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<h3>
Andreas Tille pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/python-treetime">Debian Med / python-treetime</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-treetime/commit/045c51f7554c3b99e2fe07b78f97c9851b2b6be9">045c51f7</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-06-29T14:43:02Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 0.4.0</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">
.travis.yml
</a>
</li>
<li class="file-stats">
<a href="#b6024023219e26c40d54852b6f34a1c5b922d0cb">
.travis_test.sh
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
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</li>
<li class="file-stats">
<a href="#5cf0ac0f280906491c0aca59312853fab71baddf">
bin/ancestral_reconstruction.py
</a>
</li>
<li class="file-stats">
<a href="#54f2617988e4910565a07e61d2996816b6b855c6">
bin/homoplasy_scanner.py
</a>
</li>
<li class="file-stats">
<a href="#b38bc05e27c233b60ebb858a9b66291e82aee1f0">
bin/mugration.py
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</li>
<li class="file-stats">
<a href="#617a678b23c71ae5c770a95f39491256bf099493">
bin/temporal_signal.py
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</li>
<li class="file-stats">
<a href="#06b454a212fe24dc35002e7135a63778d3aee8a9">
bin/timetree_inference.py
</a>
</li>
<li class="file-stats">
<a href="#b20e835bd680a82e71f8e767a729dbc3fbe73408">
data/ebola.nwk
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</li>
<li class="file-stats">
<a href="#47a85fd6d2f4fd51ff47db5f3f036398b93da3de">
examples/ancestral_inference.py
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<li class="file-stats">
<a href="#0776e8a8b6bab01849c5c1100893fc5fd0e38515">
examples/basic_clock_tree_diagnostics.py
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<li class="file-stats">
<a href="#7bc4ba6781bc8f9d286c76153361df826224a9a4">
examples/ebola.py
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<li class="file-stats">
<a href="#deb43a1036c75e78cb38973d17a186d827c1489a">
examples/rerooting_and_timetrees.py
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<li class="file-stats">
<a href="#19359a61ae2446b51b549167b014da2fcf265768">
<span class="deleted-file">
−
requirements.txt
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</li>
<li class="file-stats">
<a href="#8e2edce0d507e1297474f25c00cae94258db38d8">
setup.py
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<li class="file-stats">
<a href="#2b6156e204dfd7dc3d5a6585293b24731c61729b">
<span class="new-file">
+
test/command_line_tests.sh
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</a>
</li>
<li class="file-stats">
<a href="#7a513663688f4096eb663d34c667233688ef8265">
test/test_treetime.py
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<li class="file-stats">
<a href="#716e6f6c16580800d13452615e2c01668aacc288">
treetime/__init__.py
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</li>
<li class="file-stats">
<a href="#797e2405beac82b907fe24f83980a349d358fd60">
treetime/aa_models.py
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</li>
<li class="file-stats">
<a href="#2f31b64169ef6c88c692cc0cdfff463cce2912e0">
treetime/branch_len_interpolator.py
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</li>
<li class="file-stats">
<a href="#d83958daf140c08b7ec128fe971dc4438e4ebc30">
treetime/clock_tree.py
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</li>
<li class="file-stats">
<a href="#26f98bca9d95bf5f13d1e05c03d8aa6a8ce146ee">
treetime/config.py
</a>
</li>
<li class="file-stats">
<a href="#9197866d72ee7afc1de2097e1da379c23f68c559">
treetime/distribution.py
</a>
</li>
<li class="file-stats">
<a href="#b990c4f689cacd4a1e8800b187c4078a5c5ed01f">
treetime/gtr.py
</a>
</li>
<li class="file-stats">
<a href="#ea6325c04095908d06ab422a724a6b1ff8dbdd51">
treetime/merger_models.py
</a>
</li>
<li class="file-stats">
<a href="#3aeeb413c53c6b3ee346e05c6bb707f4cfe6aeb3">
treetime/node_interpolator.py
</a>
</li>
<li class="file-stats">
<a href="#f1104d34c9e0a9e070b95cee96972340163867e3">
treetime/nuc_models.py
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</li>
<li class="file-stats">
<a href="#82a08428349f48dbbab4c8ccac6320f52b4c7a7b">
treetime/seq_utils.py
</a>
</li>
<li class="file-stats">
<a href="#a2e471fd9fc09543e8fd92727442680e1b76576b">
treetime/treeanc.py
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</li>
<li class="file-stats">
<a href="#0994bbb65b28bed19201420b96136d5e9f676859">
treetime/treetime.py
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</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
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