span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ <classpathentry kind="lib" path="/usr/share/java/ecj.jar"/></span></span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ <classpathentry kind="lib" path="/usr/share/java/jaxb-core.jar"/></span></span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ <classpathentry kind="lib" path="/usr/share/java/hamcrest-core.jar"/></span></span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ <classpathentry kind="lib" path="/usr/share/java/hamcrest-integration.jar"/></span></span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ <classpathentry kind="lib" path="/usr/share/java/hamcrest-library.jar"/></span></span>
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<li id="b8b6c0d9dd3dd920daab2cc9c61c9854b5800004">
<a href="https://salsa.debian.org/med-team/libsis-jhdf5-java/commit/db984822e24beaa5ac4318c40630644ef5800a04#b8b6c0d9dd3dd920daab2cc9c61c9854b5800004"><strong>debian/patches/use_jaxb.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff">Author: Emmanuel Bourg <ebourg@apache.org></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff">Date: Wed, 19 Sep 2018 23:29:20 +0200</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff">Origin: https://lists.debian.org/debian-java/2018/09/msg00061.html</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff">Description: It isn't missing, it's hidden by default to prepare its removal in the</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"> next Java release.</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff">.</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"> > I guess this is what I need once Java 11 will be the default - but I</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"> > have no idea why the build stumbles upon this. :-(</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"> .</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"> Java 11 will soon be the default (maybe next week for the GA release?),</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"> so I recommend aiming for a long term solution.</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/source/java/ch/systemsx/cisd/hdf5/hdf5lib/HDFHelper.java</span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/source/java/ch/systemsx/cisd/hdf5/hdf5lib/HDFHelper.java</span></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -32,7 +32,7 @@ import static hdf.hdf5lib.HDF5Constants.</span></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"> import static hdf.hdf5lib.HDF5Constants.H5_INDEX_NAME;</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"> import static hdf.hdf5lib.HDF5Constants.H5_ITER_INC;</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-import com.sun.xml.internal.bind.v2.runtime.Name;</span></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+import com.sun.xml.bind.v2.runtime.Name;</span></span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="diff"> import hdf.hdf5lib.H5;</span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="diff"> import hdf.hdf5lib.HDF5Constants;</span></pre>
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