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GitLab
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<h3>
Andreas Tille pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/phyx">Debian Med / phyx</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/phyx/commit/145333e6a06caa9ef51e0809959c50832c209a63">145333e6</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-15T14:14:12Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 0.999+ds</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#a5cc2925ca8258af241be7e5b0381edf30266302">
.gitignore
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#db79865174a7f276c3c8b827cb49c919aa6a998d">
doc/Phyxed_Manual.aux
</a>
</li>
<li class="file-stats">
<a href="#d17f882d52d32961fe965bd57efbbbf644fc179b">
<span class="deleted-file">

doc/Phyxed_Manual.log
</span>
</a>
</li>
<li class="file-stats">
<a href="#aff696390bd4f8ba76275ac3ba3c0e1c13596dcd">
doc/Phyxed_Manual.out
</a>
</li>
<li class="file-stats">
<a href="#391a65da1ec1c880d4c1b7b3f5b5d11ab6e216aa">
doc/Phyxed_Manual.pdf
</a>
</li>
<li class="file-stats">
<a href="#169d8517a3266cc7ce6246a30ceccb3164b10a9d">
<span class="deleted-file">

doc/Phyxed_Manual.synctex.gz
</span>
</a>
</li>
<li class="file-stats">
<a href="#4d5709a5ba0c8c0597083ffde0707cc40bf4cf09">
doc/Phyxed_Manual.tex
</a>
</li>
<li class="file-stats">
<a href="#b56564f8652878eb5c90411248c1cb65e3ab1010">
<span class="new-file">
+
example_files/pxrmk_example/knuckle_tree.tre
</span>
</a>
</li>
<li class="file-stats">
<a href="#9c57ff8570899ae9caf862e5ba76916f8f4d72f5">
<span class="new-file">
+
example_files/pxseqgen_example/goo.fa
</span>
</a>
</li>
<li class="file-stats">
<a href="#27958ab81a75cc94a7249512918f70c7d34dd8a1">
<span class="new-file">
+
example_files/pxssort_example/Codon.fa
</span>
</a>
</li>
<li class="file-stats">
<a href="#522cecd6d0e04d2a4021d972eaf50fd3e4585287">
<span class="new-file">
+
example_files/pxsstat_example/Bollback_2002_MBE.fa
</span>
</a>
</li>
<li class="file-stats">
<a href="#49df23e069b78a534b14d2841918824dddc91a6b">
src/Makefile.in
</a>
</li>
<li class="file-stats">
<a href="#d59cf7ec7bdeaa17fbf176dad76b954594d92e53">
<span class="deleted-file">

src/README
</span>
</a>
</li>
<li class="file-stats">
<a href="#c51244d9bc8e3f513f245f454eb0f4527249a605">
<span class="new-file">
+
src/TEST/Bollback_2002_MBE.fa
</span>
</a>
</li>
<li class="file-stats">
<a href="#25847478670365562d64815e0ce082169dbb301d">
<span class="new-file">
+
src/TEST/collapse.tre
</span>
</a>
</li>
<li class="file-stats">
<a href="#f66ebf3bc4adca45eb9581c7d1a4025d11bf3163">
<span class="new-file">
+
src/TEST/collapse_integer.tre
</span>
</a>
</li>
<li class="file-stats">
<a href="#257b1bb9c31cfaf0d223dd3459036d99bda22f90">
<span class="new-file">
+
src/TEST/knuckle_tree.tre
</span>
</a>
</li>
<li class="file-stats">
<a href="#84673b4b250ec3be62e041d731083a9277c7d115">
<span class="new-file">
+
src/TEST/un_aln_nuc.fa
</span>
</a>
</li>
<li class="file-stats">
<a href="#1f57d39aff14d15fb26bf1f2e30128a8a62d6525">
src/aa2cdn.cpp
</a>
</li>
<li class="file-stats">
<a href="#240f9cf095f6d1468e10aa164e2c0938ef0294a8">
src/aa2cdn.h
</a>
</li>
<li class="file-stats">
<a href="#d9900b1ffb79e088f0dbc11b17c66d7382796aef">
src/bd_fit.cpp
</a>
</li>
<li class="file-stats">
<a href="#d1985de241d52d76ccd5957e283929a083d77f9c">
src/bd_fit.h
</a>
</li>
<li class="file-stats">
<a href="#7abcf1423579cf217c950ed4c4158af48abebf6e">
<span class="new-file">
+
src/clean_tree.cpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#7b4b9070ed984030690cd31a5e38e6a21ca1ce7a">
<span class="new-file">
+
src/clean_tree.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#a8234044247d06c1887064a9faff36194cfccd62">
<span class="new-file">
+
src/collapse_tree.cpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#b2caabc1e26c329c5e6b9b2f9be4989a8574a16e">
<span class="new-file">
+
src/collapse_tree.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#2b75ef513573ea9b24d6f4e052725f9bc37bbafb">
src/comp_test.cpp
</a>
</li>
<li class="file-stats">
<a href="#48bed7fc5f59486bae1f44fc24674c5bbf19dd57">
src/concat.cpp
</a>
</li>
<li class="file-stats">
<a href="#87b2397b7dfffb55d2b0e6187cf1fe8ac1908ece">
src/configure
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>

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