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<h3>
Alexandre Mestiashvili pushed to branch master
at <a href="https://salsa.debian.org/med-team/gmap">Debian Med / gmap</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/gmap/commit/6d10b5797d8021a56a8137b24470aa860dd87e09">6d10b579</a></strong>
<div>
<span>by Alexandre Mestiashvili</span>
<i>at 2018-09-28T09:47:41Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2018-09-27</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/gmap/commit/45b2c8d2174c5bc64e1e193b18fd2f0e9aee2503">45b2c8d2</a></strong>
<div>
<span>by Alexandre Mestiashvili</span>
<i>at 2018-09-28T09:47:52Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/2018-09-27'
Update to upstream version '2018-09-27'
with Debian dir 2f17f4d2da14da41a94978d2816291ed6b26fee1</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/gmap/commit/aebd4b79561668f370098551b6ae913529814f11">aebd4b79</a></strong>
<div>
<span>by Alexandre Mestiashvili</span>
<i>at 2018-09-28T09:51:19Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Set Architecture to any, to test the current version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/gmap/commit/d1f9ca10c5ab9300ceda336ad99067c42e5808d7">d1f9ca10</a></strong>
<div>
<span>by Alexandre Mestiashvili</span>
<i>at 2018-09-28T09:57:51Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Drop sse2.patch, applied by upstream, refresh install-data-local patch
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/gmap/commit/e0f8e00d85afb7e62a7704bf4ad316f11c8f913d">e0f8e00d</a></strong>
<div>
<span>by Alexandre Mestiashvili</span>
<i>at 2018-09-28T10:00:26Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update changelog
Gbp-Dch: Ignore
</pre>
</li>
</ul>
<h4>19 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#4faecea6d9857941b442698cdcbd38a141ff746e">
Makefile.in
</a>
</li>
<li class="file-stats">
<a href="#b33892fbddeffc3368077b4904ad0b3d562a7312">
VERSION
</a>
</li>
<li class="file-stats">
<a href="#ce57f1ad22314b8f4c927a6a24d8bceccb395d57">
acinclude.m4
</a>
</li>
<li class="file-stats">
<a href="#26384b94e569f645a8155edcc81c5c420256e9d4">
<span class="new-file">
+
config/simd-intrinsics.m4
</span>
</a>
</li>
<li class="file-stats">
<a href="#09be8533ff0a6ee5d577f971145ed449399fcda4">
configure
</a>
</li>
<li class="file-stats">
<a href="#87db583be5c13c1f7b3c958b10e03d67b6a2ca06">
configure.ac
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#cdc0f38341bcf0af07662569d0a0088b01f34fd3">
debian/patches/install-data-local
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#10be0218bc9ad64897b060c1c8eb7f9cf37850e0">
<span class="deleted-file">
−
debian/patches/sse2.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#49df23e069b78a534b14d2841918824dddc91a6b">
src/Makefile.in
</a>
</li>
<li class="file-stats">
<a href="#700d3e6dc55d9da5968f76ccfe9763e0af94028b">
src/config.h.in
</a>
</li>
<li class="file-stats">
<a href="#b5f590f1abf7ebb3af70d5c7a09638c046710c9d">
src/extension-search.c
</a>
</li>
<li class="file-stats">
<a href="#6c3899e91679b3cbaeddb2b476b75df4cd39f527">
src/genome128_consec.c
</a>
</li>
<li class="file-stats">
<a href="#49786cab443f0fbab3b5bb48f2f310040d725d74">
src/genome128_hr.c
</a>
</li>
<li class="file-stats">
<a href="#c98399a907bb515fa302e9111b148f9f0da3c8ba">
src/kmer-search.c
</a>
</li>
<li class="file-stats">
<a href="#54ceee4c74b538a43890ef0f5565fb7f4dbe7c7e">
tests/Makefile.in
</a>
</li>
<li class="file-stats">
<a href="#4b89eabbc5fbb42cef008933ba3ae489e13b62eb">
util/Makefile.in
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="4faecea6d9857941b442698cdcbd38a141ff746e">
<a href="https://salsa.debian.org/med-team/gmap/compare/61df26f32815f41ba4b0da80edd64aa49844c04a...e0f8e00d85afb7e62a7704bf4ad316f11c8f913d#4faecea6d9857941b442698cdcbd38a141ff746e"><strong>Makefile.in</strong></a>
<hr>
<table class="code white" style="font-family: monospace; font-size: 90%;" bgcolor="#fff" width="100%" cellpadding="0" cellspacing="0">
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="109" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="109" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -109,6 +109,7 @@ am__aclocal_m4_deps = $(top_srcdir)/config/libtool.m4 \</td>
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<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="109" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
109
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<td class="diff-line-num new_line" data-linenumber="109" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
109
</td>
<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC109" class="line" lang="make"> <span class="nv" style="color: teal;">$(top_srcdir)</span>/config/fopen.m4 <span class="nv" style="color: teal;">$(top_srcdir)</span>/config/asm-bsr.m4 <span class="se" style="color: #d14;">\</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="110" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
110
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<td class="diff-line-num new_line" data-linenumber="110" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
110
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC110" class="line" lang="make"> <span class="nv" style="color: teal;">$(top_srcdir)</span>/config/sse2_shift_defect.m4 <span class="se" style="color: #d14;">\</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="111" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
111
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<td class="diff-line-num new_line" data-linenumber="111" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
111
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC111" class="line" lang="make"> <span class="nv" style="color: teal;">$(top_srcdir)</span>/config/builtin-popcount.m4 <span class="se" style="color: #d14;">\</span></span>
</pre>
</td>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="112" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="112" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
112
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC112" class="line" lang="make"> <span class="nv" style="color: teal;">$(top_srcdir)</span>/config/simd-intrinsics.m4 <span class="se" style="color: #d14;">\</span></span>
</pre>
</td>
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<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="112" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
112
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<td class="diff-line-num new_line" data-linenumber="113" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
113
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC113" class="line" lang="make"> <span class="nv" style="color: teal;">$(top_srcdir)</span>/config/ax_cpuid_intel.m4 <span class="se" style="color: #d14;">\</span></span>
</pre>
</td>
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<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="113" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
113
</td>
<td class="diff-line-num new_line" data-linenumber="114" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
114
</td>
<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC114" class="line" lang="make"> <span class="nv" style="color: teal;">$(top_srcdir)</span>/config/ax_cpuid_non_intel.m4 <span class="se" style="color: #d14;">\</span></span>
</pre>
</td>
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<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="114" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
114
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<td class="diff-line-num new_line" data-linenumber="115" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
115
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC115" class="line" lang="make"> <span class="nv" style="color: teal;">$(top_srcdir)</span>/config/ax_check_compile_flag.m4 <span class="se" style="color: #d14;">\</span></span>
</pre>
</td>
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<br>
</li>
<li id="b33892fbddeffc3368077b4904ad0b3d562a7312">
<a href="https://salsa.debian.org/med-team/gmap/compare/61df26f32815f41ba4b0da80edd64aa49844c04a...e0f8e00d85afb7e62a7704bf4ad316f11c8f913d#b33892fbddeffc3368077b4904ad0b3d562a7312"><strong>VERSION</strong></a>
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1
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<td class="diff-line-num new_line old" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">2018-07-04</span></pre>
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<td class="line_content match" style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">\ No newline at end of file</td>
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<td class="diff-line-num new new_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">2018-09-27</span></pre>
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</li>
<li id="ce57f1ad22314b8f4c927a6a24d8bceccb395d57">
<a href="https://salsa.debian.org/med-team/gmap/compare/61df26f32815f41ba4b0da80edd64aa49844c04a...e0f8e00d85afb7e62a7704bf4ad316f11c8f913d#ce57f1ad22314b8f4c927a6a24d8bceccb395d57"><strong>acinclude.m4</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -23,6 +23,7 @@ m4_include([config/asm-bsr.m4])</td>
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<td class="diff-line-num old_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
23
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<td class="diff-line-num new_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
23
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext">m4_include([config/sse2_shift_defect.m4])</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="24" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
24
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<td class="diff-line-num new_line" data-linenumber="24" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"></span>
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<td class="diff-line-num old_line" data-linenumber="25" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
25
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<td class="diff-line-num new_line" data-linenumber="25" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext">m4_include([config/builtin-popcount.m4])</span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext">m4_include([config/simd-intrinsics.m4])</span>
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26
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27
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"></span>
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27
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28
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext">m4_include([config/ax_cpuid_intel.m4])</span>
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28
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29
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext">m4_include([config/ax_cpuid_non_intel.m4])</span>
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<a href="https://salsa.debian.org/med-team/gmap/compare/61df26f32815f41ba4b0da80edd64aa49844c04a...e0f8e00d85afb7e62a7704bf4ad316f11c8f913d#26384b94e569f645a8155edcc81c5c420256e9d4"><strong>config/simd-intrinsics.m4</strong></a>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext"></span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"># _mm_extract_epi64 is supposed to be covered by HAVE_SSE4_1, but fails on i386 machines</span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"></span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"></span>
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5
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">AC_DEFUN([ACX_SIMD_INTRINSICS], [</span>
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6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">AC_LANG_SAVE</span>
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7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">AC_LANG(C)</span>
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8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"></span>
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9
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext">AC_MSG_CHECKING(for _mm_extract_epi64)</span>
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10
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext">AC_COMPILE_IFELSE(</span>
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11
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> [AC_LANG_PROGRAM([[#include <smmintrin.h>]],</span>
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12
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> [[__m128i a;]],</span>
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13
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> [[_mm_extract_epi64(a,0);]])],</span>
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14
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> [AC_MSG_RESULT(yes)</span>
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15
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> AC_DEFINE([HAVE_MM_EXTRACT_EPI64],[1],[Define to 1 if _mm_extract_epi64 intrinsic is available.])],</span>
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16
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> [AC_MSG_RESULT(no)])</span>
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17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"></span>
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18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext">AC_MSG_CHECKING(for _mm_popcnt_u64)</span>
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext">AC_COMPILE_IFELSE(</span>
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20
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> [AC_LANG_PROGRAM([[#include <smmintrin.h>]],</span>
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21
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> [[int a;]],</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> [[_mm_popcnt_u64(a);]])],</span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> [AC_MSG_RESULT(yes)</span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> AC_DEFINE([HAVE_MM_POPCNT_U64],[1],[Define to 1 if _mm_popcnt_u64 intrinsic is available.])],</span>
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25
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext"> [AC_MSG_RESULT(no)])</span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"></span>
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27
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext">AC_LANG_RESTORE</span>
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28
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext">])</span>
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29
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"></span>
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30
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext"></span></pre>
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<li id="09be8533ff0a6ee5d577f971145ed449399fcda4">
<a href="https://salsa.debian.org/med-team/gmap/compare/61df26f32815f41ba4b0da80edd64aa49844c04a...e0f8e00d85afb7e62a7704bf4ad316f11c8f913d#09be8533ff0a6ee5d577f971145ed449399fcda4"><strong>configure</strong></a>
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1
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#! /bin/sh</span></span>
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2
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Guess values for system-dependent variables and create Makefiles.</span></span>
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3
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Generated by GNU Autoconf 2.69 for gmap 2018-0<span class="idiff left right">7-04</span>.</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Generated by GNU Autoconf 2.69 for gmap 2018-0<span class="idiff left right">9-27</span>.</span></span>
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4
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#</span></span>
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5
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5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Report bugs to <Thomas Wu <twu@gene.com>>.</span></span>
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6
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -590,8 +590,8 @@ MAKEFLAGS=</td>
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590
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590
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<pre style="margin: 0;"> <span id="LC590" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Identity of this package.</span></span>
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591
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591
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<pre style="margin: 0;"> <span id="LC591" class="line" lang="shell"><span class="nv" style="color: teal;">PACKAGE_NAME</span><span class="o" style="font-weight: 600;">=</span><span class="s1" style="color: #d14;">'gmap'</span></span>
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592
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592
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<pre style="margin: 0;"> <span id="LC592" class="line" lang="shell"><span class="nv" style="color: teal;">PACKAGE_TARNAME</span><span class="o" style="font-weight: 600;">=</span><span class="s1" style="color: #d14;">'gmap'</span></span>
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593
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<pre style="margin: 0;">-<span id="LC593" class="line" lang="shell"><span class="nv" style="color: teal;">PACKAGE_VERSION</span><span class="o" style="font-weight: 600;">=</span><span class="s1" style="color: #d14;">'2018-0<span class="idiff left right">7-04</span>'</span></span>
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594
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<pre style="margin: 0;">-<span id="LC594" class="line" lang="shell"><span class="nv" style="color: teal;">PACKAGE_STRING</span><span class="o" style="font-weight: 600;">=</span><span class="s1" style="color: #d14;">'gmap 2018-0<span class="idiff left right">7-04</span>'</span></span>
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593
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<pre style="margin: 0;">+<span id="LC593" class="line" lang="shell"><span class="nv" style="color: teal;">PACKAGE_VERSION</span><span class="o" style="font-weight: 600;">=</span><span class="s1" style="color: #d14;">'2018-0<span class="idiff left right">9-27</span>'</span></span>
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594
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<pre style="margin: 0;">+<span id="LC594" class="line" lang="shell"><span class="nv" style="color: teal;">PACKAGE_STRING</span><span class="o" style="font-weight: 600;">=</span><span class="s1" style="color: #d14;">'gmap 2018-0<span class="idiff left right">9-27</span>'</span></span>
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<pre style="margin: 0;"> <span id="LC595" class="line" lang="shell"><span class="nv" style="color: teal;">PACKAGE_BUGREPORT</span><span class="o" style="font-weight: 600;">=</span><span class="s1" style="color: #d14;">'Thomas Wu <twu@gene.com>'</span></span>
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596
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<pre style="margin: 0;"> <span id="LC596" class="line" lang="shell"><span class="nv" style="color: teal;">PACKAGE_URL</span><span class="o" style="font-weight: 600;">=</span><span class="s1" style="color: #d14;">''</span></span>
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597
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<pre style="margin: 0;"> <span id="LC597" class="line" lang="shell"></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1373,7 +1373,7 @@ if test "$ac_init_help" = "long"; then</td>
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<pre style="margin: 0;"> <span id="LC1373" class="line" lang="shell"> <span class="c" style="color: #998; font-style: italic;"># Omit some internal or obsolete options to make the list less imposing.</span></span>
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1374
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<pre style="margin: 0;"> <span id="LC1374" class="line" lang="shell"> <span class="c" style="color: #998; font-style: italic;"># This message is too long to be a string in the A/UX 3.1 sh.</span></span>
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<pre style="margin: 0;"> <span id="LC1375" class="line" lang="shell"> <span class="nb" style="color: #0086b3;">cat</span> <span class="o" style="font-weight: 600;"><<</span><span class="no" style="color: teal;">_ACEOF</span></span>
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<pre style="margin: 0;">-<span id="LC1376" class="line" lang="shell"><span class="sh" style="color: #d14;">\`configure' configures gmap 2018-0<span class="idiff left right">7-04</span> to adapt to many kinds of systems.</span></span>
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<pre style="margin: 0;">+<span id="LC1376" class="line" lang="shell"><span class="sh" style="color: #d14;">\`configure' configures gmap 2018-0<span class="idiff left right">9-27</span> to adapt to many kinds of systems.</span></span>
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1377
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<pre style="margin: 0;"> <span id="LC1377" class="line" lang="shell"></span>
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<pre style="margin: 0;"> <span id="LC1378" class="line" lang="shell"><span class="sh" style="color: #d14;">Usage: </span><span class="nv" style="color: teal;">$0</span><span class="sh" style="color: #d14;"> [OPTION]... [VAR=VALUE]...</span></span>
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<pre style="margin: 0;"> <span id="LC1379" class="line" lang="shell"></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1444,7 +1444,7 @@ fi</td>
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<pre style="margin: 0;"> <span id="LC1444" class="line" lang="shell"></span>
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1445
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<pre style="margin: 0;"> <span id="LC1445" class="line" lang="shell"><span class="k" style="font-weight: 600;">if </span><span class="nb" style="color: #0086b3;">test</span> <span class="nt" style="color: navy;">-n</span> <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: teal;">$ac_init_help</span><span class="s2" style="color: #d14;">"</span><span class="p">;</span> <span class="k" style="font-weight: 600;">then</span></span>
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1446
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<pre style="margin: 0;"> <span id="LC1446" class="line" lang="shell"><span class="k" style="font-weight: 600;"> case</span> <span class="nv" style="color: teal;">$ac_init_help</span> <span class="k" style="font-weight: 600;">in</span></span>
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1447
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<pre style="margin: 0;">-<span id="LC1447" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span>short <span class="p">|</span> recursive <span class="p">)</span> <span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"Configuration of gmap 2018-0<span class="idiff left right">7-04</span>:"</span><span class="p">;;</span></span>
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<pre style="margin: 0;">+<span id="LC1447" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span>short <span class="p">|</span> recursive <span class="p">)</span> <span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"Configuration of gmap 2018-0<span class="idiff left right">9-27</span>:"</span><span class="p">;;</span></span>
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1448
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<pre style="margin: 0;"> <span id="LC1448" class="line" lang="shell"> <span class="k" style="font-weight: 600;">esac</span></span>
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1449
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1449
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<pre style="margin: 0;"> <span id="LC1449" class="line" lang="shell"> <span class="nb" style="color: #0086b3;">cat</span> <span class="o" style="font-weight: 600;"><<</span><span class="sh" style="color: #d14;">\</span><span class="no" style="color: teal;">_ACEOF</span></span>
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1450
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<pre style="margin: 0;"> <span id="LC1450" class="line" lang="shell"></span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1585" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1585,7 +1585,7 @@ fi</td>
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<pre style="margin: 0;"> <span id="LC1585" class="line" lang="shell"><span class="nb" style="color: #0086b3;">test</span> <span class="nt" style="color: navy;">-n</span> <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: teal;">$ac_init_help</span><span class="s2" style="color: #d14;">"</span> <span class="o" style="font-weight: 600;">&&</span> <span class="nb" style="color: #0086b3;">exit</span> <span class="nv" style="color: teal;">$ac_status</span></span>
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<pre style="margin: 0;"> <span id="LC1586" class="line" lang="shell"><span class="k" style="font-weight: 600;">if</span> <span class="nv" style="color: teal;">$ac_init_version</span><span class="p">;</span> <span class="k" style="font-weight: 600;">then</span></span>
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1587
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<pre style="margin: 0;"> <span id="LC1587" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span><span class="nb" style="color: #0086b3;">cat</span> <span class="o" style="font-weight: 600;"><<</span><span class="sh" style="color: #d14;">\</span><span class="no" style="color: teal;">_ACEOF</span></span>
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<pre style="margin: 0;">-<span id="LC1588" class="line" lang="shell"><span class="sh" style="color: #d14;">gmap configure 2018-0<span class="idiff left right">7-04</span></span></span>
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<pre style="margin: 0;">+<span id="LC1588" class="line" lang="shell"><span class="sh" style="color: #d14;">gmap configure 2018-0<span class="idiff left right">9-27</span></span></span>
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<pre style="margin: 0;"> <span id="LC1589" class="line" lang="shell"><span class="sh" style="color: #d14;">generated by GNU Autoconf 2.69</span></span>
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<pre style="margin: 0;"> <span id="LC1590" class="line" lang="shell"></span>
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<pre style="margin: 0;"> <span id="LC1591" class="line" lang="shell"><span class="sh" style="color: #d14;">Copyright (C) 2012 Free Software Foundation, Inc.</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2191,7 +2191,7 @@ cat >config.log <<_ACEOF</td>
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2191
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<pre style="margin: 0;"> <span id="LC2191" class="line" lang="shell"><span class="sh" style="color: #d14;">This file contains any messages produced by compilers while</span></span>
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2192
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<pre style="margin: 0;"> <span id="LC2192" class="line" lang="shell"><span class="sh" style="color: #d14;">running configure, to aid debugging if configure makes a mistake.</span></span>
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2193
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<pre style="margin: 0;"> <span id="LC2193" class="line" lang="shell"></span>
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<pre style="margin: 0;">-<span id="LC2194" class="line" lang="shell"><span class="sh" style="color: #d14;">It was created by gmap </span><span class="nv" style="color: teal;">$as_me</span><span class="sh" style="color: #d14;"> 2018-0<span class="idiff left right">7-04</span>, which was</span></span>
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<pre style="margin: 0;">+<span id="LC2194" class="line" lang="shell"><span class="sh" style="color: #d14;">It was created by gmap </span><span class="nv" style="color: teal;">$as_me</span><span class="sh" style="color: #d14;"> 2018-0<span class="idiff left right">9-27</span>, which was</span></span>
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<pre style="margin: 0;"> <span id="LC2195" class="line" lang="shell"><span class="sh" style="color: #d14;">generated by GNU Autoconf 2.69. Invocation command line was</span></span>
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<pre style="margin: 0;"> <span id="LC2196" class="line" lang="shell"></span>
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<pre style="margin: 0;"> <span id="LC2197" class="line" lang="shell"><span class="sh" style="color: #d14;"> </span><span class="nv" style="color: teal;">$ $0</span><span class="sh" style="color: #d14;"> </span><span class="nv" style="color: teal;">$@</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2541,8 +2541,8 @@ ac_compiler_gnu=$ac_cv_c_compiler_gnu</td>
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<pre style="margin: 0;"> <span id="LC2541" class="line" lang="shell"></span>
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<pre style="margin: 0;"> <span id="LC2542" class="line" lang="shell"><span class="o" style="font-weight: 600;">{</span> <span class="nv" style="color: teal;">$as_echo</span> <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: teal;">$as_me</span><span class="s2" style="color: #d14;">:</span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: teal;">as_lineno</span><span class="p">-</span><span class="nv" style="color: teal;">$LINENO</span><span class="k" style="font-weight: 600;">}</span><span class="s2" style="color: #d14;">: checking package version"</span> <span class="o" style="font-weight: 600;">></span>&5</span>
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<pre style="margin: 0;"> <span id="LC2543" class="line" lang="shell"><span class="nv" style="color: teal;">$as_echo_n</span> <span class="s2" style="color: #d14;">"checking package version... "</span> <span class="o" style="font-weight: 600;">></span>&6<span class="p">;</span> <span class="o" style="font-weight: 600;">}</span></span>
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<pre style="margin: 0;">-<span id="LC2544" class="line" lang="shell"><span class="o" style="font-weight: 600;">{</span> <span class="nv" style="color: teal;">$as_echo</span> <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: teal;">$as_me</span><span class="s2" style="color: #d14;">:</span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: teal;">as_lineno</span><span class="p">-</span><span class="nv" style="color: teal;">$LINENO</span><span class="k" style="font-weight: 600;">}</span><span class="s2" style="color: #d14;">: result: 2018-0<span class="idiff left right">7-04</span>"</span> <span class="o" style="font-weight: 600;">></span>&5</span>
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<pre style="margin: 0;">-<span id="LC2545" class="line" lang="shell"><span class="nv" style="color: teal;">$as_echo</span> <span class="s2" style="color: #d14;">"2018-0<span class="idiff left right">7-04</span>"</span> <span class="o" style="font-weight: 600;">></span>&6<span class="p">;</span> <span class="o" style="font-weight: 600;">}</span></span>
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<pre style="margin: 0;">+<span id="LC2544" class="line" lang="shell"><span class="o" style="font-weight: 600;">{</span> <span class="nv" style="color: teal;">$as_echo</span> <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: teal;">$as_me</span><span class="s2" style="color: #d14;">:</span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: teal;">as_lineno</span><span class="p">-</span><span class="nv" style="color: teal;">$LINENO</span><span class="k" style="font-weight: 600;">}</span><span class="s2" style="color: #d14;">: result: 2018-0<span class="idiff left right">9-27</span>"</span> <span class="o" style="font-weight: 600;">></span>&5</span>
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<pre style="margin: 0;">+<span id="LC2545" class="line" lang="shell"><span class="nv" style="color: teal;">$as_echo</span> <span class="s2" style="color: #d14;">"2018-0<span class="idiff left right">9-27</span>"</span> <span class="o" style="font-weight: 600;">></span>&6<span class="p">;</span> <span class="o" style="font-weight: 600;">}</span></span>
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2546
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<pre style="margin: 0;"> <span id="LC2546" class="line" lang="shell"></span>
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2547
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<pre style="margin: 0;"> <span id="LC2548" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">### Read defaults</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4409,7 +4409,7 @@ fi</td>
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4409
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<pre style="margin: 0;"> <span id="LC4409" class="line" lang="shell"></span>
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<pre style="margin: 0;"> <span id="LC4410" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Define the identity of the package.</span></span>
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4411
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<pre style="margin: 0;"> <span id="LC4411" class="line" lang="shell"> <span class="nv" style="color: teal;">PACKAGE</span><span class="o" style="font-weight: 600;">=</span><span class="s1" style="color: #d14;">'gmap'</span></span>
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4412
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<pre style="margin: 0;">-<span id="LC4412" class="line" lang="shell"> <span class="nv" style="color: teal;">VERSION</span><span class="o" style="font-weight: 600;">=</span><span class="s1" style="color: #d14;">'2018-0<span class="idiff left right">7-04</span>'</span></span>
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<pre style="margin: 0;">+<span id="LC4412" class="line" lang="shell"> <span class="nv" style="color: teal;">VERSION</span><span class="o" style="font-weight: 600;">=</span><span class="s1" style="color: #d14;">'2018-0<span class="idiff left right">9-27</span>'</span></span>
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<pre style="margin: 0;"> <span id="LC4413" class="line" lang="shell"></span>
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<pre style="margin: 0;"> <span id="LC4414" class="line" lang="shell"></span>
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<pre style="margin: 0;"> <span id="LC4415" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cat</span> <span class="o" style="font-weight: 600;">>></span>confdefs.h <span class="o" style="font-weight: 600;"><<</span><span class="no" style="color: teal;">_ACEOF</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -16869,6 +16869,72 @@ ac_compiler_gnu=$ac_cv_c_compiler_gnu</td>
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<pre style="margin: 0;"> <span id="LC16869" class="line" lang="shell"></span>
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<pre style="margin: 0;"> <span id="LC16870" class="line" lang="shell"></span>
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16871
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<pre style="margin: 0;"> <span id="LC16871" class="line" lang="shell"></span>
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<pre style="margin: 0;">+<span id="LC16872" class="line" lang="shell"></span>
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<pre style="margin: 0;">+<span id="LC16873" class="line" lang="shell"><span class="nv" style="color: teal;">ac_ext</span><span class="o" style="font-weight: 600;">=</span>c</span>
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<pre style="margin: 0;">+<span id="LC16874" class="line" lang="shell"><span class="nv" style="color: teal;">ac_cpp</span><span class="o" style="font-weight: 600;">=</span><span class="s1" style="color: #d14;">'$CPP $CPPFLAGS'</span></span>
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<pre style="margin: 0;">+<span id="LC16875" class="line" lang="shell"><span class="nv" style="color: teal;">ac_compile</span><span class="o" style="font-weight: 600;">=</span><span class="s1" style="color: #d14;">'$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'</span></span>
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<pre style="margin: 0;">+<span id="LC16876" class="line" lang="shell"><span class="nv" style="color: teal;">ac_link</span><span class="o" style="font-weight: 600;">=</span><span class="s1" style="color: #d14;">'$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'</span></span>
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<pre style="margin: 0;">+<span id="LC16877" class="line" lang="shell"><span class="nv" style="color: teal;">ac_compiler_gnu</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: teal;">$ac_cv_c_compiler_gnu</span></span>
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16878
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<pre style="margin: 0;">+<span id="LC16878" class="line" lang="shell"></span>
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16879
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<pre style="margin: 0;">+<span id="LC16879" class="line" lang="shell"></span>
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<td class="diff-line-num new new_line" data-linenumber="16880" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
16880
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<pre style="margin: 0;">+<span id="LC16880" class="line" lang="shell"><span class="o" style="font-weight: 600;">{</span> <span class="nv" style="color: teal;">$as_echo</span> <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: teal;">$as_me</span><span class="s2" style="color: #d14;">:</span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: teal;">as_lineno</span><span class="p">-</span><span class="nv" style="color: teal;">$LINENO</span><span class="k" style="font-weight: 600;">}</span><span class="s2" style="color: #d14;">: checking for _mm_extract_epi64"</span> <span class="o" style="font-weight: 600;">></span>&5</span>
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16881
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<pre style="margin: 0;">+<span id="LC16881" class="line" lang="shell"><span class="nv" style="color: teal;">$as_echo_n</span> <span class="s2" style="color: #d14;">"checking for _mm_extract_epi64... "</span> <span class="o" style="font-weight: 600;">></span>&6<span class="p">;</span> <span class="o" style="font-weight: 600;">}</span></span>
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16882
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<pre style="margin: 0;">+<span id="LC16882" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cat </span>confdefs.h - <span class="o" style="font-weight: 600;"><<</span><span class="no" style="color: teal;">_ACEOF</span><span class="sh" style="color: #d14;"> >conftest.</span><span class="nv" style="color: teal;">$ac_ext</span></span>
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16883
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<pre style="margin: 0;">+<span id="LC16883" class="line" lang="shell"><span class="sh" style="color: #d14;">/* end confdefs.h. */</span></span>
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16884
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<pre style="margin: 0;">+<span id="LC16884" class="line" lang="shell"><span class="sh" style="color: #d14;">#include <smmintrin.h></span></span>
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16885
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<pre style="margin: 0;">+<span id="LC16885" class="line" lang="shell"><span class="sh" style="color: #d14;">int</span></span>
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16886
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<pre style="margin: 0;">+<span id="LC16886" class="line" lang="shell"><span class="sh" style="color: #d14;">main ()</span></span>
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16887
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<pre style="margin: 0;">+<span id="LC16887" class="line" lang="shell"><span class="sh" style="color: #d14;">{</span></span>
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16888
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<pre style="margin: 0;">+<span id="LC16888" class="line" lang="shell"><span class="sh" style="color: #d14;">__m128i a;</span></span>
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16889
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<pre style="margin: 0;">+<span id="LC16889" class="line" lang="shell"><span class="sh" style="color: #d14;"> ;</span></span>
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16890
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<pre style="margin: 0;">+<span id="LC16890" class="line" lang="shell"><span class="sh" style="color: #d14;"> return 0;</span></span>
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16891
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<pre style="margin: 0;">+<span id="LC16891" class="line" lang="shell"><span class="sh" style="color: #d14;">}</span></span>
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16892
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<pre style="margin: 0;">+<span id="LC16892" class="line" lang="shell"><span class="no" style="color: teal;">_ACEOF</span></span>
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16893
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<pre style="margin: 0;">+<span id="LC16893" class="line" lang="shell"><span class="k" style="font-weight: 600;">if </span>ac_fn_c_try_compile <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: teal;">$LINENO</span><span class="s2" style="color: #d14;">"</span><span class="p">;</span> <span class="k" style="font-weight: 600;">then</span> :</span>
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16894
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<pre style="margin: 0;">+<span id="LC16894" class="line" lang="shell"> <span class="o" style="font-weight: 600;">{</span> <span class="nv" style="color: teal;">$as_echo</span> <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: teal;">$as_me</span><span class="s2" style="color: #d14;">:</span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: teal;">as_lineno</span><span class="p">-</span><span class="nv" style="color: teal;">$LINENO</span><span class="k" style="font-weight: 600;">}</span><span class="s2" style="color: #d14;">: result: yes"</span> <span class="o" style="font-weight: 600;">></span>&5</span>
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16895
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<pre style="margin: 0;">+<span id="LC16895" class="line" lang="shell"><span class="nv" style="color: teal;">$as_echo</span> <span class="s2" style="color: #d14;">"yes"</span> <span class="o" style="font-weight: 600;">></span>&6<span class="p">;</span> <span class="o" style="font-weight: 600;">}</span></span>
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16896
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<pre style="margin: 0;">+<span id="LC16896" class="line" lang="shell"></span>
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16897
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<pre style="margin: 0;">+<span id="LC16897" class="line" lang="shell"><span class="nv" style="color: teal;">$as_echo</span> <span class="s2" style="color: #d14;">"#define HAVE_MM_EXTRACT_EPI64 1"</span> <span class="o" style="font-weight: 600;">>></span>confdefs.h</span>
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16898
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<pre style="margin: 0;">+<span id="LC16898" class="line" lang="shell"></span>
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16899
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<pre style="margin: 0;">+<span id="LC16899" class="line" lang="shell"><span class="k" style="font-weight: 600;">else</span></span>
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16900
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<pre style="margin: 0;">+<span id="LC16900" class="line" lang="shell"> <span class="o" style="font-weight: 600;">{</span> <span class="nv" style="color: teal;">$as_echo</span> <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: teal;">$as_me</span><span class="s2" style="color: #d14;">:</span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: teal;">as_lineno</span><span class="p">-</span><span class="nv" style="color: teal;">$LINENO</span><span class="k" style="font-weight: 600;">}</span><span class="s2" style="color: #d14;">: result: no"</span> <span class="o" style="font-weight: 600;">></span>&5</span>
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<td class="diff-line-num new new_line" data-linenumber="16901" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
16901
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<pre style="margin: 0;">+<span id="LC16901" class="line" lang="shell"><span class="nv" style="color: teal;">$as_echo</span> <span class="s2" style="color: #d14;">"no"</span> <span class="o" style="font-weight: 600;">></span>&6<span class="p">;</span> <span class="o" style="font-weight: 600;">}</span></span>
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<td class="diff-line-num new new_line" data-linenumber="16902" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
16902
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<pre style="margin: 0;">+<span id="LC16902" class="line" lang="shell"><span class="k" style="font-weight: 600;">fi</span></span>
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<td class="diff-line-num new new_line" data-linenumber="16903" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
16903
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<pre style="margin: 0;">+<span id="LC16903" class="line" lang="shell"><span class="nb" style="color: #0086b3;">rm</span> <span class="nt" style="color: navy;">-f</span> core conftest.err conftest.<span class="nv" style="color: teal;">$ac_objext</span> conftest.<span class="nv" style="color: teal;">$ac_ext</span></span>
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<td class="diff-line-num new new_line" data-linenumber="16904" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
16904
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<pre style="margin: 0;">+<span id="LC16904" class="line" lang="shell"></span>
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<td class="diff-line-num new new_line" data-linenumber="16905" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
16905
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<pre style="margin: 0;">+<span id="LC16905" class="line" lang="shell"><span class="o" style="font-weight: 600;">{</span> <span class="nv" style="color: teal;">$as_echo</span> <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: teal;">$as_me</span><span class="s2" style="color: #d14;">:</span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: teal;">as_lineno</span><span class="p">-</span><span class="nv" style="color: teal;">$LINENO</span><span class="k" style="font-weight: 600;">}</span><span class="s2" style="color: #d14;">: checking for _mm_popcnt_u64"</span> <span class="o" style="font-weight: 600;">></span>&5</span>
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<td class="diff-line-num new new_line" data-linenumber="16906" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
16906
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<pre style="margin: 0;">+<span id="LC16906" class="line" lang="shell"><span class="nv" style="color: teal;">$as_echo_n</span> <span class="s2" style="color: #d14;">"checking for _mm_popcnt_u64... "</span> <span class="o" style="font-weight: 600;">></span>&6<span class="p">;</span> <span class="o" style="font-weight: 600;">}</span></span>
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<td class="diff-line-num new new_line" data-linenumber="16907" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
16907
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<pre style="margin: 0;">+<span id="LC16907" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cat </span>confdefs.h - <span class="o" style="font-weight: 600;"><<</span><span class="no" style="color: teal;">_ACEOF</span><span class="sh" style="color: #d14;"> >conftest.</span><span class="nv" style="color: teal;">$ac_ext</span></span>
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16908
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<pre style="margin: 0;">+<span id="LC16908" class="line" lang="shell"><span class="sh" style="color: #d14;">/* end confdefs.h. */</span></span>
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16909
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<pre style="margin: 0;">+<span id="LC16909" class="line" lang="shell"><span class="sh" style="color: #d14;">#include <smmintrin.h></span></span>
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<td class="diff-line-num new new_line" data-linenumber="16910" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
16910
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<pre style="margin: 0;">+<span id="LC16910" class="line" lang="shell"><span class="sh" style="color: #d14;">int</span></span>
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<td class="diff-line-num new new_line" data-linenumber="16911" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
16911
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<pre style="margin: 0;">+<span id="LC16911" class="line" lang="shell"><span class="sh" style="color: #d14;">main ()</span></span>
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16912
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<pre style="margin: 0;">+<span id="LC16912" class="line" lang="shell"><span class="sh" style="color: #d14;">{</span></span>
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16913
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<pre style="margin: 0;">+<span id="LC16913" class="line" lang="shell"><span class="sh" style="color: #d14;">int a;</span></span>
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16914
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<pre style="margin: 0;">+<span id="LC16914" class="line" lang="shell"><span class="sh" style="color: #d14;"> ;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="16915" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
16915
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<pre style="margin: 0;">+<span id="LC16915" class="line" lang="shell"><span class="sh" style="color: #d14;"> return 0;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="16916" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
16916
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<pre style="margin: 0;">+<span id="LC16916" class="line" lang="shell"><span class="sh" style="color: #d14;">}</span></span>
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<td class="diff-line-num new new_line" data-linenumber="16917" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
16917
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<pre style="margin: 0;">+<span id="LC16917" class="line" lang="shell"><span class="no" style="color: teal;">_ACEOF</span></span>
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<td class="diff-line-num new new_line" data-linenumber="16918" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
16918
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<pre style="margin: 0;">+<span id="LC16918" class="line" lang="shell"><span class="k" style="font-weight: 600;">if </span>ac_fn_c_try_compile <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: teal;">$LINENO</span><span class="s2" style="color: #d14;">"</span><span class="p">;</span> <span class="k" style="font-weight: 600;">then</span> :</span>
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<td class="diff-line-num new new_line" data-linenumber="16919" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
16919
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<pre style="margin: 0;">+<span id="LC16919" class="line" lang="shell"> <span class="o" style="font-weight: 600;">{</span> <span class="nv" style="color: teal;">$as_echo</span> <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: teal;">$as_me</span><span class="s2" style="color: #d14;">:</span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: teal;">as_lineno</span><span class="p">-</span><span class="nv" style="color: teal;">$LINENO</span><span class="k" style="font-weight: 600;">}</span><span class="s2" style="color: #d14;">: result: yes"</span> <span class="o" style="font-weight: 600;">></span>&5</span>
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16920
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<pre style="margin: 0;">+<span id="LC16920" class="line" lang="shell"><span class="nv" style="color: teal;">$as_echo</span> <span class="s2" style="color: #d14;">"yes"</span> <span class="o" style="font-weight: 600;">></span>&6<span class="p">;</span> <span class="o" style="font-weight: 600;">}</span></span>
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16921
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<pre style="margin: 0;">+<span id="LC16921" class="line" lang="shell"></span>
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16922
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<pre style="margin: 0;">+<span id="LC16922" class="line" lang="shell"><span class="nv" style="color: teal;">$as_echo</span> <span class="s2" style="color: #d14;">"#define HAVE_MM_POPCNT_U64 1"</span> <span class="o" style="font-weight: 600;">>></span>confdefs.h</span>
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16923
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<pre style="margin: 0;">+<span id="LC16923" class="line" lang="shell"></span>
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<td class="diff-line-num new new_line" data-linenumber="16924" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
16924
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<pre style="margin: 0;">+<span id="LC16924" class="line" lang="shell"><span class="k" style="font-weight: 600;">else</span></span>
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<td class="diff-line-num new new_line" data-linenumber="16925" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
16925
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<pre style="margin: 0;">+<span id="LC16925" class="line" lang="shell"> <span class="o" style="font-weight: 600;">{</span> <span class="nv" style="color: teal;">$as_echo</span> <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: teal;">$as_me</span><span class="s2" style="color: #d14;">:</span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: teal;">as_lineno</span><span class="p">-</span><span class="nv" style="color: teal;">$LINENO</span><span class="k" style="font-weight: 600;">}</span><span class="s2" style="color: #d14;">: result: no"</span> <span class="o" style="font-weight: 600;">></span>&5</span>
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<td class="diff-line-num new new_line" data-linenumber="16926" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
16926
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<pre style="margin: 0;">+<span id="LC16926" class="line" lang="shell"><span class="nv" style="color: teal;">$as_echo</span> <span class="s2" style="color: #d14;">"no"</span> <span class="o" style="font-weight: 600;">></span>&6<span class="p">;</span> <span class="o" style="font-weight: 600;">}</span></span>
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<td class="diff-line-num new new_line" data-linenumber="16927" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
16927
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<pre style="margin: 0;">+<span id="LC16927" class="line" lang="shell"><span class="k" style="font-weight: 600;">fi</span></span>
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<td class="diff-line-num new new_line" data-linenumber="16928" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
16928
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<pre style="margin: 0;">+<span id="LC16928" class="line" lang="shell"><span class="nb" style="color: #0086b3;">rm</span> <span class="nt" style="color: navy;">-f</span> core conftest.err conftest.<span class="nv" style="color: teal;">$ac_objext</span> conftest.<span class="nv" style="color: teal;">$ac_ext</span></span>
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16929
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<pre style="margin: 0;">+<span id="LC16929" class="line" lang="shell"></span>
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16930
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<pre style="margin: 0;">+<span id="LC16930" class="line" lang="shell"><span class="nv" style="color: teal;">ac_ext</span><span class="o" style="font-weight: 600;">=</span>c</span>
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16931
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<pre style="margin: 0;">+<span id="LC16931" class="line" lang="shell"><span class="nv" style="color: teal;">ac_cpp</span><span class="o" style="font-weight: 600;">=</span><span class="s1" style="color: #d14;">'$CPP $CPPFLAGS'</span></span>
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16932
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<pre style="margin: 0;">+<span id="LC16932" class="line" lang="shell"><span class="nv" style="color: teal;">ac_compile</span><span class="o" style="font-weight: 600;">=</span><span class="s1" style="color: #d14;">'$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'</span></span>
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16933
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<pre style="margin: 0;">+<span id="LC16933" class="line" lang="shell"><span class="nv" style="color: teal;">ac_link</span><span class="o" style="font-weight: 600;">=</span><span class="s1" style="color: #d14;">'$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'</span></span>
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16934
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<pre style="margin: 0;">+<span id="LC16934" class="line" lang="shell"><span class="nv" style="color: teal;">ac_compiler_gnu</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: teal;">$ac_cv_c_compiler_gnu</span></span>
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16935
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<pre style="margin: 0;">+<span id="LC16935" class="line" lang="shell"></span>
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16936
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<pre style="margin: 0;">+<span id="LC16936" class="line" lang="shell"></span>
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16937
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<pre style="margin: 0;">+<span id="LC16937" class="line" lang="shell"></span>
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16872
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16938
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<pre style="margin: 0;"> <span id="LC16938" class="line" lang="shell"><span class="o" style="font-weight: 600;">{</span> <span class="nv" style="color: teal;">$as_echo</span> <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: teal;">$as_me</span><span class="s2" style="color: #d14;">:</span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: teal;">as_lineno</span><span class="p">-</span><span class="nv" style="color: teal;">$LINENO</span><span class="k" style="font-weight: 600;">}</span><span class="s2" style="color: #d14;">: checking for whether simd is enabled"</span> <span class="o" style="font-weight: 600;">></span>&5</span>
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16873
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16939
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<pre style="margin: 0;"> <span id="LC16939" class="line" lang="shell"><span class="nv" style="color: teal;">$as_echo_n</span> <span class="s2" style="color: #d14;">"checking for whether simd is enabled... "</span> <span class="o" style="font-weight: 600;">></span>&6<span class="p">;</span> <span class="o" style="font-weight: 600;">}</span></span>
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16874
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16940
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<pre style="margin: 0;"> <span id="LC16940" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Check whether --enable-simd was given.</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="19871" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="19937" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -19871,7 +19937,7 @@ cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1</td>
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19871
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19937
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<pre style="margin: 0;"> <span id="LC19937" class="line" lang="shell"><span class="sh" style="color: #d14;"># report actual input values of CONFIG_FILES etc. instead of their</span></span>
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19872
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19938
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<pre style="margin: 0;"> <span id="LC19938" class="line" lang="shell"><span class="sh" style="color: #d14;"># values after options handling.</span></span>
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19873
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19939
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<pre style="margin: 0;"> <span id="LC19939" class="line" lang="shell"><span class="sh" style="color: #d14;">ac_log="</span></span>
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19874
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<pre style="margin: 0;">-<span id="LC19874" class="line" lang="shell"><span class="sh" style="color: #d14;">This file was extended by gmap </span><span class="nv" style="color: teal;">$as_me</span><span class="sh" style="color: #d14;"> 2018-0<span class="idiff left right">7-04</span>, which was</span></span>
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19940
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<pre style="margin: 0;">+<span id="LC19940" class="line" lang="shell"><span class="sh" style="color: #d14;">This file was extended by gmap </span><span class="nv" style="color: teal;">$as_me</span><span class="sh" style="color: #d14;"> 2018-0<span class="idiff left right">9-27</span>, which was</span></span>
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19875
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19941
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<pre style="margin: 0;"> <span id="LC19941" class="line" lang="shell"><span class="sh" style="color: #d14;">generated by GNU Autoconf 2.69. Invocation command line was</span></span>
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19876
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19942
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<pre style="margin: 0;"> <span id="LC19942" class="line" lang="shell"></span>
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19877
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19943
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<pre style="margin: 0;"> <span id="LC19943" class="line" lang="shell"><span class="sh" style="color: #d14;"> CONFIG_FILES = </span><span class="nv" style="color: teal;">$CONFIG_FILES</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="19937" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="20003" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -19937,7 +20003,7 @@ _ACEOF</td>
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19937
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20003
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<pre style="margin: 0;"> <span id="LC20003" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cat</span> <span class="o" style="font-weight: 600;">>></span><span class="nv" style="color: teal;">$CONFIG_STATUS</span> <span class="o" style="font-weight: 600;"><<</span><span class="no" style="color: teal;">_ACEOF</span><span class="sh" style="color: #d14;"> || ac_write_fail=1</span></span>
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19938
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20004
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<pre style="margin: 0;"> <span id="LC20004" class="line" lang="shell"><span class="sh" style="color: #d14;">ac_cs_config="`</span><span class="nv" style="color: teal;">$as_echo</span><span class="sh" style="color: #d14;"> "</span><span class="nv" style="color: teal;">$ac_configure_args</span><span class="sh" style="color: #d14;">" | sed 's/^ //; s/[\\""\`\</span><span class="nv" style="color: teal;">$]</span><span class="sh" style="color: #d14;">/\\\\&/g'`"</span></span>
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19939
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20005
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<pre style="margin: 0;"> <span id="LC20005" class="line" lang="shell"><span class="sh" style="color: #d14;">ac_cs_version="\\</span></span>
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19940
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<pre style="margin: 0;">-<span id="LC19940" class="line" lang="shell"><span class="sh" style="color: #d14;">gmap config.status 2018-0<span class="idiff left right">7-04</span></span></span>
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20006
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<pre style="margin: 0;">+<span id="LC20006" class="line" lang="shell"><span class="sh" style="color: #d14;">gmap config.status 2018-0<span class="idiff left right">9-27</span></span></span>
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19941
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20007
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<pre style="margin: 0;"> <span id="LC20007" class="line" lang="shell"><span class="sh" style="color: #d14;">configured by </span><span class="nv" style="color: teal;">$0</span><span class="sh" style="color: #d14;">, generated by GNU Autoconf 2.69,</span></span>
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19942
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20008
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<pre style="margin: 0;"> <span id="LC20008" class="line" lang="shell"><span class="sh" style="color: #d14;"> with options \\"\</span><span class="nv" style="color: teal;">$ac_cs_config</span><span class="sh" style="color: #d14;">\\"</span></span>
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19943
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20009
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<pre style="margin: 0;"> <span id="LC20009" class="line" lang="shell"></span>
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<a href="https://salsa.debian.org/med-team/gmap/compare/61df26f32815f41ba4b0da80edd64aa49844c04a...e0f8e00d85afb7e62a7704bf4ad316f11c8f913d#87db583be5c13c1f7b3c958b10e03d67b6a2ca06"><strong>configure.ac</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -358,6 +358,7 @@ ACX_ASM_BSR</td>
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358
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358
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<pre style="margin: 0;"> <span id="LC358" class="line" lang="plaintext"></span>
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359
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359
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<pre style="margin: 0;"> <span id="LC359" class="line" lang="plaintext"></span>
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360
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360
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<pre style="margin: 0;"> <span id="LC360" class="line" lang="plaintext">ACX_SSE2_SHIFT_DEFECT</span>
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361
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<pre style="margin: 0;">+<span id="LC361" class="line" lang="plaintext">ACX_SIMD_INTRINSICS</span>
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361
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362
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<pre style="margin: 0;"> <span id="LC362" class="line" lang="plaintext"></span>
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362
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363
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<pre style="margin: 0;"> <span id="LC363" class="line" lang="plaintext">AC_MSG_CHECKING(for whether simd is enabled)</span>
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363
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364
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<pre style="margin: 0;"> <span id="LC364" class="line" lang="plaintext">AC_ARG_ENABLE([simd],</span>
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<a href="https://salsa.debian.org/med-team/gmap/compare/61df26f32815f41ba4b0da80edd64aa49844c04a...e0f8e00d85afb7e62a7704bf4ad316f11c8f913d#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">gmap (2018-09-27-1) experimental; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * New upstream version 2018-09-27</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * Set Architecture to any, we want to test if it builds on other archs</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> * Drop sse2.patch, applied by upstream, refresh install-data-local patch</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> -- Alexandre Mestiashvili <mestia@debian.org> Fri, 28 Sep 2018 09:58:12 +0000</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">gmap (2018-07-04-4) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> [ Alexandre Mestiashvili ]</span>
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<a href="https://salsa.debian.org/med-team/gmap/compare/61df26f32815f41ba4b0da80edd64aa49844c04a...e0f8e00d85afb7e62a7704bf4ad316f11c8f913d#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -17,7 +17,7 @@ Vcs-Git: https://salsa.debian.org/med-team/gmap.git</td>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext">Homepage: http://research-pub.gene.com/gmap</span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext">Package: gmap</span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext">Architecture: any<span class="idiff left right">-amd64 any-i386</span></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext">Architecture: any</span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext">Depends: ${misc:Depends},</span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> ${perl:Depends},</span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> ${shlibs:Depends}</span>
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<a href="https://salsa.debian.org/med-team/gmap/compare/61df26f32815f41ba4b0da80edd64aa49844c04a...e0f8e00d85afb7e62a7704bf4ad316f11c8f913d#cdc0f38341bcf0af07662569d0a0088b01f34fd3"><strong>debian/patches/install-data-local</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2,7 +2,7 @@ Description: Install data local</td>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="diff"></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- gmap.orig/Makefile.in</span></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ gmap/Makefile.in</span></span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -84<span class="idiff left right">7,7 +847</span>,7 @@</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -84<span class="idiff left right">8,7 +848</span>,7 @@</span></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="diff"> install-data-local:</span>
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<a href="https://salsa.debian.org/med-team/gmap/compare/61df26f32815f41ba4b0da80edd64aa49844c04a...e0f8e00d85afb7e62a7704bf4ad316f11c8f913d#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">sse2.patch</span>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">only-do-cpuid-on-amd64-i386.patch</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">install-data-local</span></pre>
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<a href="https://salsa.debian.org/med-team/gmap/compare/61df26f32815f41ba4b0da80edd64aa49844c04a...e0f8e00d85afb7e62a7704bf4ad316f11c8f913d#10be0218bc9ad64897b060c1c8eb7f9cf37850e0"><strong>debian/patches/sse2.patch</strong>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="diff">Subject: Apply upstream patch fixing #902820</span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="diff"> FTBFS on stretch/amd64 if CPU has SSE2 and nothing more</span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="diff">From: Thomas Wu <wu.thomas@gene.com></span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="diff">Forwarded: Yes</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- gmap.orig/src/extension-search.c</span></span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ gmap/src/extension-search.c</span></span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -340,13 +340,6 @@</span></span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="diff"> #endif</span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-static void</span></span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-print_vector_dec (__m128i x) {</span></span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- printf("%d %d %d %d\n",</span></span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- _mm_extract_epi32(x,0),_mm_extract_epi32(x,1),_mm_extract_epi32(x,2),_mm_extract_epi32(x,3));</span></span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- return;</span></span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-}</span></span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-</span></span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="diff"> #if !defined(HAVE_SSE4_2)</span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="diff"> #define count_leading_zeroes_32(diff) ((diff >> 16) ? clz_table[diff >> 16] : 16 + clz_table[diff])</span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- gmap.orig/src/kmer-search.c</span></span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ gmap/src/kmer-search.c</span></span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -215,7 +215,8 @@</span></span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="diff"> /* Algorithm 2: Stage3end_complete_path_run_gmap: complete_path -> hits */</span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#ifdef HAVE_SSE2</span></span>
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#ifdef DEBUG8</span></span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#ifdef HAVE_SSE4_1</span></span>
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="diff"> static void</span>
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="diff"> print_vector_dec (__m128i x) {</span>
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="diff"> printf("%d %d %d %d\n",</span>
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -223,6 +224,7 @@</span></span>
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<pre style="margin: 0;">-<span id="LC34" class="line" lang="diff"> return;</span>
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="diff"> }</span>
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<pre style="margin: 0;">-<span id="LC36" class="line" lang="diff"> #endif</span>
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<pre style="margin: 0;">-<span id="LC37" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#endif</span></span>
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<pre style="margin: 0;">-<span id="LC38" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC40" class="line" lang="diff"> #if !defined(HAVE_SSE4_2)</span></pre>
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<li id="49df23e069b78a534b14d2841918824dddc91a6b">
<a href="https://salsa.debian.org/med-team/gmap/compare/61df26f32815f41ba4b0da80edd64aa49844c04a...e0f8e00d85afb7e62a7704bf4ad316f11c8f913d#49df23e069b78a534b14d2841918824dddc91a6b"><strong>src/Makefile.in</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="137" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="137" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -137,6 +137,7 @@ am__aclocal_m4_deps = $(top_srcdir)/config/libtool.m4 \</td>
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137
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137
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<pre style="margin: 0;"> <span id="LC137" class="line" lang="make"> <span class="nv" style="color: teal;">$(top_srcdir)</span>/config/fopen.m4 <span class="nv" style="color: teal;">$(top_srcdir)</span>/config/asm-bsr.m4 <span class="se" style="color: #d14;">\</span></span>
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138
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138
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<pre style="margin: 0;"> <span id="LC138" class="line" lang="make"> <span class="nv" style="color: teal;">$(top_srcdir)</span>/config/sse2_shift_defect.m4 <span class="se" style="color: #d14;">\</span></span>
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139
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139
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<pre style="margin: 0;"> <span id="LC139" class="line" lang="make"> <span class="nv" style="color: teal;">$(top_srcdir)</span>/config/builtin-popcount.m4 <span class="se" style="color: #d14;">\</span></span>
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140
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<pre style="margin: 0;">+<span id="LC140" class="line" lang="make"> <span class="nv" style="color: teal;">$(top_srcdir)</span>/config/simd-intrinsics.m4 <span class="se" style="color: #d14;">\</span></span>
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140
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141
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<pre style="margin: 0;"> <span id="LC141" class="line" lang="make"> <span class="nv" style="color: teal;">$(top_srcdir)</span>/config/ax_cpuid_intel.m4 <span class="se" style="color: #d14;">\</span></span>
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141
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142
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<pre style="margin: 0;"> <span id="LC142" class="line" lang="make"> <span class="nv" style="color: teal;">$(top_srcdir)</span>/config/ax_cpuid_non_intel.m4 <span class="se" style="color: #d14;">\</span></span>
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142
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143
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<pre style="margin: 0;"> <span id="LC143" class="line" lang="make"> <span class="nv" style="color: teal;">$(top_srcdir)</span>/config/ax_check_compile_flag.m4 <span class="se" style="color: #d14;">\</span></span>
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<li id="700d3e6dc55d9da5968f76ccfe9763e0af94028b">
<a href="https://salsa.debian.org/med-team/gmap/compare/61df26f32815f41ba4b0da80edd64aa49844c04a...e0f8e00d85afb7e62a7704bf4ad316f11c8f913d#700d3e6dc55d9da5968f76ccfe9763e0af94028b"><strong>src/config.h.in</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="125" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -125,10 +125,16 @@</td>
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125
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<pre style="margin: 0;"> <span id="LC125" class="line" lang="plaintext">/* Define to 1 if MAP_VARIABLE available for mmap. */</span>
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126
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<pre style="margin: 0;"> <span id="LC126" class="line" lang="plaintext">#undef HAVE_MMAP_MAP_VARIABLE</span>
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127
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<pre style="margin: 0;"> <span id="LC127" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC128" class="line" lang="plaintext">/* Define to 1 if _mm_extract_epi64 intrinsic is available. */</span>
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129
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<pre style="margin: 0;">+<span id="LC129" class="line" lang="plaintext">#undef HAVE_MM_EXTRACT_EPI64</span>
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130
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<pre style="margin: 0;">+<span id="LC130" class="line" lang="plaintext"></span>
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128
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<pre style="margin: 0;"> <span id="LC131" class="line" lang="plaintext">/* Define to 1 if you support Intel intrinsic _mm_popcnt_u32/64 instructions</span>
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129
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<pre style="margin: 0;"> <span id="LC132" class="line" lang="plaintext"> */</span>
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130
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<pre style="margin: 0;"> <span id="LC133" class="line" lang="plaintext">#undef HAVE_MM_POPCNT</span>
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131
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134
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<pre style="margin: 0;"> <span id="LC134" class="line" lang="plaintext"></span>
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135
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<pre style="margin: 0;">+<span id="LC135" class="line" lang="plaintext">/* Define to 1 if _mm_popcnt_u64 intrinsic is available. */</span>
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136
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<pre style="margin: 0;">+<span id="LC136" class="line" lang="plaintext">#undef HAVE_MM_POPCNT_U64</span>
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137
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<pre style="margin: 0;">+<span id="LC137" class="line" lang="plaintext"></span>
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132
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138
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<pre style="margin: 0;"> <span id="LC138" class="line" lang="plaintext">/* Define to 1 if you have the `munmap' function. */</span>
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133
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139
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<pre style="margin: 0;"> <span id="LC139" class="line" lang="plaintext">#undef HAVE_MUNMAP</span>
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134
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140
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<pre style="margin: 0;"> <span id="LC140" class="line" lang="plaintext"></span>
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<a href="https://salsa.debian.org/med-team/gmap/compare/61df26f32815f41ba4b0da80edd64aa49844c04a...e0f8e00d85afb7e62a7704bf4ad316f11c8f913d#b5f590f1abf7ebb3af70d5c7a09638c046710c9d"><strong>src/extension-search.c</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -340,13 +340,6 @@ oligo_nt (UINT4 oligo, int oligosize) {</td>
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<pre style="margin: 0;"> <span id="LC340" class="line" lang="c"></span>
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<pre style="margin: 0;"> <span id="LC341" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<pre style="margin: 0;"> <span id="LC342" class="line" lang="c"></span>
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<pre style="margin: 0;">-<span id="LC343" class="line" lang="c"><span class="k" style="font-weight: 600;">static</span> <span class="kt" style="color: #458; font-weight: 600;">void</span></span>
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<pre style="margin: 0;">-<span id="LC344" class="line" lang="c"><span class="nf" style="color: #900; font-weight: 600;">print_vector_dec</span> <span class="p">(</span><span class="n" style="color: #333;">__m128i</span> <span class="n" style="color: #333;">x</span><span class="p">)</span> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC345" class="line" lang="c"> <span class="n" style="color: #333;">printf</span><span class="p">(</span><span class="s" style="color: #d14;">"%d %d %d %d</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC346" class="line" lang="c"> <span class="n" style="color: #333;">_mm_extract_epi32</span><span class="p">(</span><span class="n" style="color: #333;">x</span><span class="p">,</span><span class="mi" style="color: #099;">0</span><span class="p">),</span><span class="n" style="color: #333;">_mm_extract_epi32</span><span class="p">(</span><span class="n" style="color: #333;">x</span><span class="p">,</span><span class="mi" style="color: #099;">1</span><span class="p">),</span><span class="n" style="color: #333;">_mm_extract_epi32</span><span class="p">(</span><span class="n" style="color: #333;">x</span><span class="p">,</span><span class="mi" style="color: #099;">2</span><span class="p">),</span><span class="n" style="color: #333;">_mm_extract_epi32</span><span class="p">(</span><span class="n" style="color: #333;">x</span><span class="p">,</span><span class="mi" style="color: #099;">3</span><span class="p">));</span></span>
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<pre style="margin: 0;">-<span id="LC347" class="line" lang="c"> <span class="k" style="font-weight: 600;">return</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC348" class="line" lang="c"><span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC349" class="line" lang="c"></span>
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<pre style="margin: 0;"> <span id="LC343" class="line" lang="c"></span>
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<pre style="margin: 0;"> <span id="LC344" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#if !defined(HAVE_SSE4_2)</span></span>
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<pre style="margin: 0;"> <span id="LC345" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#define count_leading_zeroes_32(diff) ((diff >> 16) ? clz_table[diff >> 16] : 16 + clz_table[diff])</span></span>
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<a href="https://salsa.debian.org/med-team/gmap/compare/61df26f32815f41ba4b0da80edd64aa49844c04a...e0f8e00d85afb7e62a7704bf4ad316f11c8f913d#6c3899e91679b3cbaeddb2b476b75df4cd39f527"><strong>src/genome128_consec.c</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3092,7 +3092,7 @@ set_end_128 (__m128i _diff, int enddiscard) {</td>
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<pre style="margin: 0;"> <span id="LC3092" class="line" lang="c"><span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC3093" class="line" lang="c"></span>
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<pre style="margin: 0;"> <span id="LC3094" class="line" lang="c"></span>
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<pre style="margin: 0;">-<span id="LC3095" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#if !defined(HAVE_SSE4_2)</span></span>
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<pre style="margin: 0;">+<span id="LC3095" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#if !defined(HAVE_SSE4_2)<span class="idiff left right"> || !defined(HAVE_MM_EXTRACT_EPI64)</span></span></span>
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<pre style="margin: 0;"> <span id="LC3096" class="line" lang="c"></span>
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<pre style="margin: 0;"> <span id="LC3097" class="line" lang="c"><span class="c" style="color: #998; font-style: italic;">#if 0</span></span>
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<pre style="margin: 0;"> <span id="LC3098" class="line" lang="c"><span class="c" style="color: #998; font-style: italic;">/* Naive method for pre-SSE4.2. Requires four popcount operations. */</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3135,7 +3135,7 @@ popcount_ones_128 (__m128i _diff) {</td>
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3135
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3135
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<pre style="margin: 0;"> <span id="LC3135" class="line" lang="c"></span>
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3136
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3136
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<pre style="margin: 0;"> <span id="LC3136" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#elif defined(HAVE_POPCNT)</span></span>
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3137
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3137
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<pre style="margin: 0;"> <span id="LC3137" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#define popcount_ones_128(_diff) (_popcnt64(_mm_extract_epi64(_diff,0)) + _popcnt64(_mm_extract_epi64(_diff,1)))</span></span>
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3138
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<pre style="margin: 0;">-<span id="LC3138" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#elif defined(HAVE_MM_POPCNT)</span></span>
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<pre style="margin: 0;">+<span id="LC3138" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#elif defined(HAVE_MM_POPCNT)<span class="idiff left right"> && defined(HAVE_MM_POPCNT_U64)</span></span></span>
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3139
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3139
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<pre style="margin: 0;"> <span id="LC3139" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#define popcount_ones_128(_diff) (_mm_popcnt_u64(_mm_extract_epi64(_diff,0)) + _mm_popcnt_u64(_mm_extract_epi64(_diff,1)))</span></span>
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3140
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3140
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<pre style="margin: 0;"> <span id="LC3140" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#else</span></span>
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3141
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3141
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<pre style="margin: 0;"> <span id="LC3141" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#define popcount_ones_128(_diff) (__builtin_popcountll(_mm_extract_epi64(_diff,0)) + __builtin_popcountll(_mm_extract_epi64(_diff,1)))</span></span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="3147" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3147,7 +3147,7 @@ count_leading_zeroes_128 (__m128i _diff) {</td>
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3147
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3147
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<pre style="margin: 0;"> <span id="LC3147" class="line" lang="c"> <span class="n" style="color: #333;">debug4</span><span class="p">(</span><span class="n" style="color: #333;">printf</span><span class="p">(</span><span class="s" style="color: #d14;">"Entered count_leading_zeroes_128 with "</span><span class="p">));</span></span>
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3148
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3148
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<pre style="margin: 0;"> <span id="LC3148" class="line" lang="c"> <span class="n" style="color: #333;">debug4</span><span class="p">(</span><span class="n" style="color: #333;">print_vector_hex</span><span class="p">(</span><span class="n" style="color: #333;">_diff</span><span class="p">));</span></span>
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3149
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3149
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<pre style="margin: 0;"> <span id="LC3149" class="line" lang="c"></span>
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3150
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<pre style="margin: 0;">-<span id="LC3150" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#if defined(HAVE_SSE4_2) && defined(HAVE_LZCNT)</span></span>
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<pre style="margin: 0;">+<span id="LC3150" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#if defined(HAVE_SSE4_2) && defined(HAVE_LZCNT)<span class="idiff left right"> && defined(HAVE_MM_EXTRACT_EPI64)</span></span></span>
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3151
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<pre style="margin: 0;"> <span id="LC3151" class="line" lang="c"> <span class="n" style="color: #333;">UINT8</span> <span class="n" style="color: #333;">x</span><span class="p">;</span></span>
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3152
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3152
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<pre style="margin: 0;"> <span id="LC3152" class="line" lang="c"></span>
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3153
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<pre style="margin: 0;"> <span id="LC3153" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">((</span><span class="n" style="color: #333;">x</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_extract_epi64</span><span class="p">(</span><span class="n" style="color: #333;">_diff</span><span class="p">,</span><span class="mi" style="color: #099;">1</span><span class="p">))</span> <span class="o" style="font-weight: 600;">!=</span> <span class="mi" style="color: #099;">0</span><span class="p">)</span> <span class="p">{</span></span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="3156" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3156,7 +3156,7 @@ count_leading_zeroes_128 (__m128i _diff) {</td>
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3156
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<pre style="margin: 0;"> <span id="LC3156" class="line" lang="c"> <span class="k" style="font-weight: 600;">return</span> <span class="mi" style="color: #099;">64</span> <span class="o" style="font-weight: 600;">+</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">int</span><span class="p">)</span> <span class="n" style="color: #333;">_lzcnt_u64</span><span class="p">(</span><span class="n" style="color: #333;">_mm_extract_epi64</span><span class="p">(</span><span class="n" style="color: #333;">_diff</span><span class="p">,</span><span class="mi" style="color: #099;">0</span><span class="p">));</span></span>
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3157
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<pre style="margin: 0;"> <span id="LC3157" class="line" lang="c"> <span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC3158" class="line" lang="c"></span>
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<pre style="margin: 0;">-<span id="LC3159" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#elif defined(HAVE_SSE4_1)</span></span>
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3159
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<pre style="margin: 0;">+<span id="LC3159" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#elif defined(HAVE_SSE4_1)<span class="idiff left right"> && defined(HAVE_MM_EXTRACT_EPI64)</span></span></span>
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3160
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3160
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<pre style="margin: 0;"> <span id="LC3160" class="line" lang="c"> <span class="n" style="color: #333;">UINT8</span> <span class="n" style="color: #333;">x</span><span class="p">;</span></span>
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3161
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3161
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<pre style="margin: 0;"> <span id="LC3161" class="line" lang="c"></span>
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3162
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3162
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<pre style="margin: 0;"> <span id="LC3162" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">((</span><span class="n" style="color: #333;">x</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_extract_epi64</span><span class="p">(</span><span class="n" style="color: #333;">_diff</span><span class="p">,</span><span class="mi" style="color: #099;">1</span><span class="p">))</span> <span class="o" style="font-weight: 600;">!=</span> <span class="mi" style="color: #099;">0</span><span class="p">)</span> <span class="p">{</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="3190" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="3190" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3190,7 +3190,7 @@ count_trailing_zeroes_128 (__m128i _diff) {</td>
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3190
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3190
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<pre style="margin: 0;"> <span id="LC3190" class="line" lang="c"> <span class="n" style="color: #333;">debug4</span><span class="p">(</span><span class="n" style="color: #333;">printf</span><span class="p">(</span><span class="s" style="color: #d14;">"Entered count_trailing_zeroes_128 with "</span><span class="p">));</span></span>
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3191
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3191
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<pre style="margin: 0;"> <span id="LC3191" class="line" lang="c"> <span class="n" style="color: #333;">debug4</span><span class="p">(</span><span class="n" style="color: #333;">print_vector_hex</span><span class="p">(</span><span class="n" style="color: #333;">_diff</span><span class="p">));</span></span>
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3192
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3192
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<pre style="margin: 0;"> <span id="LC3192" class="line" lang="c"></span>
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3193
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<pre style="margin: 0;">-<span id="LC3193" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#if defined(HAVE_SSE4_2) && defined(HAVE_TZCNT)</span></span>
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3193
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<pre style="margin: 0;">+<span id="LC3193" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#if defined(HAVE_SSE4_2) && defined(HAVE_TZCNT)<span class="idiff left right"> && defined(HAVE_MM_EXTRACT_EPI64)</span></span></span>
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3194
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3194
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<pre style="margin: 0;"> <span id="LC3194" class="line" lang="c"> <span class="n" style="color: #333;">UINT8</span> <span class="n" style="color: #333;">x</span><span class="p">;</span></span>
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3195
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3195
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<pre style="margin: 0;"> <span id="LC3195" class="line" lang="c"></span>
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3196
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3196
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<pre style="margin: 0;"> <span id="LC3196" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">((</span><span class="n" style="color: #333;">x</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_extract_epi64</span><span class="p">(</span><span class="n" style="color: #333;">_diff</span><span class="p">,</span><span class="mi" style="color: #099;">0</span><span class="p">))</span> <span class="o" style="font-weight: 600;">!=</span> <span class="mi" style="color: #099;">0</span><span class="p">)</span> <span class="p">{</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="3199" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="3199" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3199,7 +3199,7 @@ count_trailing_zeroes_128 (__m128i _diff) {</td>
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3199
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3199
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<pre style="margin: 0;"> <span id="LC3199" class="line" lang="c"> <span class="k" style="font-weight: 600;">return</span> <span class="mi" style="color: #099;">64</span> <span class="o" style="font-weight: 600;">+</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">int</span><span class="p">)</span> <span class="n" style="color: #333;">_tzcnt_u64</span><span class="p">(</span><span class="n" style="color: #333;">_mm_extract_epi64</span><span class="p">(</span><span class="n" style="color: #333;">_diff</span><span class="p">,</span><span class="mi" style="color: #099;">1</span><span class="p">));</span></span>
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3200
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3200
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<pre style="margin: 0;"> <span id="LC3200" class="line" lang="c"> <span class="p">}</span></span>
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3201
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3201
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<pre style="margin: 0;"> <span id="LC3201" class="line" lang="c"></span>
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3202
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<pre style="margin: 0;">-<span id="LC3202" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#elif defined(HAVE_SSE4_1)</span></span>
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<pre style="margin: 0;">+<span id="LC3202" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#elif defined(HAVE_SSE4_1)<span class="idiff left right"> && defined(HAVE_MM_EXTRACT_EPI64)</span></span></span>
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3203
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3203
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<pre style="margin: 0;"> <span id="LC3203" class="line" lang="c"> <span class="n" style="color: #333;">UINT8</span> <span class="n" style="color: #333;">x</span><span class="p">;</span></span>
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3204
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3204
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<pre style="margin: 0;"> <span id="LC3204" class="line" lang="c"></span>
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3205
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3205
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<pre style="margin: 0;"> <span id="LC3205" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">((</span><span class="n" style="color: #333;">x</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_extract_epi64</span><span class="p">(</span><span class="n" style="color: #333;">_diff</span><span class="p">,</span><span class="mi" style="color: #099;">0</span><span class="p">))</span> <span class="o" style="font-weight: 600;">!=</span> <span class="mi" style="color: #099;">0</span><span class="p">)</span> <span class="p">{</span></span>
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<a href="https://salsa.debian.org/med-team/gmap/compare/61df26f32815f41ba4b0da80edd64aa49844c04a...e0f8e00d85afb7e62a7704bf4ad316f11c8f913d#49786cab443f0fbab3b5bb48f2f310040d725d74"><strong>src/genome128_hr.c</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -20403,7 +20403,7 @@ Genome_hr_setup (Genomecomp_T *ref_blocks_in, Genomecomp_T *snp_blocks_in,</td>
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20403
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20403
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<pre style="margin: 0;"> <span id="LC20403" class="line" lang="c"></span>
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20404
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20404
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<pre style="margin: 0;"> <span id="LC20404" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#if defined(HAVE_POPCNT)</span></span>
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20405
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20405
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<pre style="margin: 0;"> <span id="LC20405" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#define popcount_ones_256(_diff) (_popcnt64(_mm256_extract_epi64(_diff,0)) + _popcnt64(_mm256_extract_epi64(_diff,1)) + popcnt64(_mm256_extract_epi64(_diff,2)) + _popcnt64(_mm256_extract_epi64(_diff,3)))</span></span>
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20406
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<pre style="margin: 0;">-<span id="LC20406" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#elif defined(HAVE_MM_POPCNT)</span></span>
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<pre style="margin: 0;">+<span id="LC20406" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#elif defined(HAVE_MM_POPCNT)<span class="idiff left right"> && defined(HAVE_MM_POPCNT_U64)</span></span></span>
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20407
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20407
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<pre style="margin: 0;"> <span id="LC20407" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#define popcount_ones_256(_diff) (_mm_popcnt_u64(_mm256_extract_epi64(_diff,0)) + _mm_popcnt_u64(_mm256_extract_epi64(_diff,1)) + _mm_popcnt_u64(_mm256_extract_epi64(_diff,2)) + _mm_popcnt_u64(_mm256_extract_epi64(_diff,3)))</span></span>
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20408
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20408
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<pre style="margin: 0;"> <span id="LC20408" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#else</span></span>
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20409
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20409
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<pre style="margin: 0;"> <span id="LC20409" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#define popcount_ones_256(_diff) (__builtin_popcountll(_mm256_extract_epi64(_diff,0)) + __builtin_popcountll(_mm256_extract_epi64(_diff,1)) + __builtin_popcountll(_mm256_extract_epi64(_diff,2)) + __builtin_popcountll(_mm256_extract_epi64(_diff,3)))</span></span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="20634" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -20634,7 +20634,7 @@ set_end_128 (__m128i _diff, int enddiscard) {</td>
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20634
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<pre style="margin: 0;"> <span id="LC20634" class="line" lang="c"><span class="p">}</span></span>
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20635
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20635
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<pre style="margin: 0;"> <span id="LC20635" class="line" lang="c"></span>
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<pre style="margin: 0;"> <span id="LC20636" class="line" lang="c"></span>
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<pre style="margin: 0;">-<span id="LC20637" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#if !defined(HAVE_SSE4_2)</span></span>
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<pre style="margin: 0;">+<span id="LC20637" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#if !defined(HAVE_SSE4_2)<span class="idiff left right"> || !defined(HAVE_MM_EXTRACT_EPI64)</span></span></span>
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<pre style="margin: 0;"> <span id="LC20638" class="line" lang="c"></span>
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20639
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20639
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<pre style="margin: 0;"> <span id="LC20639" class="line" lang="c"><span class="c" style="color: #998; font-style: italic;">#if 0</span></span>
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20640
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<pre style="margin: 0;"> <span id="LC20640" class="line" lang="c"><span class="c" style="color: #998; font-style: italic;">/* Naive method for pre-SSE4.2. Requires four popcount operations. */</span></span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="20689" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -20689,7 +20689,7 @@ count_leading_zeroes_128 (__m128i _diff) {</td>
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20689
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20689
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<pre style="margin: 0;"> <span id="LC20689" class="line" lang="c"> <span class="n" style="color: #333;">debug4</span><span class="p">(</span><span class="n" style="color: #333;">printf</span><span class="p">(</span><span class="s" style="color: #d14;">"Entered count_leading_zeroes_128 with "</span><span class="p">));</span></span>
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20690
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20690
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<pre style="margin: 0;"> <span id="LC20690" class="line" lang="c"> <span class="n" style="color: #333;">debug4</span><span class="p">(</span><span class="n" style="color: #333;">print_vector_hex</span><span class="p">(</span><span class="n" style="color: #333;">_diff</span><span class="p">));</span></span>
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<pre style="margin: 0;"> <span id="LC20691" class="line" lang="c"></span>
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<pre style="margin: 0;">-<span id="LC20692" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#if defined(HAVE_SSE4_2) && defined(HAVE_LZCNT)</span></span>
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<pre style="margin: 0;">+<span id="LC20692" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#if defined(HAVE_SSE4_2) && defined(HAVE_LZCNT)<span class="idiff left right"> && defined(HAVE_MM_EXTRACT_EPI64)</span></span></span>
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<pre style="margin: 0;"> <span id="LC20693" class="line" lang="c"> <span class="n" style="color: #333;">UINT8</span> <span class="n" style="color: #333;">x</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC20694" class="line" lang="c"></span>
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<pre style="margin: 0;"> <span id="LC20695" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">((</span><span class="n" style="color: #333;">x</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_extract_epi64</span><span class="p">(</span><span class="n" style="color: #333;">_diff</span><span class="p">,</span><span class="mi" style="color: #099;">1</span><span class="p">))</span> <span class="o" style="font-weight: 600;">!=</span> <span class="mi" style="color: #099;">0</span><span class="p">)</span> <span class="p">{</span></span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="20698" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -20698,7 +20698,7 @@ count_leading_zeroes_128 (__m128i _diff) {</td>
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20698
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<pre style="margin: 0;"> <span id="LC20698" class="line" lang="c"> <span class="k" style="font-weight: 600;">return</span> <span class="mi" style="color: #099;">64</span> <span class="o" style="font-weight: 600;">+</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">int</span><span class="p">)</span> <span class="n" style="color: #333;">_lzcnt_u64</span><span class="p">(</span><span class="n" style="color: #333;">_mm_extract_epi64</span><span class="p">(</span><span class="n" style="color: #333;">_diff</span><span class="p">,</span><span class="mi" style="color: #099;">0</span><span class="p">));</span></span>
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20699
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<pre style="margin: 0;"> <span id="LC20699" class="line" lang="c"> <span class="p">}</span></span>
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20700
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20700
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<pre style="margin: 0;"> <span id="LC20700" class="line" lang="c"></span>
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<pre style="margin: 0;">-<span id="LC20701" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#elif defined(HAVE_SSE4_1)</span></span>
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<pre style="margin: 0;">+<span id="LC20701" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#elif defined(HAVE_SSE4_1)<span class="idiff left right"> && defined(HAVE_MM_EXTRACT_EPI64)</span></span></span>
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<pre style="margin: 0;"> <span id="LC20702" class="line" lang="c"> <span class="n" style="color: #333;">UINT8</span> <span class="n" style="color: #333;">x</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC20703" class="line" lang="c"></span>
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20704
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20704
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<pre style="margin: 0;"> <span id="LC20704" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">((</span><span class="n" style="color: #333;">x</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_extract_epi64</span><span class="p">(</span><span class="n" style="color: #333;">_diff</span><span class="p">,</span><span class="mi" style="color: #099;">1</span><span class="p">))</span> <span class="o" style="font-weight: 600;">!=</span> <span class="mi" style="color: #099;">0</span><span class="p">)</span> <span class="p">{</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="20732" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="20732" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -20732,7 +20732,7 @@ count_trailing_zeroes_128 (__m128i _diff) {</td>
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20732
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20732
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<pre style="margin: 0;"> <span id="LC20732" class="line" lang="c"> <span class="n" style="color: #333;">debug4</span><span class="p">(</span><span class="n" style="color: #333;">printf</span><span class="p">(</span><span class="s" style="color: #d14;">"Entered count_trailing_zeroes_128 with "</span><span class="p">));</span></span>
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20733
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20733
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<pre style="margin: 0;"> <span id="LC20733" class="line" lang="c"> <span class="n" style="color: #333;">debug4</span><span class="p">(</span><span class="n" style="color: #333;">print_vector_hex</span><span class="p">(</span><span class="n" style="color: #333;">_diff</span><span class="p">));</span></span>
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20734
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<pre style="margin: 0;"> <span id="LC20734" class="line" lang="c"></span>
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20735
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<pre style="margin: 0;">-<span id="LC20735" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#if defined(HAVE_SSE4_2) && defined(HAVE_TZCNT)</span></span>
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<pre style="margin: 0;">+<span id="LC20735" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#if defined(HAVE_SSE4_2) && defined(HAVE_TZCNT)<span class="idiff left right"> && defined(HAVE_MM_EXTRACT_EPI64)</span></span></span>
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<pre style="margin: 0;"> <span id="LC20736" class="line" lang="c"> <span class="n" style="color: #333;">UINT8</span> <span class="n" style="color: #333;">x</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC20737" class="line" lang="c"></span>
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<pre style="margin: 0;"> <span id="LC20738" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">((</span><span class="n" style="color: #333;">x</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_extract_epi64</span><span class="p">(</span><span class="n" style="color: #333;">_diff</span><span class="p">,</span><span class="mi" style="color: #099;">0</span><span class="p">))</span> <span class="o" style="font-weight: 600;">!=</span> <span class="mi" style="color: #099;">0</span><span class="p">)</span> <span class="p">{</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -20741,7 +20741,7 @@ count_trailing_zeroes_128 (__m128i _diff) {</td>
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<pre style="margin: 0;"> <span id="LC20741" class="line" lang="c"> <span class="k" style="font-weight: 600;">return</span> <span class="mi" style="color: #099;">64</span> <span class="o" style="font-weight: 600;">+</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">int</span><span class="p">)</span> <span class="n" style="color: #333;">_tzcnt_u64</span><span class="p">(</span><span class="n" style="color: #333;">_mm_extract_epi64</span><span class="p">(</span><span class="n" style="color: #333;">_diff</span><span class="p">,</span><span class="mi" style="color: #099;">1</span><span class="p">));</span></span>
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<pre style="margin: 0;"> <span id="LC20742" class="line" lang="c"> <span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC20743" class="line" lang="c"></span>
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<pre style="margin: 0;">-<span id="LC20744" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#elif defined(HAVE_SSE4_1)</span></span>
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<pre style="margin: 0;">+<span id="LC20744" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#elif defined(HAVE_SSE4_1)<span class="idiff left right"> && defined(HAVE_MM_EXTRACT_EPI64)</span></span></span>
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<pre style="margin: 0;"> <span id="LC20745" class="line" lang="c"> <span class="n" style="color: #333;">UINT8</span> <span class="n" style="color: #333;">x</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC20746" class="line" lang="c"></span>
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<pre style="margin: 0;"> <span id="LC20747" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">((</span><span class="n" style="color: #333;">x</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_extract_epi64</span><span class="p">(</span><span class="n" style="color: #333;">_diff</span><span class="p">,</span><span class="mi" style="color: #099;">0</span><span class="p">))</span> <span class="o" style="font-weight: 600;">!=</span> <span class="mi" style="color: #099;">0</span><span class="p">)</span> <span class="p">{</span></span>
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<a href="https://salsa.debian.org/med-team/gmap/compare/61df26f32815f41ba4b0da80edd64aa49844c04a...e0f8e00d85afb7e62a7704bf4ad316f11c8f913d#c98399a907bb515fa302e9111b148f9f0da3c8ba"><strong>src/kmer-search.c</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -215,7 +215,8 @@ static Oligospace_T oligobase_mask;</td>
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<pre style="margin: 0;"> <span id="LC215" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;">/* Algorithm 2: Stage3end_complete_path_run_gmap: complete_path -> hits */</span></span>
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<pre style="margin: 0;"> <span id="LC216" class="line" lang="c"></span>
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<pre style="margin: 0;"> <span id="LC217" class="line" lang="c"></span>
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<pre style="margin: 0;">-<span id="LC218" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#ifdef HAVE_SSE2</span></span>
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<pre style="margin: 0;">+<span id="LC218" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#ifdef DEBUG8</span></span>
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<pre style="margin: 0;">+<span id="LC219" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#ifdef HAVE_SSE4_1</span></span>
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<pre style="margin: 0;"> <span id="LC220" class="line" lang="c"><span class="k" style="font-weight: 600;">static</span> <span class="kt" style="color: #458; font-weight: 600;">void</span></span>
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<pre style="margin: 0;"> <span id="LC221" class="line" lang="c"><span class="nf" style="color: #900; font-weight: 600;">print_vector_dec</span> <span class="p">(</span><span class="n" style="color: #333;">__m128i</span> <span class="n" style="color: #333;">x</span><span class="p">)</span> <span class="p">{</span></span>
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<pre style="margin: 0;"> <span id="LC222" class="line" lang="c"> <span class="n" style="color: #333;">printf</span><span class="p">(</span><span class="s" style="color: #d14;">"%d %d %d %d</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">,</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -223,6 +224,7 @@ print_vector_dec (__m128i x) {</td>
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<pre style="margin: 0;"> <span id="LC224" class="line" lang="c"> <span class="k" style="font-weight: 600;">return</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC225" class="line" lang="c"><span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC226" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<pre style="margin: 0;">+<span id="LC227" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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228
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<pre style="margin: 0;"> <span id="LC228" class="line" lang="c"></span>
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227
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229
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<pre style="margin: 0;"> <span id="LC229" class="line" lang="c"></span>
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228
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230
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<pre style="margin: 0;"> <span id="LC230" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#if !defined(HAVE_SSE4_2)</span></span>
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<a href="https://salsa.debian.org/med-team/gmap/compare/61df26f32815f41ba4b0da80edd64aa49844c04a...e0f8e00d85afb7e62a7704bf4ad316f11c8f913d#54ceee4c74b538a43890ef0f5565fb7f4dbe7c7e"><strong>tests/Makefile.in</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="109" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="109" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -109,6 +109,7 @@ am__aclocal_m4_deps = $(top_srcdir)/config/libtool.m4 \</td>
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109
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109
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<pre style="margin: 0;"> <span id="LC109" class="line" lang="make"> <span class="nv" style="color: teal;">$(top_srcdir)</span>/config/fopen.m4 <span class="nv" style="color: teal;">$(top_srcdir)</span>/config/asm-bsr.m4 <span class="se" style="color: #d14;">\</span></span>
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110
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110
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<pre style="margin: 0;"> <span id="LC110" class="line" lang="make"> <span class="nv" style="color: teal;">$(top_srcdir)</span>/config/sse2_shift_defect.m4 <span class="se" style="color: #d14;">\</span></span>
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111
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111
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<pre style="margin: 0;"> <span id="LC111" class="line" lang="make"> <span class="nv" style="color: teal;">$(top_srcdir)</span>/config/builtin-popcount.m4 <span class="se" style="color: #d14;">\</span></span>
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112
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<pre style="margin: 0;">+<span id="LC112" class="line" lang="make"> <span class="nv" style="color: teal;">$(top_srcdir)</span>/config/simd-intrinsics.m4 <span class="se" style="color: #d14;">\</span></span>
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112
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113
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<pre style="margin: 0;"> <span id="LC113" class="line" lang="make"> <span class="nv" style="color: teal;">$(top_srcdir)</span>/config/ax_cpuid_intel.m4 <span class="se" style="color: #d14;">\</span></span>
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113
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114
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<pre style="margin: 0;"> <span id="LC114" class="line" lang="make"> <span class="nv" style="color: teal;">$(top_srcdir)</span>/config/ax_cpuid_non_intel.m4 <span class="se" style="color: #d14;">\</span></span>
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114
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115
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<pre style="margin: 0;"> <span id="LC115" class="line" lang="make"> <span class="nv" style="color: teal;">$(top_srcdir)</span>/config/ax_check_compile_flag.m4 <span class="se" style="color: #d14;">\</span></span>
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<a href="https://salsa.debian.org/med-team/gmap/compare/61df26f32815f41ba4b0da80edd64aa49844c04a...e0f8e00d85afb7e62a7704bf4ad316f11c8f913d#4b89eabbc5fbb42cef008933ba3ae489e13b62eb"><strong>util/Makefile.in</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="110" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="110" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -110,6 +110,7 @@ am__aclocal_m4_deps = $(top_srcdir)/config/libtool.m4 \</td>
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110
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110
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<pre style="margin: 0;"> <span id="LC110" class="line" lang="make"> <span class="nv" style="color: teal;">$(top_srcdir)</span>/config/fopen.m4 <span class="nv" style="color: teal;">$(top_srcdir)</span>/config/asm-bsr.m4 <span class="se" style="color: #d14;">\</span></span>
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111
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111
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<pre style="margin: 0;"> <span id="LC111" class="line" lang="make"> <span class="nv" style="color: teal;">$(top_srcdir)</span>/config/sse2_shift_defect.m4 <span class="se" style="color: #d14;">\</span></span>
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112
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112
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<pre style="margin: 0;"> <span id="LC112" class="line" lang="make"> <span class="nv" style="color: teal;">$(top_srcdir)</span>/config/builtin-popcount.m4 <span class="se" style="color: #d14;">\</span></span>
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113
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<pre style="margin: 0;">+<span id="LC113" class="line" lang="make"> <span class="nv" style="color: teal;">$(top_srcdir)</span>/config/simd-intrinsics.m4 <span class="se" style="color: #d14;">\</span></span>
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113
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114
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<pre style="margin: 0;"> <span id="LC114" class="line" lang="make"> <span class="nv" style="color: teal;">$(top_srcdir)</span>/config/ax_cpuid_intel.m4 <span class="se" style="color: #d14;">\</span></span>
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114
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115
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<pre style="margin: 0;"> <span id="LC115" class="line" lang="make"> <span class="nv" style="color: teal;">$(top_srcdir)</span>/config/ax_cpuid_non_intel.m4 <span class="se" style="color: #d14;">\</span></span>
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115
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116
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<pre style="margin: 0;"> <span id="LC116" class="line" lang="make"> <span class="nv" style="color: teal;">$(top_srcdir)</span>/config/ax_check_compile_flag.m4 <span class="se" style="color: #d14;">\</span></span>
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