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<h3>
Steffen Möller pushed to branch master
at <a href="https://salsa.debian.org/med-team/python-bx">Debian Med / python-bx</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-bx/commit/95529bf4674b37eda4df0a4c10c7390c8c0a5017">95529bf4</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2018-06-12T05:52:57Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">lintian overrides for .py suffix in /usr/bin
Those are kept for better compatibility with external
scripts and the additional binaries that there are to come.
</pre>
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<h4>5 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#f168b81935360ddcf2dd0f2d4b98b8603829060f">
debian/README.Debian
</a>
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
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<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
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<li class="file-stats">
<a href="#7ab752794ab93ad787b0758169191e19c77519ae">
<span class="new-file">
+
debian/python-bx-tools.lintian-overrides
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<li class="file-stats">
<a href="#f449a50306e2f0ae20cbe1e9ae924e403186dcd3">
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+
debian/python3-bx-tools.lintian-overrides
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<h4>Changes:</h4>
<li id="f168b81935360ddcf2dd0f2d4b98b8603829060f">
<a href="https://salsa.debian.org/med-team/python-bx/commit/95529bf4674b37eda4df0a4c10c7390c8c0a5017#f168b81935360ddcf2dd0f2d4b98b8603829060f"><strong>debian/README.Debian</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">python-bx for Debian</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">--------------------</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext">The situation is somewhat unfortunate in that both python2 and python3 occupy the same location in /usr/bin. The -tools packages separate those binaries from the modules.</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">The situation is somewhat unfortunate in that both python2 and python3</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">occupy the same location in /usr/bin. The -tools packages separate those</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">binaries from the modules.</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext">The language suffix ".py" was left for the time being for compatibility with the installation of the same on other distributions and wary of reverse dependencies.</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">The language suffix ".py" was left for the time being for compatibility</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext">with the installation of the same on other distributions and wary of</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext">reverse dependencies.</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext">Man pages are not provided. The executables offer an answer to --help</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext">to explain options but are silent about the overall purpose of the</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext">respective tool. This is why at this point there are no help2man-generated</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext">pages. The lintian warnings are not overridden as a reminder to contribute</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext">the missing self-description to upstream.</span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext">-- </span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> Steffen Moeller <moeller@debian.org> Sat, 14 Jan 2017 10:43:03 +0100</span></pre>
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<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/python-bx/commit/95529bf4674b37eda4df0a4c10c7390c8c0a5017#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">python-bx (0.8.1-<span class="idiff left right">1</span>) unstable; urgency=low</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">python-bx (0.8.1-<span class="idiff left right">2</span>) unstable; urgency=low</span>
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext"> * New upstream version.</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> * Initial release (Closes: #851242)</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * Lintian-overrides for .py suffix for executables</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> * Reformatting of debian/{README.Debian,copyright}</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> -- Steffen Moeller <moeller@debian.org> Tue, 12 Jun 2018 07:43:51 +0200</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext">python-bx (0.8.1-1) UNRELEASED; urgency=low</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> * New upstream version.</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> * Policy compliance with 4.1.4.</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> -- Steffen Moeller <moeller@debian.org> Mon, 11 Jun 2018 00:33:54 +0200</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext">python-bx (0.7.4-1) <span class="idiff left right">unstable</span>; urgency=low</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext">python-bx (0.7.4-1) <span class="idiff left right">UNRELEASED</span>; urgency=low</span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> * Added Michael and Steffen as uploaders</span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> * Removing generated files from source tree in debian/copyright</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -15,7 +22,7 @@ python-bx (0.7.4-1) unstable; urgency=low</td>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> -- Steffen Moeller <moeller@debian.org> Fri, 13 Jan 2017 13:25:31 +0100</span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext">python-bx (0.7.2+20150623-1) <span class="idiff left right">unstable</span>; urgency=low</span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext">python-bx (0.7.2+20150623-1) <span class="idiff left right">UNRELEASED</span>; urgency=low</span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> * Initial packaging.</span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"> * debian/watch added by Steffen</span>
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<a href="https://salsa.debian.org/med-team/python-bx/commit/95529bf4674b37eda4df0a4c10c7390c8c0a5017#adb7f75f79e3bb85eb62912a2904c5d24af878fb"><strong>debian/copyright</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -76,7 +76,7 @@ License: AFL-2.1</td>
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<pre style="margin: 0;"> <span id="LC76" class="line" lang="plaintext"> notice for the Original Work:</span>
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<pre style="margin: 0;"> <span id="LC77" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;"> <span id="LC78" class="line" lang="plaintext"> Licensed under the Academic Free License version 2.1</span>
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<pre style="margin: 0;">-<span id="LC79" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC79" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;"> <span id="LC80" class="line" lang="plaintext"> 1) Grant of Copyright License. Licensor hereby grants You a</span>
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<pre style="margin: 0;"> <span id="LC81" class="line" lang="plaintext"> world-wide, royalty-free, non-exclusive, perpetual, sublicenseable</span>
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<pre style="margin: 0;"> <span id="LC82" class="line" lang="plaintext"> license to do the following:</span>
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<a href="https://salsa.debian.org/med-team/python-bx/commit/95529bf4674b37eda4df0a4c10c7390c8c0a5017#7ab752794ab93ad787b0758169191e19c77519ae"><strong>debian/python-bx-tools.lintian-overrides</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext"># Not fiddling with .py endings because of reverse-dependencies expected from toil</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"># We shall revisit this decision once all packages for toil are in the distribution</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"># and we have learned more about how bx is used in the community in 3rd party scripts.</span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/aggregate_scores_in_intervals.py</span>
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5
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/align_print_template.py</span>
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6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/axt_extract_ranges.py</span>
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7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/axt_to_fasta.py</span>
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8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/axt_to_lav.py</span>
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9
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/axt_to_maf.py</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/bed_bigwig_profile.py</span>
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11
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/bed_build_windows.py</span>
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12
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/bed_complement.py</span>
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13
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/bed_count_by_interval.py</span>
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14
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/bed_count_overlapping.py</span>
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15
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/bed_coverage.py</span>
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16
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/bed_coverage_by_interval.py</span>
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17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/bed_diff_basewise_summary.py</span>
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18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/bed_extend_to.py</span>
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/bed_intersect.py</span>
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20
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/bed_intersect_basewise.py</span>
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21
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/bed_merge_overlapping.py</span>
</pre>
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22
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/bed_rand_intersect.py</span>
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23
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/bed_subtract_basewise.py</span>
</pre>
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24
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/bnMapper.py</span>
</pre>
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25
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/div_snp_table_chr.py</span>
</pre>
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26
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/find_in_sorted_file.py</span>
</pre>
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27
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/gene_fourfold_sites.py</span>
</pre>
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28
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/get_scores_in_intervals.py</span>
</pre>
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29
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/int_seqs_to_char_strings.py</span>
</pre>
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30
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/interval_count_intersections.py</span>
</pre>
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31
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/interval_join.py</span>
</pre>
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32
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/lav_to_axt.py</span>
</pre>
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33
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/lav_to_maf.py</span>
</pre>
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34
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/line_select.py</span>
</pre>
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35
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/lzop_build_offset_table.py</span>
</pre>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/mMK_bitset.py</span>
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37
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/maf_build_index.py</span>
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38
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/maf_chop.py</span>
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39
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/maf_chunk.py</span>
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40
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/maf_col_counts.py</span>
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41
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/maf_col_counts_all.py</span>
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42
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/maf_count.py</span>
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43
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/maf_covered_ranges.py</span>
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44
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/maf_covered_regions.py</span>
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45
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/maf_div_sites.py</span>
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46
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/maf_drop_overlapping.py</span>
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47
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/maf_extract_chrom_ranges.py</span>
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48
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/maf_extract_ranges.py</span>
</pre>
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49
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/maf_extract_ranges_indexed.py</span>
</pre>
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50
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/maf_filter.py</span>
</pre>
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51
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/maf_filter_max_wc.py</span>
</pre>
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52
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/maf_gap_frequency.py</span>
</pre>
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53
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/maf_gc_content.py</span>
</pre>
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54
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/maf_interval_alignibility.py</span>
</pre>
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55
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/maf_limit_to_species.py</span>
</pre>
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56
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/maf_mapping_word_frequency.py</span>
</pre>
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57
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/maf_mask_cpg.py</span>
</pre>
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58
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/maf_mean_length_ungapped_piece.py</span>
</pre>
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59
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/maf_percent_columns_matching.py</span>
</pre>
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60
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/maf_percent_identity.py</span>
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61
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/maf_print_chroms.py</span>
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62
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/maf_print_scores.py</span>
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63
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/maf_randomize.py</span>
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64
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/maf_region_coverage_by_src.py</span>
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65
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/maf_select.py</span>
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66
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/maf_shuffle_columns.py</span>
</pre>
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67
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/maf_species_in_all_files.py</span>
</pre>
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68
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/maf_split_by_src.py</span>
</pre>
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69
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/maf_thread_for_species.py</span>
</pre>
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70
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<pre style="margin: 0;">+<span id="LC70" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/maf_tile.py</span>
</pre>
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71
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<pre style="margin: 0;">+<span id="LC71" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/maf_tile_2.py</span>
</pre>
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72
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<pre style="margin: 0;">+<span id="LC72" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/maf_tile_2bit.py</span>
</pre>
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73
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<pre style="margin: 0;">+<span id="LC73" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/maf_to_axt.py</span>
</pre>
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74
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<pre style="margin: 0;">+<span id="LC74" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/maf_to_concat_fasta.py</span>
</pre>
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75
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<pre style="margin: 0;">+<span id="LC75" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/maf_to_fasta.py</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="76" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
76
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<pre style="margin: 0;">+<span id="LC76" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/maf_to_int_seqs.py</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="77" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
77
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<pre style="margin: 0;">+<span id="LC77" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/maf_translate_chars.py</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="78" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
78
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/maf_truncate.py</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="79" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
79
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<pre style="margin: 0;">+<span id="LC79" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/maf_word_frequency.py</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="80" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
80
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<pre style="margin: 0;">+<span id="LC80" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/mask_quality.py</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="81" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
81
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<pre style="margin: 0;">+<span id="LC81" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/nib_chrom_intervals_to_fasta.py</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="82" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
82
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<pre style="margin: 0;">+<span id="LC82" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/nib_intervals_to_fasta.py</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="83" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
83
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/nib_length.py</span>
</pre>
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84
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<pre style="margin: 0;">+<span id="LC84" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/one_field_per_line.py</span>
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85
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<pre style="margin: 0;">+<span id="LC85" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/out_to_chain.py</span>
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86
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<pre style="margin: 0;">+<span id="LC86" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/prefix_lines.py</span>
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87
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<pre style="margin: 0;">+<span id="LC87" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/pretty_table.py</span>
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88
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<pre style="margin: 0;">+<span id="LC88" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/qv_to_bqv.py</span>
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89
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<pre style="margin: 0;">+<span id="LC89" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/random_lines.py</span>
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90
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<pre style="margin: 0;">+<span id="LC90" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/table_add_column.py</span>
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91
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<pre style="margin: 0;">+<span id="LC91" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/table_filter.py</span>
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92
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<pre style="margin: 0;">+<span id="LC92" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/tfloc_summary.py</span>
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93
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<pre style="margin: 0;">+<span id="LC93" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/ucsc_gene_table_to_intervals.py</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="94" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
94
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<pre style="margin: 0;">+<span id="LC94" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/wiggle_to_array_tree.py</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="95" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
95
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<pre style="margin: 0;">+<span id="LC95" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/wiggle_to_binned_array.py</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="96" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
96
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<pre style="margin: 0;">+<span id="LC96" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/wiggle_to_chr_binned_array.py</span>
</pre>
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97
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<pre style="margin: 0;">+<span id="LC97" class="line" lang="plaintext">python-bx-tools: script-with-language-extension usr/bin/wiggle_to_simple.py</span></pre>
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<li id="f449a50306e2f0ae20cbe1e9ae924e403186dcd3">
<a href="https://salsa.debian.org/med-team/python-bx/commit/95529bf4674b37eda4df0a4c10c7390c8c0a5017#f449a50306e2f0ae20cbe1e9ae924e403186dcd3"><strong>debian/python3-bx-tools.lintian-overrides</strong></a>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext"># Not fiddling with .py endings because of reverse-dependencies expected from toil</span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"># We shall revisit this decision once all packages for toil are in the distribution</span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"># and we have learned more about how bx is used in the community in 3rd party scripts.</span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/aggregate_scores_in_intervals.py</span>
</pre>
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5
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/align_print_template.py</span>
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6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/axt_extract_ranges.py</span>
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7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/axt_to_fasta.py</span>
</pre>
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8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/axt_to_lav.py</span>
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9
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/axt_to_maf.py</span>
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10
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/bed_bigwig_profile.py</span>
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11
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/bed_build_windows.py</span>
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12
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/bed_complement.py</span>
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13
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/bed_count_by_interval.py</span>
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14
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/bed_count_overlapping.py</span>
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15
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/bed_coverage.py</span>
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16
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/bed_coverage_by_interval.py</span>
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17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/bed_diff_basewise_summary.py</span>
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18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/bed_extend_to.py</span>
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/bed_intersect.py</span>
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20
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/bed_intersect_basewise.py</span>
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21
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/bed_merge_overlapping.py</span>
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22
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/bed_rand_intersect.py</span>
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23
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/bed_subtract_basewise.py</span>
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24
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/bnMapper.py</span>
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25
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/div_snp_table_chr.py</span>
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26
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/find_in_sorted_file.py</span>
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27
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/gene_fourfold_sites.py</span>
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28
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/get_scores_in_intervals.py</span>
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29
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/int_seqs_to_char_strings.py</span>
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30
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/interval_count_intersections.py</span>
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31
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/interval_join.py</span>
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32
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/lav_to_axt.py</span>
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33
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/lav_to_maf.py</span>
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34
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/line_select.py</span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/lzop_build_offset_table.py</span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/mMK_bitset.py</span>
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37
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/maf_build_index.py</span>
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38
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/maf_chop.py</span>
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39
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/maf_chunk.py</span>
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40
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/maf_col_counts.py</span>
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41
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/maf_col_counts_all.py</span>
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42
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/maf_count.py</span>
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43
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/maf_covered_ranges.py</span>
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44
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/maf_covered_regions.py</span>
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45
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/maf_div_sites.py</span>
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46
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/maf_drop_overlapping.py</span>
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47
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/maf_extract_chrom_ranges.py</span>
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48
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/maf_extract_ranges.py</span>
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49
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/maf_extract_ranges_indexed.py</span>
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50
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/maf_filter.py</span>
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51
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/maf_filter_max_wc.py</span>
</pre>
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52
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/maf_gap_frequency.py</span>
</pre>
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53
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/maf_gc_content.py</span>
</pre>
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54
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/maf_interval_alignibility.py</span>
</pre>
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55
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/maf_limit_to_species.py</span>
</pre>
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56
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/maf_mapping_word_frequency.py</span>
</pre>
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57
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/maf_mask_cpg.py</span>
</pre>
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58
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/maf_mean_length_ungapped_piece.py</span>
</pre>
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59
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/maf_percent_columns_matching.py</span>
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60
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/maf_percent_identity.py</span>
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61
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/maf_print_chroms.py</span>
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62
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/maf_print_scores.py</span>
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63
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/maf_randomize.py</span>
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64
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/maf_region_coverage_by_src.py</span>
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65
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/maf_select.py</span>
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66
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/maf_shuffle_columns.py</span>
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67
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/maf_species_in_all_files.py</span>
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68
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/maf_split_by_src.py</span>
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69
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/maf_thread_for_species.py</span>
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70
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<pre style="margin: 0;">+<span id="LC70" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/maf_tile.py</span>
</pre>
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71
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<pre style="margin: 0;">+<span id="LC71" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/maf_tile_2.py</span>
</pre>
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72
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<pre style="margin: 0;">+<span id="LC72" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/maf_tile_2bit.py</span>
</pre>
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73
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<pre style="margin: 0;">+<span id="LC73" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/maf_to_axt.py</span>
</pre>
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74
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<pre style="margin: 0;">+<span id="LC74" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/maf_to_concat_fasta.py</span>
</pre>
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75
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<pre style="margin: 0;">+<span id="LC75" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/maf_to_fasta.py</span>
</pre>
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76
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<pre style="margin: 0;">+<span id="LC76" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/maf_to_int_seqs.py</span>
</pre>
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77
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<pre style="margin: 0;">+<span id="LC77" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/maf_translate_chars.py</span>
</pre>
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78
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/maf_truncate.py</span>
</pre>
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</tr>
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79
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<pre style="margin: 0;">+<span id="LC79" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/maf_word_frequency.py</span>
</pre>
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80
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<pre style="margin: 0;">+<span id="LC80" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/mask_quality.py</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="81" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
81
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<pre style="margin: 0;">+<span id="LC81" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/nib_chrom_intervals_to_fasta.py</span>
</pre>
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82
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<pre style="margin: 0;">+<span id="LC82" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/nib_intervals_to_fasta.py</span>
</pre>
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83
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/nib_length.py</span>
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84
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<pre style="margin: 0;">+<span id="LC84" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/one_field_per_line.py</span>
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85
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<pre style="margin: 0;">+<span id="LC85" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/out_to_chain.py</span>
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86
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<pre style="margin: 0;">+<span id="LC86" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/prefix_lines.py</span>
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<td class="diff-line-num new new_line" data-linenumber="87" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
87
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<pre style="margin: 0;">+<span id="LC87" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/pretty_table.py</span>
</pre>
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88
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<pre style="margin: 0;">+<span id="LC88" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/qv_to_bqv.py</span>
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<td class="diff-line-num new new_line" data-linenumber="89" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
89
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<pre style="margin: 0;">+<span id="LC89" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/random_lines.py</span>
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90
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<pre style="margin: 0;">+<span id="LC90" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/table_add_column.py</span>
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91
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<pre style="margin: 0;">+<span id="LC91" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/table_filter.py</span>
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92
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<pre style="margin: 0;">+<span id="LC92" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/tfloc_summary.py</span>
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93
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<pre style="margin: 0;">+<span id="LC93" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/ucsc_gene_table_to_intervals.py</span>
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94
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<pre style="margin: 0;">+<span id="LC94" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/wiggle_to_array_tree.py</span>
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95
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<pre style="margin: 0;">+<span id="LC95" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/wiggle_to_binned_array.py</span>
</pre>
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96
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<pre style="margin: 0;">+<span id="LC96" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/wiggle_to_chr_binned_array.py</span>
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97
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<pre style="margin: 0;">+<span id="LC97" class="line" lang="plaintext">python3-bx-tools: script-with-language-extension usr/bin/wiggle_to_simple.py</span></pre>
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