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<h3>
Sascha Steinbiss pushed to branch master
at <a href="https://salsa.debian.org/med-team/augustus">Debian Med / augustus</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/augustus/commit/dc8b06c99b94dff8e0fcba9967a22712c9181fc0">dc8b06c9</a></strong>
<div>
<span>by Sascha Steinbiss</span>
<i>at 2018-10-06T12:12:10Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">exclude training directory from source tarball
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/augustus/commit/48b3b5fcf5c475285f89e0c6b66cb40faa4f725a">48b3b5fc</a></strong>
<div>
<span>by Sascha Steinbiss</span>
<i>at 2018-10-06T12:12:19Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">adjust watchfile
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/augustus/commit/faf2de9015a2aca3fcc4e0fccf6a4a2142cf6d13">faf2de90</a></strong>
<div>
<span>by Sascha Steinbiss</span>
<i>at 2018-10-06T12:12:35Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 3.3.2+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/augustus/commit/4850094f27cf7a1dded878fdb20f9e4a79a27316">4850094f</a></strong>
<div>
<span>by Sascha Steinbiss</span>
<i>at 2018-10-06T12:16:53Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Merge tag 'upstream/3.3.2+dfsg'
Upstream version 3.3.2+dfsg
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/augustus/commit/2c3dfff99cc11cfec6390c14707f0eb5801f4a6e">2c3dfff9</a></strong>
<div>
<span>by Sascha Steinbiss</span>
<i>at 2018-10-06T14:16:58Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">new upstream release
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/augustus/commit/2e3aa218ffd4b99121c04b076db57d10b4e7b9ed">2e3aa218</a></strong>
<div>
<span>by Sascha Steinbiss</span>
<i>at 2018-10-06T14:17:20Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">exclude new training directory from tarball
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/augustus/commit/76cd1e57d78f4f6f81b1eb0dc2fe6697e0f66308">76cd1e57</a></strong>
<div>
<span>by Sascha Steinbiss</span>
<i>at 2018-10-06T14:17:33Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">adjust doc-base
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/augustus/commit/c348d21a2b89a3fde2abf027e4321c9905068bc4">c348d21a</a></strong>
<div>
<span>by Sascha Steinbiss</span>
<i>at 2018-10-06T14:17:45Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">use secure Format URL in d/copyright
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/augustus/commit/834678886defd1fb18d0142e4d1b4deceb338ecb">83467888</a></strong>
<div>
<span>by Sascha Steinbiss</span>
<i>at 2018-10-06T14:17:57Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">add new build-deps for OpenSSL and libcurl
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/augustus/commit/2576a219a07be942ddd9da478b043db9ba73bca2">2576a219</a></strong>
<div>
<span>by Sascha Steinbiss</span>
<i>at 2018-10-06T14:18:10Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">refresh patches
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/augustus/commit/64d80ebdeb838c29c53969def521720d150238c7">64d80ebd</a></strong>
<div>
<span>by Sascha Steinbiss</span>
<i>at 2018-10-06T14:18:19Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">set AUGUSTUS_CONFIG_PATH at build time to enable tests
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/augustus/commit/d8db1020b7085eeb3487115f906f6f314fc044f7">d8db1020</a></strong>
<div>
<span>by Sascha Steinbiss</span>
<i>at 2018-10-06T15:45:56Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">re-introduce missing Format field
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#a5cc2925ca8258af241be7e5b0381edf30266302">
<span class="new-file">
+
.gitignore
</span>
</a>
</li>
<li class="file-stats">
<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">
<span class="new-file">
+
.travis.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#6651ddff6eb82c840ced7c1dddee15c6e1913dd4">
<span class="new-file">
+
Dockerfile
</span>
</a>
</li>
<li class="file-stats">
<a href="#0bf8e07cde43468bfe21b33d874b182669de855d">
HISTORY.TXT
</a>
</li>
<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
Makefile
</a>
</li>
<li class="file-stats">
<a href="#1e61cbf49d4c428cc1453b543f581d183ad3e88f">
README-cgp.txt
</a>
</li>
<li class="file-stats">
<a href="#1ed6f5782121b1d5ac82aca6d59599499295ccf2">
<span class="deleted-file">
−
README.TXT
</span>
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
<span class="new-file">
+
README.md
</span>
</a>
</li>
<li class="file-stats">
<a href="#3ff7aa93d527572593aa9d194b680d85a8c01da7">
auxprogs/aln2wig/Makefile
</a>
</li>
<li class="file-stats">
<a href="#79190e737b673450f87f83c8f91102d4de682743">
auxprogs/aln2wig/aln2wig.c
</a>
</li>
<li class="file-stats">
<a href="#cdf6e1407e50d520feae3e2bdf544854ce2fd566">
auxprogs/auxBamFilters/README
</a>
</li>
<li class="file-stats">
<a href="#20bcc49f96b957b63ab170f271d5e60ec94c2169">
auxprogs/auxBamFilters/eg1.s.bam
</a>
</li>
<li class="file-stats">
<a href="#a99efd6f138795c47fd7fad16013da897fb345f5">
auxprogs/auxBamFilters/eg2.bam
</a>
</li>
<li class="file-stats">
<a href="#5a5220063e8abc868c40cb99b65678eab0c467cf">
auxprogs/auxBamFilters/operation_H_filter.txt
</a>
</li>
<li class="file-stats">
<a href="#aba5274bb037059b5004bd2cffa96e6f97cb5462">
auxprogs/auxBamFilters/operation_N_filter.txt
</a>
</li>
<li class="file-stats">
<a href="#52d38dca1b9509f2369cdae677855c47047aab0e">
auxprogs/auxBamFilters/toyAlignments.bam
</a>
</li>
<li class="file-stats">
<a href="#ce64319b90f1192ec3897ebb0ef99b9c5a2caa7e">
auxprogs/bam2wig/Makefile
</a>
</li>
<li class="file-stats">
<a href="#032d438b2adb9ead01a1d28c77410b66231802b6">
auxprogs/checkTargetSortedness/Makefile
</a>
</li>
<li class="file-stats">
<a href="#88a704b00e9010bcf958d8341f9a13ebff4eec4f">
auxprogs/checkTargetSortedness/checkTargetSortedness.c
</a>
</li>
<li class="file-stats">
<a href="#a7deae548a096fca3a44383f85d8784f0d3e99eb">
auxprogs/compileSpliceCands/Makefile
</a>
</li>
<li class="file-stats">
<a href="#d5c4e129e6c4d0321e7bf6ed681672adb67799b5">
auxprogs/compileSpliceCands/chr21.fa
</a>
</li>
<li class="file-stats">
<a href="#546c2ad233a361c2a67199262cbafa4194f6c7f5">
auxprogs/compileSpliceCands/compileSpliceCands.c
</a>
</li>
<li class="file-stats">
<a href="#f748f0e9852bd2d6a8e97af3e3fb966819f41ac1">
auxprogs/compileSpliceCands/list.c
</a>
</li>
<li class="file-stats">
<a href="#47d540f084e1e44ba2836f8bfb762ee8057fd798">
auxprogs/compileSpliceCands/list.h
</a>
</li>
<li class="file-stats">
<a href="#82162156e83d3775aae02612795c6da760acdec0">
auxprogs/compileSpliceCands/out.gff
</a>
</li>
<li class="file-stats">
<a href="#48bfa381b4079d467ecc6ea70ca594270e246e5c">
auxprogs/filterBam/README
</a>
</li>
<li class="file-stats">
<a href="#8a05581aa695b739b8d2baac6d1d9fe2bdef5057">
auxprogs/filterBam/src/bamtools/LICENSE
</a>
</li>
<li class="file-stats">
<a href="#898f2aaedd9f1084a787cba642e4074f1b9cdf5f">
auxprogs/filterBam/src/bamtools/bamtools_sort.h
</a>
</li>
<li class="file-stats">
<a href="#784d4bd9c30af60bed349bbb9f5a3e9f57feb102">
auxprogs/filterBam/src/bamtools/bamtools_tool.h
</a>
</li>
<li class="file-stats">
<a href="#e43e3d8381d425f410ceab30708e6aeba9c029e8">
auxprogs/filterBam/src/filterBam.cc
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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