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<h3>
Sascha Steinbiss pushed to branch master
at <a href="https://salsa.debian.org/med-team/mash">Debian Med / mash</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/mash/commit/89bf5d7425a8d6406ec91e4b23239749e5a7c98a">89bf5d74</a></strong>
<div>
<span>by Sascha Steinbiss</span>
<i>at 2018-10-11T13:32:47Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.1</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/mash/commit/e2c4d72e7f4028a19532ded443035669e64bf5e3">e2c4d72e</a></strong>
<div>
<span>by Sascha Steinbiss</span>
<i>at 2018-10-11T13:32:54Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Merge tag 'upstream/2.1'
Upstream version 2.1
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/mash/commit/342dc029fd67f472e9ea6557add722006d3a71bb">342dc029</a></strong>
<div>
<span>by Sascha Steinbiss</span>
<i>at 2018-10-11T13:51:34Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">new upstream release
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/mash/commit/f57f9a89bce648ecbf1d9cb4102d466a53b7098b">f57f9a89</a></strong>
<div>
<span>by Sascha Steinbiss</span>
<i>at 2018-10-11T13:51:44Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">adjust doc-base paths
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/mash/commit/ae87214791ee274ac08a5b62449704982f386b40">ae872147</a></strong>
<div>
<span>by Sascha Steinbiss</span>
<i>at 2018-10-11T13:52:09Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">remove obsolete dependencies and options
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/mash/commit/ea72e474e3bd3f973c027b13a04cd89d74b531f0">ea72e474</a></strong>
<div>
<span>by Sascha Steinbiss</span>
<i>at 2018-10-11T13:52:32Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">use debhelper 11
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/mash/commit/7509dd3c8c9b18aa82e45a93612e684b4c4c3c43">7509dd3c</a></strong>
<div>
<span>by Sascha Steinbiss</span>
<i>at 2018-10-11T13:52:43Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">bump Standards-Version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/mash/commit/d1810c6d3289c3e702ef8ecb487412686cef96c4">d1810c6d</a></strong>
<div>
<span>by Sascha Steinbiss</span>
<i>at 2018-10-11T13:52:53Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">update VCS fields to Salsa URLs
</pre>
</li>
</ul>
<h4>29 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#7cfedbc97673f872cd1f9bdd3bdd2509acdbe496">
INSTALL.txt
</a>
</li>
<li class="file-stats">
<a href="#4faecea6d9857941b442698cdcbd38a141ff746e">
Makefile.in
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
<span class="new-file">
+
README.md
</span>
</a>
</li>
<li class="file-stats">
<a href="#a4cde1b4e99999e865d637ce51d4307e661db090">
<span class="deleted-file">
−
data/refseq.msh
</span>
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
debian/compat
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#b30c8c490ecc23d67b6db1453fdace73f2eb5cb8">
debian/mash-doc.doc-base
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
<li class="file-stats">
<a href="#10c9d422887ff3796fa73258e801014a688c7a49">
doc/sphinx/conf.py
</a>
</li>
<li class="file-stats">
<a href="#5a765931f4b88491a9e9eb9822872702c171539c">
doc/sphinx/index.rst
</a>
</li>
<li class="file-stats">
<a href="#b99259b5060527502d5eb317a12eb5e75726a44c">
doc/sphinx/tutorials.rst
</a>
</li>
<li class="file-stats">
<a href="#2fffcd35413c3c60b76498e1abc911123672535d">
src/mash/CommandDistance.cpp
</a>
</li>
<li class="file-stats">
<a href="#b1869287016c57e645de15f0b9ede057292d44b7">
src/mash/CommandScreen.cpp
</a>
</li>
<li class="file-stats">
<a href="#115b588d4bd397b69e862a129a225231937986c8">
src/mash/CommandSketch.cpp
</a>
</li>
<li class="file-stats">
<a href="#e8b45cfb4cd2406e50d5c27273b019116a793f02">
<span class="new-file">
+
src/mash/CommandTriangle.cpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#d02e98b4956e5520d320ab853dea3fc999d68ce8">
<span class="new-file">
+
src/mash/CommandTriangle.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#ccf97c63b67930f1487017e1286d34ab3528b2a8">
src/mash/Sketch.cpp
</a>
</li>
<li class="file-stats">
<a href="#9d08c46a377ad5b15c36b036bb776c13463306b3">
src/mash/Sketch.h
</a>
</li>
<li class="file-stats">
<a href="#07a8fb94d39c3900f2141bb7cad3bd6b6efaef85">
src/mash/mash.cpp
</a>
</li>
<li class="file-stats">
<a href="#df40e93b0afa70eaf33f87bac8e334a9b83e8779">
src/mash/sketchParameterSetup.cpp
</a>
</li>
<li class="file-stats">
<a href="#2ecd5edfb9906ffd092b9b8b4d28f6cb2eed2783">
src/mash/version.h
</a>
</li>
<li class="file-stats">
<a href="#5b73bbcaac7f05dc428a0aeaf08c184902b2cdeb">
<span class="new-file">
+
test/genome1.fna
</span>
</a>
</li>
<li class="file-stats">
<a href="#fae91d65182047c7e4e6850209c33d07f337828a">
<span class="new-file">
+
test/genome2.fna
</span>
</a>
</li>
<li class="file-stats">
<a href="#8cfac77562a6329f9a9bf5acebd880445ee43946">
<span class="new-file">
+
test/genome3.fna
</span>
</a>
</li>
<li class="file-stats">
<a href="#3405b9c53f6ceb7fc538f6cd7a89139136b7a088">
<span class="new-file">
+
test/reads1.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#eb1240a9bc93531d5826c88c03a177cff2e5af67">
<span class="new-file">
+
test/reads2.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#b4c4164bd175771b995a8e29585b7bef75b76aeb">
<span class="new-file">
+
test/ref/genomes.dist
</span>
</a>
</li>
<li class="file-stats">
<a href="#b856fa5f4c428fbb084408703c1ad95fd71c0832">
<span class="new-file">
+
test/ref/genomes.json
</span>
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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