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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/spades">Debian Med / spades</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/spades/commit/67452d60c12456078ee95292a51ff0a20a3a3810">67452d60</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-16T18:45:31Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 3.13.0+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/spades/commit/827aee0c4845d540eb22f4fccaae884141795965">827aee0c</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-16T18:45:36Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/3.13.0+dfsg'
Update to upstream version '3.13.0+dfsg'
with Debian dir 0768d131941f4e8144c7690f47cd52076e696ede</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/spades/commit/c2d2816c257f7a2ae1fceceb41c32adb382291a3">c2d2816c</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-16T18:45:36Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/spades/commit/29f8a29496f82c995a2af656bffe7e469c0a9b65">29f8a294</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-16T18:59:27Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Adapt patches
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/spades/commit/f15cc256f50b639a8b50fac0cd5d7578aa0d73f5">f15cc256</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-16T19:45:06Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upstream has removed dipspades
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/spades/commit/52e4cb3de93aa8a90117844c2c2e561156d7c78a">52e4cb3d</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-16T20:05:06Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Remove some more dipspades references
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/spades/commit/80a7ae0f6c71e7371b6d083e2cbf44a833cfd260">80a7ae0f</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-16T20:07:33Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Really remove all dipspades references
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#0398ccd0f49298b10a3d76a47800d2ebecd49859">
LICENSE
</a>
</li>
<li class="file-stats">
<a href="#69e27356ef629022720d868ab0c0e3394775b6c1">
<span class="deleted-file">
−
README
</span>
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
manual.md
→
README.md
</a>
</li>
<li class="file-stats">
<a href="#b33892fbddeffc3368077b4904ad0b3d562a7312">
VERSION
</a>
</li>
<li class="file-stats">
<a href="#f6af800d7670da9639f06763e56dc4530a8c687f">
changelog.html
</a>
</li>
<li class="file-stats">
<a href="#98081b75e2c0955bf73bf13d1e8a559d248b08e3">
<span class="deleted-file">
−
configs/debruijn/diploid_mode.info
</span>
</a>
</li>
<li class="file-stats">
<a href="#ee4b3c65522d1660b181ea3973a66e41fff7f31b">
configs/debruijn/log.properties
</a>
</li>
<li class="file-stats">
<a href="#af10b168248fe0e0d2f07e3fa1178e813dc73d2d">
<span class="deleted-file">
−
configs/dipspades/config.info
</span>
</a>
</li>
<li class="file-stats">
<a href="#2d1991f5a31e5e946dca93aafda030b1ef01d8ac">
<span class="deleted-file">
−
configs/dipspades/log.properties
</span>
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#ebcf9854ee19af4b7bf8405b283789c18769680f">
debian/createmanpages
</a>
</li>
<li class="file-stats">
<a href="#6c66847f014b4856124410c3e7a54122fdb192e8">
<span class="deleted-file">
−
debian/doc-base.dipspades
</span>
</a>
</li>
<li class="file-stats">
<a href="#3a5a7cdb36d3ebf45777d0bc382dd46aa7a18f32">
debian/docs
</a>
</li>
<li class="file-stats">
<a href="#8349ebd0c596ef9478eb284b6a482b10861b7531">
debian/links
</a>
</li>
<li class="file-stats">
<a href="#c174a50e92dc397b312c0971282ae2e034fca374">
<span class="deleted-file">
−
debian/man_src/dipspades.1.adoc
</span>
</a>
</li>
<li class="file-stats">
<a href="#b850218084d2a2f6788f48538ed437a42bdc7726">
debian/patches/0003_accept-system-bwa.patch
</a>
</li>
<li class="file-stats">
<a href="#5d723bb5166cdf170b56de7ec454654f7ab43e06">
debian/patches/0101_cmake_ignore_removed_python-yaml.patch
</a>
</li>
<li class="file-stats">
<a href="#8620fb8a66b781fc2799199db8ec4efb0e169454">
debian/patches/0111_use_full_config_dirs.patch
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#e4c19aed51618bf0c7ebd03189c67e422f84d4eb">
debian/patches/spelling
</a>
</li>
<li class="file-stats">
<a href="#0dd4c107b387eda3b2a45090dc061b209bd1d3a1">
<span class="deleted-file">
−
debian/patches/use-debian-packaged-bamtools.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
<li class="file-stats">
<a href="#e6baa26057cc9726f078b05b3fda61c3037a61ec">
debian/tests/run-upstreams-tests
</a>
</li>
<li class="file-stats">
<a href="#7a916a37798aa139850eb13cd07469c6a90075db">
<span class="deleted-file">
−
dipspades.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#9793548d7ecd4a4ca17c7098d005673a052f6702">
<span class="deleted-file">
−
dipspades_manual.html
</span>
</a>
</li>
<li class="file-stats">
<a href="#5a79191eb34f2344aeaf442cf1a0ffec5f982e35">
ext/include/bwa/bntseq.h
</a>
</li>
<li class="file-stats">
<a href="#a3ff6d4b1ea1d971ca732b610f09b94466f3e53d">
ext/include/bwa/bwa.h
</a>
</li>
<li class="file-stats">
<a href="#e3b69b6c79f990f2456c079508c673f938ce7e11">
ext/include/bwa/bwamem.h
</a>
</li>
<li class="file-stats">
<a href="#0ac7fc2b033f95a5f2d15af6fb7c08d1212ddeec">
<span class="new-file">
+
ext/include/bwa/rle.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#38af15c586e9f873f5329e9889ec3d963beae7e4">
<span class="new-file">
+
ext/include/bwa/rope.h
</span>
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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