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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/beast2-mcmc">Debian Med / beast2-mcmc</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/beast2-mcmc/commit/ed00a43c9b1f1fabb9823eafc336771fff13d2f1">ed00a43c</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-15T07:55:19Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Try two patches that might allow using antlr version 4.5 but failed
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/beast2-mcmc/commit/788d69cf7855b3ab5848dcf46af3d4b970302bcc">788d69cf</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-15T08:03:17Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.5.1+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/beast2-mcmc/commit/58f33850befb9121e84a29e5b1520eff04da694b">58f33850</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-15T08:03:36Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/2.5.1+dfsg'
Update to upstream version '2.5.1+dfsg'
with Debian dir 82b62b7d44ae148133b43f8c046d3c524cb775bc</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/beast2-mcmc/commit/1502a954b38954d1db78f98ae1bc656be94da72d">1502a954</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-15T08:03:36Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/beast2-mcmc/commit/7228f92b715295a1cc23e49b6d4b46c71b7d5e94">7228f92b</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-15T08:03:42Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Standards-Version: 4.2.1
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/beast2-mcmc/commit/694dc530e0aa4d4c9162348a5051501d8e385c98">694dc530</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-15T09:16:24Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Merge changelog entries
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#354079a72b91a4280407c16a36f47d1986fd85a5">
<span class="deleted-file">
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.classpath
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<li class="file-stats">
<a href="#a5cc2925ca8258af241be7e5b0381edf30266302">
.gitignore
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<li class="file-stats">
<a href="#6651ddff6eb82c840ced7c1dddee15c6e1913dd4">
Dockerfile
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<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
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<li class="file-stats">
<a href="#bdc348bf75801c527f51cdeddc8edf027f7ef35a">
build.xml
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#49a281b539249ee5d7f961595fa48306d3229f0e">
<span class="new-file">
+
debian/patches/revert_NewickLexer.java_to_antlr_4.5.patch
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<li class="file-stats">
<a href="#1a915e4c2a04020631c1bec778cd19db01c73449">
<span class="new-file">
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debian/patches/reverted_to_antlr_4.5_deacdc96.patch
</span>
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<a href="#8f664e2d2009a3cd20b47579df7825a0bbbfd6c3">
release/Linux/bin/applauncher
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<a href="#6c49fe986d915bedf0717ee5e595caf50f577f91">
release/Linux/bin/beast
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<a href="#a4b53cf3d8bd6040af7d857c817c824332f1d380">
release/Linux/bin/beauti
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<li class="file-stats">
<a href="#b63290f486c46509c6e1c919514bbfe7e74c4130">
release/Linux/bin/densitree
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<a href="#24288bfcbf228898d61e515b5f80c784bd0965ba">
release/Linux/bin/loganalyser
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<a href="#268236a1fa4e6ae4a2ef19b81049335446a3c67a">
release/Linux/bin/logcombiner
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<a href="#cc2b9d8d31b21e7be6d454ce3cbef5c56d49d092">
release/Linux/bin/packagemanager
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<a href="#fb81f11d5f340467d6331904a7ca185a04a71c18">
release/Linux/bin/treeannotator
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<a href="#79a36dddc60b5d94153c12834d3ec352c522095f">
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release/Mac/launch.c
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<li class="file-stats">
<a href="#7e30cd195ade384b348e0ce5a6e6d5f8994a2a26">
release/common/README.txt
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<li class="file-stats">
<a href="#ddb01bc519fc9ba9149a55420f5acfde52c1135b">
release/common/VERSION HISTORY.txt
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<li class="file-stats">
<a href="#16c9d4eece15f5ce2896ef371662e5fa25789a78">
src/beast/app/BEASTVersion.java
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<a href="#e1ec9fa6f50d77f0722a5e0697f87c368dcb80d5">
src/beast/app/BEASTVersion2.java
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<li class="file-stats">
<a href="#6407c157ece0d5c3c9267cfbf2ab99283f1eb248">
src/beast/app/BeastMCMC.java
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<a href="#5bfd7d5eae790c3aae520b5462cf8e361c44e0eb">
src/beast/app/DocMaker.java
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<li class="file-stats">
<a href="#00f96cbd9bcc8fabcc2e2dddcc85f3de38adf8e9">
src/beast/app/beastapp/BeastLauncher.java
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<li class="file-stats">
<a href="#28635088758a8387854f5edb6c993d1f8945edda">
src/beast/app/beastapp/BeastMain.java
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<li class="file-stats">
<a href="#c56a87e73bac83d75b274755054a2876dc8c5180">
src/beast/app/beauti/AlignmentViewer.java
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<li class="file-stats">
<a href="#9d3a2675e58065df81492d9e1b44da989373da0b">
src/beast/app/beauti/Beauti.java
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<li class="file-stats">
<a href="#f2a60d6bb0c8718b33201ab5d71bda670c5e8e4e">
src/beast/app/beauti/GuessPatternDialog.java
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</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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