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<h3>
Andreas Tille pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/sambamba">Debian Med / sambamba</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/sambamba/commit/e731085a7c9bb45f70637b38597266d0f1e14d81">e731085a</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-09-23T05:42:56Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 0.6.8-pre3</pre>
</li>
</ul>
<h4>30 changed files:</h4>
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<li class="file-stats">
<a href="#a5cc2925ca8258af241be7e5b0381edf30266302">
.gitignore
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<a href="#7445606fbf8f3683cd42bdc54b05d7a0bc2dfc44">
.gitmodules
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<li class="file-stats">
<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">
<span class="new-file">
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.travis.yml
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<li class="file-stats">
<a href="#b2270542d41297db1ee0d12698e609ea3ec25ce7">
<span class="new-file">
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INSTALL.md
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<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
Makefile
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<a href="#544fe3dec8c6dbfa9ec37b21822a8554798b2423">
Makefile.guix
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<a href="#91cc2532f591671fe7cb5aec7b8e6c99fe96d6ec">
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Makefile.old
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<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
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<li class="file-stats">
<a href="#6f8a88f369eae9b2f3ece90d1ba6366a16f25f9c">
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RELEASE-NOTES.md
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<li class="file-stats">
<a href="#1c234ee6338e481dea3657d54dfa39f5e45ffa84">
cram/wrappers.d
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<li class="file-stats">
<a href="#7d096d615e9a5f94978a9f4dadcffa52fa06eb23">
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doc/design.org
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<li class="file-stats">
<a href="#c8182d3068e7c60f52f0823e8be0b2d7aa02a5f0">
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dub.json
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<li class="file-stats">
<a href="#da8c3529949805abe1b73685532823c3fb63b1a9">
run_tests.sh
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<li class="file-stats">
<a href="#3b3ae0b610f6ae26ed107e183c7ee027e957b1ed">
main.d
→
sambamba/main.d
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<li class="file-stats">
<a href="#b888d326ed4b8a8c518a69a5de5f0ae9bc642ef9">
sambamba/markdup.d
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<a href="#9f2da6fdabbd5ca32a18c559c9b1bd8869ec535f">
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sambamba/markdup2.d
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<a href="#f3e9a93cbfbe9312862beaf4bf5f3a05ac9f2466">
sambamba/merge.d
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<li class="file-stats">
<a href="#b5a32146659405cf1e2a8a45e9e3b9043c26a363">
sambamba/pileup.d
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<li class="file-stats">
<a href="#fafe746cd796043618d875c517f24ff0bd39c344">
sambamba/sort.d
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<li class="file-stats">
<a href="#7d9a0fa7558e07dc4b483ee3efc20abdb8441dda">
<span class="new-file">
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sambamba/subsample.d
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<li class="file-stats">
<a href="#e13f42ebca40b7f4d7c463ab536c184218a205b9">
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sambamba/validate.d
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<li class="file-stats">
<a href="#42bb90bd9eaf6d026143c6ccaef8a641b5f28589">
sambamba/view.d
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<li class="file-stats">
<a href="#5f16e8f922a2787e0eb4e007a3b52f77da637bb0">
bioconda_push.sh
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scripts/bioconda_push.sh
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<li class="file-stats">
<a href="#7d35239ef868d33f5aeefd34262dd0254fb401bd">
bioconda_yaml_gen.py
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scripts/bioconda_yaml_gen.py
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<li class="file-stats">
<a href="#491dc5fd45842aafefd0232f38fedff2e3a2ccef">
.drone.yml.template
→
scripts/drone.yml.template
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<li class="file-stats">
<a href="#89c1bdcc95921bc933547515e00b4eb5f4466164">
.dropbox.sh
→
scripts/dropbox.sh
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<li class="file-stats">
<a href="#9d2ce86f591f42c7591a0c75bf8b5ee5c3fb938d">
randomize_bases.d
→
scripts/randomize_bases.d
</a>
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<li class="file-stats">
<a href="#a2dfc645061c612393c9e78b784b01f62f7a0e42">
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+
test/benchmark/stats.org
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<li class="file-stats">
<a href="#df171672f33ee56f552e76b19a3d5f6e15bf398c">
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+
test/ex1_header.sam
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<li class="file-stats">
<a href="#ba83ffabac9f5fa23a0fece579757cfa689468b8">
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test/regression/issue_331_header.json
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<h5>The diff was not included because it is too large.</h5>
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