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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/phyx">Debian Med / phyx</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/phyx/commit/145333e6a06caa9ef51e0809959c50832c209a63">145333e6</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-15T14:14:12Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 0.999+ds</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/phyx/commit/1eef87f352edf68eec2cf5e99edf1ea288c5f940">1eef87f3</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-15T14:14:22Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Updated version 0.999+ds from 'upstream/0.999+ds'
with Debian dir 6b20306d186155a6681038a20464c79940119381</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/phyx/commit/f2c157103119b20b00dca8bbe6c64bc146e00670">f2c15710</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-15T14:19:20Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version (adapted patches)
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/phyx/commit/bdb08d497964e1970ecd5fb89070995fa0a84595">bdb08d49</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-15T14:28:49Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">fix install dir
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/phyx/commit/b1aea9705e255260e90400a2fb869eb78ced4ae2">b1aea970</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-15T14:31:35Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
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<li class="file-stats">
<a href="#a5cc2925ca8258af241be7e5b0381edf30266302">
.gitignore
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<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#0e851bd9762dc8b6b479bde9cdff0e089eb7d986">
debian/patches/link_lnlopt.patch
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<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<li class="file-stats">
<a href="#db79865174a7f276c3c8b827cb49c919aa6a998d">
doc/Phyxed_Manual.aux
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<li class="file-stats">
<a href="#d17f882d52d32961fe965bd57efbbbf644fc179b">
<span class="deleted-file">
−
doc/Phyxed_Manual.log
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<li class="file-stats">
<a href="#aff696390bd4f8ba76275ac3ba3c0e1c13596dcd">
doc/Phyxed_Manual.out
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<li class="file-stats">
<a href="#391a65da1ec1c880d4c1b7b3f5b5d11ab6e216aa">
doc/Phyxed_Manual.pdf
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doc/Phyxed_Manual.synctex.gz
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<a href="#4d5709a5ba0c8c0597083ffde0707cc40bf4cf09">
doc/Phyxed_Manual.tex
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<a href="#b56564f8652878eb5c90411248c1cb65e3ab1010">
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example_files/pxrmk_example/knuckle_tree.tre
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<a href="#9c57ff8570899ae9caf862e5ba76916f8f4d72f5">
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example_files/pxseqgen_example/goo.fa
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example_files/pxssort_example/Codon.fa
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<a href="#522cecd6d0e04d2a4021d972eaf50fd3e4585287">
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example_files/pxsstat_example/Bollback_2002_MBE.fa
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<a href="#49df23e069b78a534b14d2841918824dddc91a6b">
src/Makefile.in
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src/README
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<a href="#c51244d9bc8e3f513f245f454eb0f4527249a605">
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src/TEST/Bollback_2002_MBE.fa
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<a href="#25847478670365562d64815e0ce082169dbb301d">
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src/TEST/collapse.tre
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<a href="#f66ebf3bc4adca45eb9581c7d1a4025d11bf3163">
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src/TEST/collapse_integer.tre
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<a href="#257b1bb9c31cfaf0d223dd3459036d99bda22f90">
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src/TEST/knuckle_tree.tre
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<a href="#84673b4b250ec3be62e041d731083a9277c7d115">
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src/TEST/un_aln_nuc.fa
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<li class="file-stats">
<a href="#1f57d39aff14d15fb26bf1f2e30128a8a62d6525">
src/aa2cdn.cpp
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<li class="file-stats">
<a href="#240f9cf095f6d1468e10aa164e2c0938ef0294a8">
src/aa2cdn.h
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<a href="#d9900b1ffb79e088f0dbc11b17c66d7382796aef">
src/bd_fit.cpp
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<a href="#d1985de241d52d76ccd5957e283929a083d77f9c">
src/bd_fit.h
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src/clean_tree.cpp
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<a href="#7b4b9070ed984030690cd31a5e38e6a21ca1ce7a">
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src/clean_tree.h
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src/collapse_tree.cpp
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src/collapse_tree.h
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<h5>The diff was not included because it is too large.</h5>
</div>
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—
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<a href="https://salsa.debian.org/med-team/phyx/compare/09ddc84098b1894368f5cc12673bc21be001799a...b1aea9705e255260e90400a2fb869eb78ced4ae2">View it on GitLab</a>.
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