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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/pbgenomicconsensus">Debian Med / pbgenomicconsensus</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbgenomicconsensus/commit/3787c5f28e62a2af625c28504c06ce2d680e71ea">3787c5f2</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-09T16:13:37Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update copyright
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbgenomicconsensus/commit/08fe4267987a7a8a7dff6c8fafe12f51fdbfd1b2">08fe4267</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-09T16:16:05Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.3.2</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbgenomicconsensus/commit/b70513cec1e79f72dc9205aaa4cabd44014d6d60">b70513ce</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-09T16:16:36Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/2.3.2'
Update to upstream version '2.3.2'
with Debian dir 81cca0cd988fe320cc4a8014c69c0ac496899de9</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbgenomicconsensus/commit/2e244e0d4ed7ca3ae22df76301a7be651220334b">2e244e0d</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-09T16:16:36Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbgenomicconsensus/commit/7cb3132dcf3670064f0f632d29a49c4b6848f955">7cb3132d</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-09T16:16:36Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debhelper 11
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbgenomicconsensus/commit/b26f368133293a600de7fdf0c1f63f145da575be">b26f3681</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-09T16:19:52Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Point Vcs fields to salsa.debian.org
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbgenomicconsensus/commit/0b941bd32edddd2c76157bbdd7b713bbf136ed48">0b941bd3</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-09T16:19:52Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Standards-Version: 4.2.1
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbgenomicconsensus/commit/52ca31d4c0c1aa1ca3e2f04d3015d6a0f61b98ab">52ca31d4</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-09T16:31:17Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Adapt patches
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbgenomicconsensus/commit/d6bab9739d05cd2af8cf364dad8c55de44cd5125">d6bab973</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-09T18:07:17Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Build-Depends: python-pytest
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbgenomicconsensus/commit/90dea911b91c7baef4dbd122961c55083a70d573">90dea911</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-11T07:46:40Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Build-Depends: python-consensuscore2 (to be uploaded, see ITP #847310)
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbgenomicconsensus/commit/cd41c1f5453c0b9e132cc71c354a79a54b298ea8">cd41c1f5</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-11T07:47:40Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Respect DEB_BUILD_OPTIONS in override_dh_auto_test
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbgenomicconsensus/commit/1d68d953b4a2936274405e20158d81487492df99">1d68d953</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-11T07:58:00Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Remove test that requires non-existing package pbtestdata
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbgenomicconsensus/commit/324e464734774631d959f0db67fb663036561090">324e4647</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-11T09:43:08Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Try hard to make test suite work
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbgenomicconsensus/commit/b061330f33d039ec785be215e5ee3ab5eeeeab9b">b061330f</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-11T09:45:41Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Pre-create manpages
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbgenomicconsensus/commit/c7f52cf9751234aa7ac5dc26f873a59b9eec19af">c7f52cf9</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-11T09:46:25Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Pre-create manpages (seems there is no point in calling pandoc inside build process.)
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbgenomicconsensus/commit/8d55edcb5bb02b00cd236c919da07590869e8cf7">8d55edcb</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-11T09:52:14Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Mark as team upload
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbgenomicconsensus/commit/185a4fd5f993d0afc72ccb96a1c2bb86c120083a">185a4fd5</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-11T09:54:00Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Spelling
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbgenomicconsensus/commit/18d76f51241ec3b997fadd98736caf998a26f1d1">18d76f51</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-11T09:55:34Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Remove unused lintian-override
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#99c738e7d1f1f228db3f2802b37507b0ff0d0c0d">
GenomicConsensus/ResultCollector.py
</a>
</li>
<li class="file-stats">
<a href="#85ae376100cde4b8d9fe7228a847d70dc5540221">
GenomicConsensus/Worker.py
</a>
</li>
<li class="file-stats">
<a href="#438f7a424514a3e27a4a6fd3606f44eb75491140">
GenomicConsensus/__init__.py
</a>
</li>
<li class="file-stats">
<a href="#d1ddb567621a639c70a69c1ad02cf3fcd3a2a0fb">
GenomicConsensus/algorithmSelection.py
</a>
</li>
<li class="file-stats">
<a href="#6a798ff4a686434b9a5b173fcb1a47c7d1f57237">
GenomicConsensus/arrow/__init__.py
</a>
</li>
<li class="file-stats">
<a href="#e98081513decc5c2f9c0b043551255f723e3e716">
GenomicConsensus/arrow/arrow.py
</a>
</li>
<li class="file-stats">
<a href="#678b41493cf62208dfad16db893dfaff649c6763">
GenomicConsensus/arrow/diploid.py
</a>
</li>
<li class="file-stats">
<a href="#10a7492bddaa0f2a5c4ee65ad9b750d9e2e0fa2a">
<span class="deleted-file">
−
GenomicConsensus/arrow/evidence.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#48d5db9c8417ce95dae83f2d5437fea893c40f2a">
GenomicConsensus/arrow/model.py
</a>
</li>
<li class="file-stats">
<a href="#b98addc5fea67baffb881165f8b36bf6987445bc">
GenomicConsensus/arrow/utils.py
</a>
</li>
<li class="file-stats">
<a href="#4044a93d62b2752129f14e71ebd79e6d1319442a">
GenomicConsensus/consensus.py
</a>
</li>
<li class="file-stats">
<a href="#008d0e3444457abc4db366abc89cfc552c420f08">
GenomicConsensus/io/VariantsGffWriter.py
</a>
</li>
<li class="file-stats">
<a href="#07e6c57b2dbb1ad4d9cbe7d61e28b7da0035184e">
GenomicConsensus/io/VariantsVcfWriter.py
</a>
</li>
<li class="file-stats">
<a href="#a8d6103d0497e083ff2d22c5834c97bdc6eb461c">
GenomicConsensus/io/__init__.py
</a>
</li>
<li class="file-stats">
<a href="#5b1044c2f0a139d8c4d9f30987c98239dcf02c94">
GenomicConsensus/io/utils.py
</a>
</li>
<li class="file-stats">
<a href="#87125ef1f4971d3a71d4134fb08b0a2bbcf5275c">
GenomicConsensus/main.py
</a>
</li>
<li class="file-stats">
<a href="#4e9778bec0a993507bd561e9780cca7aea66c050">
GenomicConsensus/options.py
</a>
</li>
<li class="file-stats">
<a href="#51e2096352335dbbb81e0a625f6adfe83c2c4210">
GenomicConsensus/plurality/__init__.py
</a>
</li>
<li class="file-stats">
<a href="#328414e82d8f9c897af7e23a97d9b65a8e705ac2">
GenomicConsensus/plurality/plurality.py
</a>
</li>
<li class="file-stats">
<a href="#d1c47c0879406bca7e4c97de1f29923126cc0e4b">
GenomicConsensus/poa/__init__.py
</a>
</li>
<li class="file-stats">
<a href="#15717a3bfe329895159f1f07cab42c961286f088">
GenomicConsensus/poa/poa.py
</a>
</li>
<li class="file-stats">
<a href="#8d53b81ddfbe049765226bda5186e520bc826625">
GenomicConsensus/quiver/__init__.py
</a>
</li>
<li class="file-stats">
<a href="#ac2c903d7f05c995229ca61352abffeb51d1bec8">
GenomicConsensus/quiver/diploid.py
</a>
</li>
<li class="file-stats">
<a href="#e23721c1b36a2e98ea3a7ecde3e9f4b0dfe611e1">
<span class="deleted-file">
−
GenomicConsensus/quiver/evidence.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#856baa2e3e9890bbfe4384654d1fe0837c91b6de">
GenomicConsensus/quiver/model.py
</a>
</li>
<li class="file-stats">
<a href="#4b0c4cfefba6ba2c26cd101d3e75167978675c95">
GenomicConsensus/quiver/quiver.py
</a>
</li>
<li class="file-stats">
<a href="#1560d6551e32d9e987a1dcbc0cc8dd594ada0a8a">
GenomicConsensus/quiver/utils.py
</a>
</li>
<li class="file-stats">
<a href="#b19840f44b34e4cb96fa721f9eed2fcab8ea9d55">
GenomicConsensus/reference.py
</a>
</li>
<li class="file-stats">
<a href="#d7e441f11981bebd8a3bf6bb2d9a4486e076fea3">
GenomicConsensus/utils.py
</a>
</li>
<li class="file-stats">
<a href="#e6b22af8a7794963f75a0e874a49e6d946562e46">
GenomicConsensus/variants.py
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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