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<h3>
Diane Trout pushed to branch master
at <a href="https://salsa.debian.org/med-team/pybigwig">Debian Med / pybigwig</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/pybigwig/commit/b79107752fc196d5e7799c2ad846d5b62e99a0d1">b7910775</a></strong>
<div>
<span>by Diane Trout</span>
<i>at 2018-10-16T04:27:06Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 0.3.12</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pybigwig/commit/3b56361c95d4a8954f821488d1db05fef8e006bf">3b56361c</a></strong>
<div>
<span>by Diane Trout</span>
<i>at 2018-10-16T04:27:07Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/0.3.12'
Update to upstream version '0.3.12'
with Debian dir 58805cc424e5f9703b04d2ba657aa0f3c0fa3e35</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pybigwig/commit/7fcf0b7ad001aca1616a93d8b24c1478266b1465">7fcf0b7a</a></strong>
<div>
<span>by Diane Trout</span>
<i>at 2018-10-17T04:04:53Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream release
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pybigwig/commit/e7449b51a39546127ea4f248402eb29730c2f17e">e7449b51</a></strong>
<div>
<span>by Diane Trout</span>
<i>at 2018-10-17T04:05:17Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add python all package to autopkgtest dependencies. (Closes: #911119)
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pybigwig/commit/cf0cd9e6b193c218094e56652da8d75dd91d13cc">cf0cd9e6</a></strong>
<div>
<span>by Diane Trout</span>
<i>at 2018-10-17T04:09:02Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update Standards-Version no changes needed
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pybigwig/commit/78726b0a6f508ca8ebb9d78dd8100319496dcae4">78726b0a</a></strong>
<div>
<span>by Diane Trout</span>
<i>at 2018-10-17T04:11:06Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add vcs tags
</pre>
</li>
</ul>
<h4>8 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#7d26833a43d8865f6d9679068f6f9ee7d6e13dcf">
PKG-INFO
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
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<li class="file-stats">
<a href="#83223a554d33ba7e1888274ff8ac43adb8147ba0">
debian/tests/control
</a>
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<li class="file-stats">
<a href="#ae58b3ba4c54b6fadb279decb1690b71b8be4857">
pyBigWig.c
</a>
</li>
<li class="file-stats">
<a href="#a53acb6d60ac6a063886d0a7a1dd8f7184e6f980">
pyBigWig.h
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<li class="file-stats">
<a href="#f5d848e7beeea87ec3202f19ebf1bce809c843bd">
pyBigWigTest/test.py
</a>
</li>
<li class="file-stats">
<a href="#8e2edce0d507e1297474f25c00cae94258db38d8">
setup.py
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="7d26833a43d8865f6d9679068f6f9ee7d6e13dcf">
<a href="https://salsa.debian.org/med-team/pybigwig/compare/681380e8787e31eac99595322c89261a699d3c22...78726b0a6f508ca8ebb9d78dd8100319496dcae4#7d26833a43d8865f6d9679068f6f9ee7d6e13dcf"><strong>PKG-INFO</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Metadata-Version: <span class="idiff left right">1</span>.1</span>
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Metadata-Version: <span class="idiff left right">2</span>.1</span>
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">Name: pyBigWig</span>
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<td class="diff-line-num old old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext">Version: 0.3.1<span class="idiff left right">1</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">Version: 0.3.1<span class="idiff left right">2</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">Summary: A package for accessing bigWig files using libBigWig</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">Home-page: https://github.com/dpryan79/pyBigWig</span>
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<td class="diff-line-num old_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">Author: Devon P. Ryan</span>
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<td class="diff-line-num old_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">Author-email: ryan@ie-freiburg.mpg.de</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext">License: UNKNOWN</span>
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<td class="diff-line-num old_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
9
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">Download-URL: https://github.com/dpryan79/pyBigWig/tarball/0.3.11</span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext">Description-Content-Type: UNKNOWN</span>
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<td class="diff-line-num old_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
11
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">Description: UNKNOWN</span>
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<td class="diff-line-num old_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
12
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<td class="diff-line-num new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">Keywords: bioinformatics,bigWig,bigBed</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
13
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext">Platform: UNKNOWN</span>
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<td class="diff-line-num new old_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext">Provides-Extra: numpy input</span></pre>
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<a href="https://salsa.debian.org/med-team/pybigwig/compare/681380e8787e31eac99595322c89261a699d3c22...78726b0a6f508ca8ebb9d78dd8100319496dcae4#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">pybigwig (0.3.12-1) unstable; urgency=medium</span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * New upstream release.</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> -- Diane Trout <diane@ghic.org> Mon, 15 Oct 2018 21:30:28 -0700</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">pybigwig (0.3.11-1) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> * New upstream release.</span>
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<a href="https://salsa.debian.org/med-team/pybigwig/compare/681380e8787e31eac99595322c89261a699d3c22...78726b0a6f508ca8ebb9d78dd8100319496dcae4#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -13,7 +13,9 @@ Build-Depends: debhelper (>= 11),</td>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> python3-all-dev,</span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> python3-numpy,</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> python3-setuptools</span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext">Standards-Version: 4.1.4</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext">Standards-Version: 4.2.1</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/pybigwig.git</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/pybigwig</span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext">Section: science</span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext">Homepage: https://github.com/dpryan79/pyBigWig</span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"></span>
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<a href="https://salsa.debian.org/med-team/pybigwig/compare/681380e8787e31eac99595322c89261a699d3c22...78726b0a6f508ca8ebb9d78dd8100319496dcae4#83223a554d33ba7e1888274ff8ac43adb8147ba0"><strong>debian/tests/control</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4,7 +4,7 @@ Test-Command: set -e</td>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> ; $py test.py</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"> ; cd ..</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"> ; done</span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext">Depends: python-pybigwig</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">Depends: python-pybigwig<span class="idiff left right">, python-all</span></span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">Test-Command: set -e</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> ; for py in $(py3versions -r 2>/dev/null)</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -12,4 +12,4 @@ Test-Command: set -e</td>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> ; $py test.py</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> ; cd ..</span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> ; done</span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext">Depends: python3-pybigwig</span></pre>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext">Depends: python3-pybigwig<span class="idiff left right">, python3-all</span></span></pre>
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<li id="ae58b3ba4c54b6fadb279decb1690b71b8be4857">
<a href="https://salsa.debian.org/med-team/pybigwig/compare/681380e8787e31eac99595322c89261a699d3c22...78726b0a6f508ca8ebb9d78dd8100319496dcae4#ae58b3ba4c54b6fadb279decb1690b71b8be4857"><strong>pyBigWig.c</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -7,6 +7,7 @@</td>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include "numpy/npy_common.h"</span></span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include "numpy/halffloat.h"</span></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include "numpy/ndarrayobject.h"</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include "numpy/arrayscalars.h"</span></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="c"></span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="c"><span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">lsize</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">NPY_SIZEOF_LONG</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="c"></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -79,6 +80,52 @@ error:</td>
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<pre style="margin: 0;"> <span id="LC80" class="line" lang="c"> <span class="k" style="font-weight: 600;">return</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC81" class="line" lang="c"><span class="p">};</span></span>
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<pre style="margin: 0;"> <span id="LC82" class="line" lang="c"></span>
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="c"><span class="kt" style="color: #458; font-weight: 600;">long</span> <span class="nf" style="color: #900; font-weight: 600;">getNumpyL</span><span class="p">(</span><span class="n" style="color: #333;">PyObject</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">obj</span><span class="p">)</span> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC84" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">short</span> <span class="n" style="color: #333;">s</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC85" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">i</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC86" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">long</span> <span class="n" style="color: #333;">l</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC87" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">long</span> <span class="kt" style="color: #458; font-weight: 600;">long</span> <span class="n" style="color: #333;">ll</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC88" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">short</span> <span class="n" style="color: #333;">us</span><span class="p">;</span></span>
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89
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<pre style="margin: 0;">+<span id="LC89" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">ui</span><span class="p">;</span></span>
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90
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<pre style="margin: 0;">+<span id="LC90" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">long</span> <span class="n" style="color: #333;">ul</span><span class="p">;</span></span>
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91
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<pre style="margin: 0;">+<span id="LC91" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">long</span> <span class="kt" style="color: #458; font-weight: 600;">long</span> <span class="n" style="color: #333;">ull</span><span class="p">;</span></span>
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92
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<pre style="margin: 0;">+<span id="LC92" class="line" lang="c"> </span>
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93
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<pre style="margin: 0;">+<span id="LC93" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">PyArray_IsIntegerScalar</span><span class="p">(</span><span class="n" style="color: #333;">obj</span><span class="p">))</span> <span class="p">{</span></span>
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94
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<pre style="margin: 0;">+<span id="LC94" class="line" lang="c"> <span class="n" style="color: #333;">PyErr_SetString</span><span class="p">(</span><span class="n" style="color: #333;">PyExc_RuntimeError</span><span class="p">,</span> <span class="s" style="color: #d14;">"Received non-Integer scalar type for conversion to long!</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>
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95
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<pre style="margin: 0;">+<span id="LC95" class="line" lang="c"> <span class="k" style="font-weight: 600;">return</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span></span>
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96
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<pre style="margin: 0;">+<span id="LC96" class="line" lang="c"> <span class="p">}</span></span>
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97
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<pre style="margin: 0;">+<span id="LC97" class="line" lang="c"></span>
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98
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<pre style="margin: 0;">+<span id="LC98" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="n" style="color: #333;">PyArray_IsScalar</span><span class="p">(</span><span class="n" style="color: #333;">obj</span><span class="p">,</span> <span class="n" style="color: #333;">Short</span><span class="p">))</span> <span class="p">{</span></span>
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99
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<pre style="margin: 0;">+<span id="LC99" class="line" lang="c"> <span class="n" style="color: #333;">s</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">((</span><span class="n" style="color: #333;">PyShortScalarObject</span> <span class="o" style="font-weight: 600;">*</span><span class="p">)</span><span class="n" style="color: #333;">obj</span><span class="p">)</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">obval</span><span class="p">;</span></span>
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100
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<pre style="margin: 0;">+<span id="LC100" class="line" lang="c"> <span class="n" style="color: #333;">l</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">s</span><span class="p">;</span></span>
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101
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<pre style="margin: 0;">+<span id="LC101" class="line" lang="c"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="n" style="color: #333;">PyArray_IsScalar</span><span class="p">(</span><span class="n" style="color: #333;">obj</span><span class="p">,</span> <span class="n" style="color: #333;">Int</span><span class="p">))</span> <span class="p">{</span></span>
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102
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<pre style="margin: 0;">+<span id="LC102" class="line" lang="c"> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">((</span><span class="n" style="color: #333;">PyLongScalarObject</span> <span class="o" style="font-weight: 600;">*</span><span class="p">)</span><span class="n" style="color: #333;">obj</span><span class="p">)</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">obval</span><span class="p">;</span></span>
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103
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<pre style="margin: 0;">+<span id="LC103" class="line" lang="c"> <span class="n" style="color: #333;">l</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">i</span><span class="p">;</span></span>
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104
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<pre style="margin: 0;">+<span id="LC104" class="line" lang="c"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="n" style="color: #333;">PyArray_IsScalar</span><span class="p">(</span><span class="n" style="color: #333;">obj</span><span class="p">,</span> <span class="n" style="color: #333;">Long</span><span class="p">))</span> <span class="p">{</span></span>
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105
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<pre style="margin: 0;">+<span id="LC105" class="line" lang="c"> <span class="n" style="color: #333;">l</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">((</span><span class="n" style="color: #333;">PyLongScalarObject</span> <span class="o" style="font-weight: 600;">*</span><span class="p">)</span><span class="n" style="color: #333;">obj</span><span class="p">)</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">obval</span><span class="p">;</span></span>
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106
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<pre style="margin: 0;">+<span id="LC106" class="line" lang="c"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="n" style="color: #333;">PyArray_IsScalar</span><span class="p">(</span><span class="n" style="color: #333;">obj</span><span class="p">,</span> <span class="n" style="color: #333;">LongLong</span><span class="p">))</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="107" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
107
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<pre style="margin: 0;">+<span id="LC107" class="line" lang="c"> <span class="n" style="color: #333;">ll</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">((</span><span class="n" style="color: #333;">PyLongScalarObject</span> <span class="o" style="font-weight: 600;">*</span><span class="p">)</span><span class="n" style="color: #333;">obj</span><span class="p">)</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">obval</span><span class="p">;</span></span>
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108
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<pre style="margin: 0;">+<span id="LC108" class="line" lang="c"> <span class="n" style="color: #333;">l</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">ll</span><span class="p">;</span></span>
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109
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<pre style="margin: 0;">+<span id="LC109" class="line" lang="c"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="n" style="color: #333;">PyArray_IsScalar</span><span class="p">(</span><span class="n" style="color: #333;">obj</span><span class="p">,</span> <span class="n" style="color: #333;">UShort</span><span class="p">))</span> <span class="p">{</span></span>
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110
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<pre style="margin: 0;">+<span id="LC110" class="line" lang="c"> <span class="n" style="color: #333;">us</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">((</span><span class="n" style="color: #333;">PyLongScalarObject</span> <span class="o" style="font-weight: 600;">*</span><span class="p">)</span><span class="n" style="color: #333;">obj</span><span class="p">)</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">obval</span><span class="p">;</span></span>
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111
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<pre style="margin: 0;">+<span id="LC111" class="line" lang="c"> <span class="n" style="color: #333;">l</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">us</span><span class="p">;</span></span>
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112
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<pre style="margin: 0;">+<span id="LC112" class="line" lang="c"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="n" style="color: #333;">PyArray_IsScalar</span><span class="p">(</span><span class="n" style="color: #333;">obj</span><span class="p">,</span> <span class="n" style="color: #333;">UInt</span><span class="p">))</span> <span class="p">{</span></span>
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113
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<pre style="margin: 0;">+<span id="LC113" class="line" lang="c"> <span class="n" style="color: #333;">ui</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">((</span><span class="n" style="color: #333;">PyLongScalarObject</span> <span class="o" style="font-weight: 600;">*</span><span class="p">)</span><span class="n" style="color: #333;">obj</span><span class="p">)</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">obval</span><span class="p">;</span></span>
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114
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<pre style="margin: 0;">+<span id="LC114" class="line" lang="c"> <span class="n" style="color: #333;">l</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">ui</span><span class="p">;</span></span>
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115
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<pre style="margin: 0;">+<span id="LC115" class="line" lang="c"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="n" style="color: #333;">PyArray_IsScalar</span><span class="p">(</span><span class="n" style="color: #333;">obj</span><span class="p">,</span> <span class="n" style="color: #333;">ULong</span><span class="p">))</span> <span class="p">{</span></span>
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116
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<pre style="margin: 0;">+<span id="LC116" class="line" lang="c"> <span class="n" style="color: #333;">ul</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">((</span><span class="n" style="color: #333;">PyLongScalarObject</span> <span class="o" style="font-weight: 600;">*</span><span class="p">)</span><span class="n" style="color: #333;">obj</span><span class="p">)</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">obval</span><span class="p">;</span></span>
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117
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<pre style="margin: 0;">+<span id="LC117" class="line" lang="c"> <span class="n" style="color: #333;">l</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">ul</span><span class="p">;</span></span>
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118
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<pre style="margin: 0;">+<span id="LC118" class="line" lang="c"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="n" style="color: #333;">PyArray_IsScalar</span><span class="p">(</span><span class="n" style="color: #333;">obj</span><span class="p">,</span> <span class="n" style="color: #333;">ULongLong</span><span class="p">))</span> <span class="p">{</span></span>
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119
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<pre style="margin: 0;">+<span id="LC119" class="line" lang="c"> <span class="n" style="color: #333;">ull</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">((</span><span class="n" style="color: #333;">PyLongScalarObject</span> <span class="o" style="font-weight: 600;">*</span><span class="p">)</span><span class="n" style="color: #333;">obj</span><span class="p">)</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">obval</span><span class="p">;</span></span>
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120
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<pre style="margin: 0;">+<span id="LC120" class="line" lang="c"> <span class="n" style="color: #333;">l</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">ull</span><span class="p">;</span></span>
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121
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<pre style="margin: 0;">+<span id="LC121" class="line" lang="c"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="p">{</span></span>
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122
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<pre style="margin: 0;">+<span id="LC122" class="line" lang="c"> <span class="n" style="color: #333;">PyErr_SetString</span><span class="p">(</span><span class="n" style="color: #333;">PyExc_RuntimeError</span><span class="p">,</span> <span class="s" style="color: #d14;">"Received unknown scalar type for conversion to long!</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>
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123
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<pre style="margin: 0;">+<span id="LC123" class="line" lang="c"> <span class="k" style="font-weight: 600;">return</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span></span>
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124
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<pre style="margin: 0;">+<span id="LC124" class="line" lang="c"> <span class="p">}</span></span>
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125
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<pre style="margin: 0;">+<span id="LC125" class="line" lang="c"></span>
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126
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<pre style="margin: 0;">+<span id="LC126" class="line" lang="c"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">l</span><span class="p">;</span></span>
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127
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<pre style="margin: 0;">+<span id="LC127" class="line" lang="c"><span class="p">}</span></span>
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128
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<pre style="margin: 0;">+<span id="LC128" class="line" lang="c"></span>
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<pre style="margin: 0;"> <span id="LC129" class="line" lang="c"><span class="c1" style="color: #998; font-style: italic;">//Raises an exception on error, which should be checked</span></span>
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130
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<pre style="margin: 0;"> <span id="LC130" class="line" lang="c"><span class="kt" style="color: #458; font-weight: 600;">float</span> <span class="nf" style="color: #900; font-weight: 600;">getNumpyF</span><span class="p">(</span><span class="n" style="color: #333;">PyArrayObject</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">obj</span><span class="p">,</span> <span class="n" style="color: #333;">Py_ssize_t</span> <span class="n" style="color: #333;">i</span><span class="p">)</span> <span class="p">{</span></span>
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84
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131
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<pre style="margin: 0;"> <span id="LC131" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">dtype</span><span class="p">;</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="324" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="371" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -324,7 +371,7 @@ static PyObject *pyBwGetStats(pyBigWigFile_t *self, PyObject *args, PyObject *kw</td>
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324
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371
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<pre style="margin: 0;"> <span id="LC371" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">long</span> <span class="n" style="color: #333;">startl</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="n" style="color: #333;">endl</span> <span class="o" style="font-weight: 600;">=</span> <span class="o" style="font-weight: 600;">-</span><span class="mi" style="color: #099;">1</span><span class="p">;</span></span>
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325
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<td class="diff-line-num new_line" data-linenumber="372" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
372
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<pre style="margin: 0;"> <span id="LC372" class="line" lang="c"> <span class="k" style="font-weight: 600;">static</span> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">kwd_list</span><span class="p">[]</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">{</span><span class="s" style="color: #d14;">"chrom"</span><span class="p">,</span> <span class="s" style="color: #d14;">"start"</span><span class="p">,</span> <span class="s" style="color: #d14;">"end"</span><span class="p">,</span> <span class="s" style="color: #d14;">"type"</span><span class="p">,</span> <span class="s" style="color: #d14;">"nBins"</span><span class="p">,</span> <span class="s" style="color: #d14;">"exact"</span><span class="p">,</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">};</span></span>
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326
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<td class="diff-line-num new_line" data-linenumber="373" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
373
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<pre style="margin: 0;"> <span id="LC373" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">chrom</span><span class="p">,</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">type</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"mean"</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="327" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
327
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<pre style="margin: 0;">-<span id="LC327" class="line" lang="c"> <span class="n" style="color: #333;">PyObject</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">ret</span><span class="p">,</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">exact</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">Py_False</span><span class="p">;</span></span>
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374
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<pre style="margin: 0;">+<span id="LC374" class="line" lang="c"> <span class="n" style="color: #333;">PyObject</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">ret</span><span class="p">,</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">exact</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">Py_False</span><span class="p"><span class="idiff left">,</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">*</span></span><span class="n" style="color: #333;"><span class="idiff">starto</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff"> </span><span class="nb" style="color: #0086b3;"><span class="idiff">NULL</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">*</span></span><span class="n" style="color: #333;"><span class="idiff">endo</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff"> </span><span class="nb" style="color: #0086b3;"><span class="idiff right">NULL</span></span><span class="p">;</span></span>
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328
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375
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<pre style="margin: 0;"> <span id="LC375" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">i</span><span class="p">,</span> <span class="n" style="color: #333;">nBins</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">1</span><span class="p">;</span></span>
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329
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376
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<pre style="margin: 0;"> <span id="LC376" class="line" lang="c"> <span class="n" style="color: #333;">errno</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="c1" style="color: #998; font-style: italic;">//In the off-chance that something elsewhere got an error and didn't clear it...</span></span>
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330
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377
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<pre style="margin: 0;"> <span id="LC377" class="line" lang="c"></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="338" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="385" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -338,7 +385,7 @@ static PyObject *pyBwGetStats(pyBigWigFile_t *self, PyObject *args, PyObject *kw</td>
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338
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385
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<pre style="margin: 0;"> <span id="LC385" class="line" lang="c"> <span class="k" style="font-weight: 600;">return</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">;</span></span>
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339
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386
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<pre style="margin: 0;"> <span id="LC386" class="line" lang="c"> <span class="p">}</span></span>
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340
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387
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<pre style="margin: 0;"> <span id="LC387" class="line" lang="c"></span>
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341
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<pre style="margin: 0;">-<span id="LC341" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">PyArg_ParseTupleAndKeywords</span><span class="p">(</span><span class="n" style="color: #333;">args</span><span class="p">,</span> <span class="n" style="color: #333;">kwds</span><span class="p">,</span> <span class="s" style="color: #d14;">"s|<span class="idiff left">kksiO"</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">kwd_list</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">&</span></span><span class="n" style="color: #333;"><span class="idiff">chrom</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">&</span></span><span class="n" style="color: #333;"><span class="idiff">startl</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">&</span></span><span class="n" style="color: #333;"><span class="idiff right">endl</span></span><span class="p">,</span> <span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">type</span><span class="p">,</span> <span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">nBins</span><span class="p">,</span> <span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">exact</span><span class="p">))</span> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC388" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">PyArg_ParseTupleAndKeywords</span><span class="p">(</span><span class="n" style="color: #333;">args</span><span class="p">,</span> <span class="n" style="color: #333;">kwds</span><span class="p">,</span> <span class="s" style="color: #d14;">"s|<span class="idiff left">OOsiO"</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">kwd_list</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">&</span></span><span class="n" style="color: #333;"><span class="idiff">chrom</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">&</span></span><span class="n" style="color: #333;"><span class="idiff">starto</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">&</span></span><span class="n" style="color: #333;"><span class="idiff right">endo</span></span><span class="p">,</span> <span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">type</span><span class="p">,</span> <span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">nBins</span><span class="p">,</span> <span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">exact</span><span class="p">))</span> <span class="p">{</span></span>
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342
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389
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<pre style="margin: 0;"> <span id="LC389" class="line" lang="c"> <span class="n" style="color: #333;">PyErr_SetString</span><span class="p">(</span><span class="n" style="color: #333;">PyExc_RuntimeError</span><span class="p">,</span> <span class="s" style="color: #d14;">"You must supply at least a chromosome!"</span><span class="p">);</span></span>
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343
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390
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<pre style="margin: 0;"> <span id="LC390" class="line" lang="c"> <span class="k" style="font-weight: 600;">return</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">;</span></span>
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344
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391
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<pre style="margin: 0;"> <span id="LC391" class="line" lang="c"> <span class="p">}</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="347" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="394" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -347,6 +394,43 @@ static PyObject *pyBwGetStats(pyBigWigFile_t *self, PyObject *args, PyObject *kw</td>
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347
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394
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<pre style="margin: 0;"> <span id="LC394" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">nBins</span><span class="p">)</span> <span class="n" style="color: #333;">nBins</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">1</span><span class="p">;</span> <span class="c1" style="color: #998; font-style: italic;">//For some reason, not specifying this overrides the default!</span></span>
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348
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395
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<pre style="margin: 0;"> <span id="LC395" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">type</span><span class="p">)</span> <span class="n" style="color: #333;">type</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"mean"</span><span class="p">;</span></span>
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349
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<td class="diff-line-num new_line" data-linenumber="396" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
396
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<pre style="margin: 0;"> <span id="LC396" class="line" lang="c"> <span class="n" style="color: #333;">tid</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">bwGetTid</span><span class="p">(</span><span class="n" style="color: #333;">bw</span><span class="p">,</span> <span class="n" style="color: #333;">chrom</span><span class="p">);</span></span>
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397
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<pre style="margin: 0;">+<span id="LC397" class="line" lang="c"></span>
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398
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<pre style="margin: 0;">+<span id="LC398" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="n" style="color: #333;">starto</span><span class="p">)</span> <span class="p">{</span></span>
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399
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<pre style="margin: 0;">+<span id="LC399" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#ifdef WITHNUMPY</span></span>
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400
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<pre style="margin: 0;">+<span id="LC400" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="n" style="color: #333;">PyArray_IsScalar</span><span class="p">(</span><span class="n" style="color: #333;">starto</span><span class="p">,</span> <span class="n" style="color: #333;">Integer</span><span class="p">))</span> <span class="p">{</span></span>
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401
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<pre style="margin: 0;">+<span id="LC401" class="line" lang="c"> <span class="n" style="color: #333;">startl</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">long</span><span class="p">)</span> <span class="n" style="color: #333;">getNumpyL</span><span class="p">(</span><span class="n" style="color: #333;">starto</span><span class="p">);</span></span>
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402
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<pre style="margin: 0;">+<span id="LC402" class="line" lang="c"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> </span>
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403
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<pre style="margin: 0;">+<span id="LC403" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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404
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<pre style="margin: 0;">+<span id="LC404" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="n" style="color: #333;">PyLong_Check</span><span class="p">(</span><span class="n" style="color: #333;">starto</span><span class="p">))</span> <span class="p">{</span></span>
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405
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<pre style="margin: 0;">+<span id="LC405" class="line" lang="c"> <span class="n" style="color: #333;">startl</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">PyLong_AsLong</span><span class="p">(</span><span class="n" style="color: #333;">starto</span><span class="p">);</span></span>
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406
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<pre style="margin: 0;">+<span id="LC406" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#if PY_MAJOR_VERSION < 3</span></span>
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407
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<pre style="margin: 0;">+<span id="LC407" class="line" lang="c"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="n" style="color: #333;">PyInt_Check</span><span class="p">(</span><span class="n" style="color: #333;">starto</span><span class="p">))</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="408" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
408
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<pre style="margin: 0;">+<span id="LC408" class="line" lang="c"> <span class="n" style="color: #333;">startl</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">PyInt_AsLong</span><span class="p">(</span><span class="n" style="color: #333;">starto</span><span class="p">);</span></span>
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409
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<pre style="margin: 0;">+<span id="LC409" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<pre style="margin: 0;">+<span id="LC410" class="line" lang="c"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="p">{</span></span>
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411
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<pre style="margin: 0;">+<span id="LC411" class="line" lang="c"> <span class="n" style="color: #333;">PyErr_SetString</span><span class="p">(</span><span class="n" style="color: #333;">PyExc_RuntimeError</span><span class="p">,</span> <span class="s" style="color: #d14;">"The start coordinate must be a number!"</span><span class="p">);</span></span>
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412
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<pre style="margin: 0;">+<span id="LC412" class="line" lang="c"> <span class="k" style="font-weight: 600;">return</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">;</span></span>
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413
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<pre style="margin: 0;">+<span id="LC413" class="line" lang="c"> <span class="p">}</span></span>
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414
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<pre style="margin: 0;">+<span id="LC414" class="line" lang="c"> <span class="p">}</span></span>
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415
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<pre style="margin: 0;">+<span id="LC415" class="line" lang="c"></span>
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416
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<pre style="margin: 0;">+<span id="LC416" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="n" style="color: #333;">endo</span><span class="p">)</span> <span class="p">{</span></span>
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417
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<pre style="margin: 0;">+<span id="LC417" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#ifdef WITHNUMPY</span></span>
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418
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<pre style="margin: 0;">+<span id="LC418" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="n" style="color: #333;">PyArray_IsScalar</span><span class="p">(</span><span class="n" style="color: #333;">endo</span><span class="p">,</span> <span class="n" style="color: #333;">Integer</span><span class="p">))</span> <span class="p">{</span></span>
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419
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<pre style="margin: 0;">+<span id="LC419" class="line" lang="c"> <span class="n" style="color: #333;">endl</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">long</span><span class="p">)</span> <span class="n" style="color: #333;">getNumpyL</span><span class="p">(</span><span class="n" style="color: #333;">endo</span><span class="p">);</span></span>
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420
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<pre style="margin: 0;">+<span id="LC420" class="line" lang="c"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> </span>
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421
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<pre style="margin: 0;">+<span id="LC421" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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422
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<pre style="margin: 0;">+<span id="LC422" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="n" style="color: #333;">PyLong_Check</span><span class="p">(</span><span class="n" style="color: #333;">endo</span><span class="p">))</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="423" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
423
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<pre style="margin: 0;">+<span id="LC423" class="line" lang="c"> <span class="n" style="color: #333;">endl</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">PyLong_AsLong</span><span class="p">(</span><span class="n" style="color: #333;">endo</span><span class="p">);</span></span>
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424
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<pre style="margin: 0;">+<span id="LC424" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#if PY_MAJOR_VERSION < 3</span></span>
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425
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<pre style="margin: 0;">+<span id="LC425" class="line" lang="c"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="n" style="color: #333;">PyInt_Check</span><span class="p">(</span><span class="n" style="color: #333;">endo</span><span class="p">))</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="426" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC426" class="line" lang="c"> <span class="n" style="color: #333;">endl</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">PyInt_AsLong</span><span class="p">(</span><span class="n" style="color: #333;">endo</span><span class="p">);</span></span>
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427
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<pre style="margin: 0;">+<span id="LC427" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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428
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<pre style="margin: 0;">+<span id="LC428" class="line" lang="c"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="p">{</span></span>
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429
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<pre style="margin: 0;">+<span id="LC429" class="line" lang="c"> <span class="n" style="color: #333;">PyErr_SetString</span><span class="p">(</span><span class="n" style="color: #333;">PyExc_RuntimeError</span><span class="p">,</span> <span class="s" style="color: #d14;">"The end coordinate must be a number!"</span><span class="p">);</span></span>
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430
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<pre style="margin: 0;">+<span id="LC430" class="line" lang="c"> <span class="k" style="font-weight: 600;">return</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">;</span></span>
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431
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<pre style="margin: 0;">+<span id="LC431" class="line" lang="c"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC432" class="line" lang="c"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC433" class="line" lang="c"></span>
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<pre style="margin: 0;"> <span id="LC434" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="n" style="color: #333;">endl</span> <span class="o" style="font-weight: 600;">==</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">long</span><span class="p">)</span> <span class="o" style="font-weight: 600;">-</span><span class="mi" style="color: #099;">1</span> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">tid</span> <span class="o" style="font-weight: 600;">!=</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">uint32_t</span><span class="p">)</span> <span class="o" style="font-weight: 600;">-</span><span class="mi" style="color: #099;">1</span><span class="p">)</span> <span class="n" style="color: #333;">endl</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">bw</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">cl</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">len</span><span class="p">[</span><span class="n" style="color: #333;">tid</span><span class="p">];</span></span>
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351
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435
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<pre style="margin: 0;"> <span id="LC435" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="n" style="color: #333;">tid</span> <span class="o" style="font-weight: 600;">==</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">uint32_t</span><span class="p">)</span> <span class="o" style="font-weight: 600;">-</span><span class="mi" style="color: #099;">1</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">startl</span> <span class="o" style="font-weight: 600;">></span> <span class="n" style="color: #333;">end</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">endl</span> <span class="o" style="font-weight: 600;">></span> <span class="n" style="color: #333;">end</span><span class="p">)</span> <span class="p">{</span></span>
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352
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436
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<pre style="margin: 0;"> <span id="LC436" class="line" lang="c"> <span class="n" style="color: #333;">PyErr_SetString</span><span class="p">(</span><span class="n" style="color: #333;">PyExc_RuntimeError</span><span class="p">,</span> <span class="s" style="color: #d14;">"Invalid interval bounds!"</span><span class="p">);</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="412" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="496" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -412,7 +496,7 @@ static PyObject *pyBwGetValues(pyBigWigFile_t *self, PyObject *args) {</td>
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412
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496
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<pre style="margin: 0;"> <span id="LC496" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">uint32_t</span> <span class="n" style="color: #333;">start</span><span class="p">,</span> <span class="n" style="color: #333;">end</span> <span class="o" style="font-weight: 600;">=</span> <span class="o" style="font-weight: 600;">-</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="n" style="color: #333;">tid</span><span class="p">;</span></span>
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413
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497
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<pre style="margin: 0;"> <span id="LC497" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">long</span> <span class="n" style="color: #333;">startl</span><span class="p">,</span> <span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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414
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498
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<pre style="margin: 0;"> <span id="LC498" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">chrom</span><span class="p">;</span></span>
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415
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<pre style="margin: 0;">-<span id="LC415" class="line" lang="c"> <span class="n" style="color: #333;">PyObject</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">ret</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC499" class="line" lang="c"> <span class="n" style="color: #333;">PyObject</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">ret</span><span class="p"><span class="idiff left">,</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">*</span></span><span class="n" style="color: #333;"><span class="idiff">starto</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff"> </span><span class="nb" style="color: #0086b3;"><span class="idiff">NULL</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">*</span></span><span class="n" style="color: #333;"><span class="idiff">endo</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff"> </span><span class="nb" style="color: #0086b3;"><span class="idiff right">NULL</span></span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC500" class="line" lang="c"> <span class="n" style="color: #333;">bwOverlappingIntervals_t</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">o</span><span class="p">;</span></span>
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417
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501
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<pre style="margin: 0;"> <span id="LC501" class="line" lang="c"></span>
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418
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502
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<pre style="margin: 0;"> <span id="LC502" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">bw</span><span class="p">)</span> <span class="p">{</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="429" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="513" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -429,20 +513,54 @@ static PyObject *pyBwGetValues(pyBigWigFile_t *self, PyObject *args) {</td>
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429
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513
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<pre style="margin: 0;"> <span id="LC513" class="line" lang="c"> <span class="k" style="font-weight: 600;">static</span> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">kwd_list</span><span class="p">[]</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">{</span><span class="s" style="color: #d14;">"chrom"</span><span class="p">,</span> <span class="s" style="color: #d14;">"start"</span><span class="p">,</span> <span class="s" style="color: #d14;">"end"</span><span class="p">,</span> <span class="s" style="color: #d14;">"numpy"</span><span class="p">,</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">};</span></span>
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430
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514
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<pre style="margin: 0;"> <span id="LC514" class="line" lang="c"> <span class="n" style="color: #333;">PyObject</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">outputNumpy</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">Py_False</span><span class="p">;</span></span>
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431
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515
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<pre style="margin: 0;"> <span id="LC515" class="line" lang="c"></span>
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432
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<pre style="margin: 0;">-<span id="LC432" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">PyArg_ParseTupleAndKeywords</span><span class="p">(</span><span class="n" style="color: #333;">args</span><span class="p">,</span> <span class="n" style="color: #333;">kwds</span><span class="p">,</span> <span class="s" style="color: #d14;">"s<span class="idiff left">kk|O"</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">kwd_list</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">&</span></span><span class="n" style="color: #333;"><span class="idiff">chrom</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">&</span></span><span class="n" style="color: #333;"><span class="idiff">startl</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">&</span></span><span class="n" style="color: #333;"><span class="idiff right">endl</span></span><span class="p">,</span> <span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">outputNumpy</span><span class="p">))</span> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC516" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">PyArg_ParseTupleAndKeywords</span><span class="p">(</span><span class="n" style="color: #333;">args</span><span class="p">,</span> <span class="n" style="color: #333;">kwds</span><span class="p">,</span> <span class="s" style="color: #d14;">"s<span class="idiff left">OO|O"</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">kwd_list</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">&</span></span><span class="n" style="color: #333;"><span class="idiff">chrom</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">&</span></span><span class="n" style="color: #333;"><span class="idiff">starto</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">&</span></span><span class="n" style="color: #333;"><span class="idiff right">endo</span></span><span class="p">,</span> <span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">outputNumpy</span><span class="p">))</span> <span class="p">{</span></span>
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517
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<pre style="margin: 0;"> <span id="LC517" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#else</span></span>
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<pre style="margin: 0;">-<span id="LC434" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">PyArg_ParseTuple</span><span class="p">(</span><span class="n" style="color: #333;">args</span><span class="p">,</span> <span class="s" style="color: #d14;">"s<span class="idiff left">kk"</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">&</span></span><span class="n" style="color: #333;"><span class="idiff">chrom</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">&</span></span><span class="n" style="color: #333;"><span class="idiff">startl</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">&</span></span><span class="n" style="color: #333;"><span class="idiff right">endl</span></span><span class="p">))</span> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC518" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">PyArg_ParseTuple</span><span class="p">(</span><span class="n" style="color: #333;">args</span><span class="p">,</span> <span class="s" style="color: #d14;">"s<span class="idiff left">OO"</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">&</span></span><span class="n" style="color: #333;"><span class="idiff">chrom</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">&</span></span><span class="n" style="color: #333;"><span class="idiff">starto</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">&</span></span><span class="n" style="color: #333;"><span class="idiff right">endo</span></span><span class="p">))</span> <span class="p">{</span></span>
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<pre style="margin: 0;"> <span id="LC519" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<pre style="margin: 0;"> <span id="LC520" class="line" lang="c"> <span class="n" style="color: #333;">PyErr_SetString</span><span class="p">(</span><span class="n" style="color: #333;">PyExc_RuntimeError</span><span class="p">,</span> <span class="s" style="color: #d14;">"You must supply a chromosome, start and end position.</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>
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437
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<pre style="margin: 0;"> <span id="LC521" class="line" lang="c"> <span class="k" style="font-weight: 600;">return</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC522" class="line" lang="c"> <span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC523" class="line" lang="c"></span>
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<pre style="margin: 0;"> <span id="LC524" class="line" lang="c"> <span class="n" style="color: #333;">tid</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">bwGetTid</span><span class="p">(</span><span class="n" style="color: #333;">bw</span><span class="p">,</span> <span class="n" style="color: #333;">chrom</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC525" class="line" lang="c"></span>
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<pre style="margin: 0;">+<span id="LC526" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#ifdef WITHNUMPY</span></span>
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<pre style="margin: 0;">+<span id="LC527" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="n" style="color: #333;">PyArray_IsScalar</span><span class="p">(</span><span class="n" style="color: #333;">starto</span><span class="p">,</span> <span class="n" style="color: #333;">Integer</span><span class="p">))</span> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC528" class="line" lang="c"> <span class="n" style="color: #333;">startl</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">long</span><span class="p">)</span> <span class="n" style="color: #333;">getNumpyL</span><span class="p">(</span><span class="n" style="color: #333;">starto</span><span class="p">);</span></span>
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529
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<pre style="margin: 0;">+<span id="LC529" class="line" lang="c"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span></span>
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<pre style="margin: 0;">+<span id="LC530" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<pre style="margin: 0;">+<span id="LC531" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="n" style="color: #333;">PyLong_Check</span><span class="p">(</span><span class="n" style="color: #333;">starto</span><span class="p">))</span> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC532" class="line" lang="c"> <span class="n" style="color: #333;">startl</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">PyLong_AsLong</span><span class="p">(</span><span class="n" style="color: #333;">starto</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC533" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#if PY_MAJOR_VERSION < 3</span></span>
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<pre style="margin: 0;">+<span id="LC534" class="line" lang="c"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="n" style="color: #333;">PyInt_Check</span><span class="p">(</span><span class="n" style="color: #333;">starto</span><span class="p">))</span> <span class="p">{</span></span>
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535
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<pre style="margin: 0;">+<span id="LC535" class="line" lang="c"> <span class="n" style="color: #333;">startl</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">PyInt_AsLong</span><span class="p">(</span><span class="n" style="color: #333;">starto</span><span class="p">);</span></span>
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536
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<pre style="margin: 0;">+<span id="LC536" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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537
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<pre style="margin: 0;">+<span id="LC537" class="line" lang="c"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="p">{</span></span>
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538
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<pre style="margin: 0;">+<span id="LC538" class="line" lang="c"> <span class="n" style="color: #333;">PyErr_SetString</span><span class="p">(</span><span class="n" style="color: #333;">PyExc_RuntimeError</span><span class="p">,</span> <span class="s" style="color: #d14;">"The start coordinate must be a number!"</span><span class="p">);</span></span>
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539
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<pre style="margin: 0;">+<span id="LC539" class="line" lang="c"> <span class="k" style="font-weight: 600;">return</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">;</span></span>
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540
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<pre style="margin: 0;">+<span id="LC540" class="line" lang="c"> <span class="p">}</span></span>
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541
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<pre style="margin: 0;">+<span id="LC541" class="line" lang="c"></span>
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542
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<pre style="margin: 0;">+<span id="LC542" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#ifdef WITHNUMPY</span></span>
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543
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<pre style="margin: 0;">+<span id="LC543" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="n" style="color: #333;">PyArray_IsScalar</span><span class="p">(</span><span class="n" style="color: #333;">endo</span><span class="p">,</span> <span class="n" style="color: #333;">Integer</span><span class="p">))</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="544" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
544
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<pre style="margin: 0;">+<span id="LC544" class="line" lang="c"> <span class="n" style="color: #333;">endl</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">long</span><span class="p">)</span> <span class="n" style="color: #333;">getNumpyL</span><span class="p">(</span><span class="n" style="color: #333;">endo</span><span class="p">);</span></span>
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545
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<pre style="margin: 0;">+<span id="LC545" class="line" lang="c"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span></span>
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546
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<pre style="margin: 0;">+<span id="LC546" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<td class="diff-line-num new new_line" data-linenumber="547" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
547
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<pre style="margin: 0;">+<span id="LC547" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="n" style="color: #333;">PyLong_Check</span><span class="p">(</span><span class="n" style="color: #333;">endo</span><span class="p">))</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="548" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
548
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<pre style="margin: 0;">+<span id="LC548" class="line" lang="c"> <span class="n" style="color: #333;">endl</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">PyLong_AsLong</span><span class="p">(</span><span class="n" style="color: #333;">endo</span><span class="p">);</span></span>
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549
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<pre style="margin: 0;">+<span id="LC549" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#if PY_MAJOR_VERSION < 3</span></span>
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<td class="diff-line-num new new_line" data-linenumber="550" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
550
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<pre style="margin: 0;">+<span id="LC550" class="line" lang="c"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="n" style="color: #333;">PyInt_Check</span><span class="p">(</span><span class="n" style="color: #333;">endo</span><span class="p">))</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="551" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
551
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<pre style="margin: 0;">+<span id="LC551" class="line" lang="c"> <span class="n" style="color: #333;">endl</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">PyInt_AsLong</span><span class="p">(</span><span class="n" style="color: #333;">endo</span><span class="p">);</span></span>
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552
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<pre style="margin: 0;">+<span id="LC552" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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553
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<pre style="margin: 0;">+<span id="LC553" class="line" lang="c"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="p">{</span></span>
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554
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<pre style="margin: 0;">+<span id="LC554" class="line" lang="c"> <span class="n" style="color: #333;">PyErr_SetString</span><span class="p">(</span><span class="n" style="color: #333;">PyExc_RuntimeError</span><span class="p">,</span> <span class="s" style="color: #d14;">"The end coordinate must be a number!"</span><span class="p">);</span></span>
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555
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<pre style="margin: 0;">+<span id="LC555" class="line" lang="c"> <span class="k" style="font-weight: 600;">return</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">;</span></span>
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556
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<pre style="margin: 0;">+<span id="LC556" class="line" lang="c"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC557" class="line" lang="c"></span>
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441
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558
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<pre style="margin: 0;"> <span id="LC558" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="n" style="color: #333;">endl</span> <span class="o" style="font-weight: 600;">==</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">long</span><span class="p">)</span> <span class="o" style="font-weight: 600;">-</span><span class="mi" style="color: #099;">1</span> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">tid</span> <span class="o" style="font-weight: 600;">!=</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">uint32_t</span><span class="p">)</span> <span class="o" style="font-weight: 600;">-</span><span class="mi" style="color: #099;">1</span><span class="p">)</span> <span class="n" style="color: #333;">endl</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">bw</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">cl</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">len</span><span class="p">[</span><span class="n" style="color: #333;">tid</span><span class="p">];</span></span>
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442
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<td class="diff-line-num new_line" data-linenumber="559" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
559
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<pre style="margin: 0;"> <span id="LC559" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="n" style="color: #333;">tid</span> <span class="o" style="font-weight: 600;">==</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">uint32_t</span><span class="p">)</span> <span class="o" style="font-weight: 600;">-</span><span class="mi" style="color: #099;">1</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">startl</span> <span class="o" style="font-weight: 600;">></span> <span class="n" style="color: #333;">end</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">endl</span> <span class="o" style="font-weight: 600;">></span> <span class="n" style="color: #333;">end</span><span class="p">)</span> <span class="p">{</span></span>
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443
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560
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<pre style="margin: 0;"> <span id="LC560" class="line" lang="c"> <span class="n" style="color: #333;">PyErr_SetString</span><span class="p">(</span><span class="n" style="color: #333;">PyExc_RuntimeError</span><span class="p">,</span> <span class="s" style="color: #d14;">"Invalid interval bounds!"</span><span class="p">);</span></span>
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444
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561
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<pre style="margin: 0;"> <span id="LC561" class="line" lang="c"> <span class="k" style="font-weight: 600;">return</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">;</span></span>
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445
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562
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<pre style="margin: 0;"> <span id="LC562" class="line" lang="c"> <span class="p">}</span></span>
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563
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<pre style="margin: 0;">+<span id="LC563" class="line" lang="c"></span>
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446
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564
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<pre style="margin: 0;"> <span id="LC564" class="line" lang="c"> <span class="n" style="color: #333;">start</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">uint32_t</span><span class="p">)</span> <span class="n" style="color: #333;">startl</span><span class="p">;</span></span>
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447
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<td class="diff-line-num new_line" data-linenumber="565" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
565
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<pre style="margin: 0;"> <span id="LC565" class="line" lang="c"> <span class="n" style="color: #333;">end</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">uint32_t</span><span class="p">)</span> <span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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448
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566
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<pre style="margin: 0;"> <span id="LC566" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="n" style="color: #333;">end</span> <span class="o" style="font-weight: 600;"><=</span> <span class="n" style="color: #333;">start</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">end</span> <span class="o" style="font-weight: 600;">></span> <span class="n" style="color: #333;">bw</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">cl</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">len</span><span class="p">[</span><span class="n" style="color: #333;">tid</span><span class="p">]</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">start</span> <span class="o" style="font-weight: 600;">>=</span> <span class="n" style="color: #333;">end</span><span class="p">)</span> <span class="p">{</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="496" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="614" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -496,7 +614,7 @@ static PyObject *pyBwGetIntervals(pyBigWigFile_t *self, PyObject *args, PyObject</td>
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496
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614
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<pre style="margin: 0;"> <span id="LC614" class="line" lang="c"> <span class="k" style="font-weight: 600;">static</span> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">kwd_list</span><span class="p">[]</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">{</span><span class="s" style="color: #d14;">"chrom"</span><span class="p">,</span> <span class="s" style="color: #d14;">"start"</span><span class="p">,</span> <span class="s" style="color: #d14;">"end"</span><span class="p">,</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">};</span></span>
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497
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<td class="diff-line-num new_line" data-linenumber="615" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
615
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<pre style="margin: 0;"> <span id="LC615" class="line" lang="c"> <span class="n" style="color: #333;">bwOverlappingIntervals_t</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">intervals</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">;</span></span>
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498
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616
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<pre style="margin: 0;"> <span id="LC616" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">chrom</span><span class="p">;</span></span>
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499
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<pre style="margin: 0;">-<span id="LC499" class="line" lang="c"> <span class="n" style="color: #333;">PyObject</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">ret</span><span class="p">;</span></span>
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617
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<pre style="margin: 0;">+<span id="LC617" class="line" lang="c"> <span class="n" style="color: #333;">PyObject</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">ret</span><span class="p"><span class="idiff left">,</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">*</span></span><span class="n" style="color: #333;"><span class="idiff">starto</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff"> </span><span class="nb" style="color: #0086b3;"><span class="idiff">NULL</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">*</span></span><span class="n" style="color: #333;"><span class="idiff">endo</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff"> </span><span class="nb" style="color: #0086b3;"><span class="idiff right">NULL</span></span><span class="p">;</span></span>
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500
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618
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<pre style="margin: 0;"> <span id="LC618" class="line" lang="c"></span>
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501
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619
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<pre style="margin: 0;"> <span id="LC619" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">bw</span><span class="p">)</span> <span class="p">{</span></span>
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502
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620
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<pre style="margin: 0;"> <span id="LC620" class="line" lang="c"> <span class="n" style="color: #333;">PyErr_SetString</span><span class="p">(</span><span class="n" style="color: #333;">PyExc_RuntimeError</span><span class="p">,</span> <span class="s" style="color: #d14;">"The bigWig file handle is not opened!"</span><span class="p">);</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="508" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="626" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -508,7 +626,7 @@ static PyObject *pyBwGetIntervals(pyBigWigFile_t *self, PyObject *args, PyObject</td>
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508
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626
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<pre style="margin: 0;"> <span id="LC626" class="line" lang="c"> <span class="k" style="font-weight: 600;">return</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">;</span></span>
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509
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627
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<pre style="margin: 0;"> <span id="LC627" class="line" lang="c"> <span class="p">}</span></span>
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510
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628
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<pre style="margin: 0;"> <span id="LC628" class="line" lang="c"></span>
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511
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<pre style="margin: 0;">-<span id="LC511" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">PyArg_ParseTupleAndKeywords</span><span class="p">(</span><span class="n" style="color: #333;">args</span><span class="p">,</span> <span class="n" style="color: #333;">kwds</span><span class="p">,</span> <span class="s" style="color: #d14;">"s|<span class="idiff left">kk"</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">kwd_list</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">&</span></span><span class="n" style="color: #333;"><span class="idiff">chrom</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">&</span></span><span class="n" style="color: #333;"><span class="idiff">startl</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">&</span></span><span class="n" style="color: #333;"><span class="idiff right">endl</span></span><span class="p">))</span> <span class="p">{</span></span>
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629
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<pre style="margin: 0;">+<span id="LC629" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">PyArg_ParseTupleAndKeywords</span><span class="p">(</span><span class="n" style="color: #333;">args</span><span class="p">,</span> <span class="n" style="color: #333;">kwds</span><span class="p">,</span> <span class="s" style="color: #d14;">"s|<span class="idiff left">OO"</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">kwd_list</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">&</span></span><span class="n" style="color: #333;"><span class="idiff">chrom</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">&</span></span><span class="n" style="color: #333;"><span class="idiff">starto</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">&</span></span><span class="n" style="color: #333;"><span class="idiff right">endo</span></span><span class="p">))</span> <span class="p">{</span></span>
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512
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630
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<pre style="margin: 0;"> <span id="LC630" class="line" lang="c"> <span class="n" style="color: #333;">PyErr_SetString</span><span class="p">(</span><span class="n" style="color: #333;">PyExc_RuntimeError</span><span class="p">,</span> <span class="s" style="color: #d14;">"You must supply at least a chromosome.</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>
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513
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631
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<pre style="margin: 0;"> <span id="LC631" class="line" lang="c"> <span class="k" style="font-weight: 600;">return</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">;</span></span>
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514
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632
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<pre style="margin: 0;"> <span id="LC632" class="line" lang="c"> <span class="p">}</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="520" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="638" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -520,6 +638,43 @@ static PyObject *pyBwGetIntervals(pyBigWigFile_t *self, PyObject *args, PyObject</td>
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520
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638
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<pre style="margin: 0;"> <span id="LC638" class="line" lang="c"> <span class="n" style="color: #333;">PyErr_SetString</span><span class="p">(</span><span class="n" style="color: #333;">PyExc_RuntimeError</span><span class="p">,</span> <span class="s" style="color: #d14;">"Invalid interval bounds!"</span><span class="p">);</span></span>
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521
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639
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<pre style="margin: 0;"> <span id="LC639" class="line" lang="c"> <span class="k" style="font-weight: 600;">return</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">;</span></span>
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522
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640
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<pre style="margin: 0;"> <span id="LC640" class="line" lang="c"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC641" class="line" lang="c"></span>
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<pre style="margin: 0;">+<span id="LC642" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="n" style="color: #333;">starto</span><span class="p">)</span> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC643" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#ifdef WITHNUMPY</span></span>
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<pre style="margin: 0;">+<span id="LC644" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="n" style="color: #333;">PyArray_IsScalar</span><span class="p">(</span><span class="n" style="color: #333;">starto</span><span class="p">,</span> <span class="n" style="color: #333;">Integer</span><span class="p">))</span> <span class="p">{</span></span>
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645
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<pre style="margin: 0;">+<span id="LC645" class="line" lang="c"> <span class="n" style="color: #333;">startl</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">long</span><span class="p">)</span> <span class="n" style="color: #333;">getNumpyL</span><span class="p">(</span><span class="n" style="color: #333;">starto</span><span class="p">);</span></span>
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646
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<pre style="margin: 0;">+<span id="LC646" class="line" lang="c"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span></span>
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647
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<pre style="margin: 0;">+<span id="LC647" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<pre style="margin: 0;">+<span id="LC648" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="n" style="color: #333;">PyLong_Check</span><span class="p">(</span><span class="n" style="color: #333;">starto</span><span class="p">))</span> <span class="p">{</span></span>
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649
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<pre style="margin: 0;">+<span id="LC649" class="line" lang="c"> <span class="n" style="color: #333;">startl</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">PyLong_AsLong</span><span class="p">(</span><span class="n" style="color: #333;">starto</span><span class="p">);</span></span>
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650
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<pre style="margin: 0;">+<span id="LC650" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#if PY_MAJOR_VERSION < 3</span></span>
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651
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<pre style="margin: 0;">+<span id="LC651" class="line" lang="c"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="n" style="color: #333;">PyInt_Check</span><span class="p">(</span><span class="n" style="color: #333;">starto</span><span class="p">))</span> <span class="p">{</span></span>
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652
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<pre style="margin: 0;">+<span id="LC652" class="line" lang="c"> <span class="n" style="color: #333;">startl</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">PyInt_AsLong</span><span class="p">(</span><span class="n" style="color: #333;">starto</span><span class="p">);</span></span>
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653
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<pre style="margin: 0;">+<span id="LC653" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<pre style="margin: 0;">+<span id="LC654" class="line" lang="c"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="p">{</span></span>
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655
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<pre style="margin: 0;">+<span id="LC655" class="line" lang="c"> <span class="n" style="color: #333;">PyErr_SetString</span><span class="p">(</span><span class="n" style="color: #333;">PyExc_RuntimeError</span><span class="p">,</span> <span class="s" style="color: #d14;">"The start coordinate must be a number!"</span><span class="p">);</span></span>
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656
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<pre style="margin: 0;">+<span id="LC656" class="line" lang="c"> <span class="k" style="font-weight: 600;">return</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC657" class="line" lang="c"> <span class="p">}</span></span>
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658
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<pre style="margin: 0;">+<span id="LC658" class="line" lang="c"> <span class="p">}</span></span>
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659
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<pre style="margin: 0;">+<span id="LC659" class="line" lang="c"></span>
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660
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<pre style="margin: 0;">+<span id="LC660" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="n" style="color: #333;">endo</span><span class="p">)</span> <span class="p">{</span></span>
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661
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<pre style="margin: 0;">+<span id="LC661" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#ifdef WITHNUMPY</span></span>
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662
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<pre style="margin: 0;">+<span id="LC662" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="n" style="color: #333;">PyArray_IsScalar</span><span class="p">(</span><span class="n" style="color: #333;">endo</span><span class="p">,</span> <span class="n" style="color: #333;">Integer</span><span class="p">))</span> <span class="p">{</span></span>
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663
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<pre style="margin: 0;">+<span id="LC663" class="line" lang="c"> <span class="n" style="color: #333;">endl</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">long</span><span class="p">)</span> <span class="n" style="color: #333;">getNumpyL</span><span class="p">(</span><span class="n" style="color: #333;">endo</span><span class="p">);</span></span>
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664
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<pre style="margin: 0;">+<span id="LC664" class="line" lang="c"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span></span>
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665
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<pre style="margin: 0;">+<span id="LC665" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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666
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<pre style="margin: 0;">+<span id="LC666" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="n" style="color: #333;">PyLong_Check</span><span class="p">(</span><span class="n" style="color: #333;">endo</span><span class="p">))</span> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC667" class="line" lang="c"> <span class="n" style="color: #333;">endl</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">PyLong_AsLong</span><span class="p">(</span><span class="n" style="color: #333;">endo</span><span class="p">);</span></span>
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668
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<pre style="margin: 0;">+<span id="LC668" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#if PY_MAJOR_VERSION < 3</span></span>
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669
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<pre style="margin: 0;">+<span id="LC669" class="line" lang="c"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="n" style="color: #333;">PyInt_Check</span><span class="p">(</span><span class="n" style="color: #333;">endo</span><span class="p">))</span> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC670" class="line" lang="c"> <span class="n" style="color: #333;">endl</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">PyInt_AsLong</span><span class="p">(</span><span class="n" style="color: #333;">endo</span><span class="p">);</span></span>
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671
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<pre style="margin: 0;">+<span id="LC671" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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672
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<pre style="margin: 0;">+<span id="LC672" class="line" lang="c"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="p">{</span></span>
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673
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<pre style="margin: 0;">+<span id="LC673" class="line" lang="c"> <span class="n" style="color: #333;">PyErr_SetString</span><span class="p">(</span><span class="n" style="color: #333;">PyExc_RuntimeError</span><span class="p">,</span> <span class="s" style="color: #d14;">"The end coordinate must be a number!"</span><span class="p">);</span></span>
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674
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<pre style="margin: 0;">+<span id="LC674" class="line" lang="c"> <span class="k" style="font-weight: 600;">return</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">;</span></span>
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675
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<pre style="margin: 0;">+<span id="LC675" class="line" lang="c"> <span class="p">}</span></span>
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676
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<pre style="margin: 0;">+<span id="LC676" class="line" lang="c"> <span class="p">}</span></span>
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677
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<pre style="margin: 0;">+<span id="LC677" class="line" lang="c"></span>
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523
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678
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<pre style="margin: 0;"> <span id="LC678" class="line" lang="c"> <span class="n" style="color: #333;">start</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">uint32_t</span><span class="p">)</span> <span class="n" style="color: #333;">startl</span><span class="p">;</span></span>
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524
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679
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<pre style="margin: 0;"> <span id="LC679" class="line" lang="c"> <span class="n" style="color: #333;">end</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">uint32_t</span><span class="p">)</span> <span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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525
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680
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<pre style="margin: 0;"> <span id="LC680" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="n" style="color: #333;">end</span> <span class="o" style="font-weight: 600;"><=</span> <span class="n" style="color: #333;">start</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">end</span> <span class="o" style="font-weight: 600;">></span> <span class="n" style="color: #333;">bw</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">cl</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">len</span><span class="p">[</span><span class="n" style="color: #333;">tid</span><span class="p">]</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">start</span> <span class="o" style="font-weight: 600;">>=</span> <span class="n" style="color: #333;">end</span><span class="p">)</span> <span class="p">{</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1548" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1703" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1548,7 +1703,7 @@ static PyObject *pyBBGetEntries(pyBigWigFile_t *self, PyObject *args, PyObject *</td>
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1548
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1703
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<pre style="margin: 0;"> <span id="LC1703" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">long</span> <span class="n" style="color: #333;">startl</span><span class="p">,</span> <span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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1549
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1704
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<pre style="margin: 0;"> <span id="LC1704" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">chrom</span><span class="p">;</span></span>
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1550
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1705
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<pre style="margin: 0;"> <span id="LC1705" class="line" lang="c"> <span class="k" style="font-weight: 600;">static</span> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">kwd_list</span><span class="p">[]</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">{</span><span class="s" style="color: #d14;">"chrom"</span><span class="p">,</span> <span class="s" style="color: #d14;">"start"</span><span class="p">,</span> <span class="s" style="color: #d14;">"end"</span><span class="p">,</span> <span class="s" style="color: #d14;">"withString"</span><span class="p">,</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">};</span></span>
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1551
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<pre style="margin: 0;">-<span id="LC1551" class="line" lang="c"> <span class="n" style="color: #333;">PyObject</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">ret</span><span class="p">,</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">t</span><span class="p">;</span></span>
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1706
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<pre style="margin: 0;">+<span id="LC1706" class="line" lang="c"> <span class="n" style="color: #333;">PyObject</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">ret</span><span class="p">,</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">t</span><span class="p"><span class="idiff left">,</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">*</span></span><span class="n" style="color: #333;"><span class="idiff">starto</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff"> </span><span class="nb" style="color: #0086b3;"><span class="idiff">NULL</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">*</span></span><span class="n" style="color: #333;"><span class="idiff">endo</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff"> </span><span class="nb" style="color: #0086b3;"><span class="idiff right">NULL</span></span><span class="p">;</span></span>
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1552
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1707
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<pre style="margin: 0;"> <span id="LC1707" class="line" lang="c"> <span class="n" style="color: #333;">PyObject</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">withStringPy</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">Py_True</span><span class="p">;</span></span>
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1553
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1708
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<pre style="margin: 0;"> <span id="LC1708" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">withString</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">1</span><span class="p">;</span></span>
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1554
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1709
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<pre style="margin: 0;"> <span id="LC1709" class="line" lang="c"> <span class="n" style="color: #333;">bbOverlappingEntries_t</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">o</span><span class="p">;</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1563,12 +1718,45 @@ static PyObject *pyBBGetEntries(pyBigWigFile_t *self, PyObject *args, PyObject *</td>
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1563
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<td class="diff-line-num new_line" data-linenumber="1718" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1718
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<pre style="margin: 0;"> <span id="LC1718" class="line" lang="c"> <span class="k" style="font-weight: 600;">return</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">;</span> </span>
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<td class="diff-line-num old_line" data-linenumber="1564" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1564
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<td class="diff-line-num new_line" data-linenumber="1719" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1719
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<pre style="margin: 0;"> <span id="LC1719" class="line" lang="c"> <span class="p">}</span></span>
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1565
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<td class="diff-line-num new_line" data-linenumber="1720" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1720
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<pre style="margin: 0;"> <span id="LC1720" class="line" lang="c"></span>
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<td class="diff-line-num old old_line" data-linenumber="1566" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1566
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<td class="diff-line-num new_line old" data-linenumber="1721" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1566" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">PyArg_ParseTupleAndKeywords</span><span class="p">(</span><span class="n" style="color: #333;">args</span><span class="p">,</span> <span class="n" style="color: #333;">kwds</span><span class="p">,</span> <span class="s" style="color: #d14;">"s<span class="idiff left">kk|O"</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">kwd_list</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">&</span></span><span class="n" style="color: #333;"><span class="idiff">chrom</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">&</span></span><span class="n" style="color: #333;"><span class="idiff">startl</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">&</span></span><span class="n" style="color: #333;"><span class="idiff right">endl</span></span><span class="p">,</span> <span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">withStringPy</span><span class="p">))</span> <span class="p">{</span></span>
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<td class="diff-line-num new old_line" data-linenumber="1567" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1721" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1721
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<pre style="margin: 0;">+<span id="LC1721" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">PyArg_ParseTupleAndKeywords</span><span class="p">(</span><span class="n" style="color: #333;">args</span><span class="p">,</span> <span class="n" style="color: #333;">kwds</span><span class="p">,</span> <span class="s" style="color: #d14;">"s<span class="idiff left">OO|O"</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">kwd_list</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">&</span></span><span class="n" style="color: #333;"><span class="idiff">chrom</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">&</span></span><span class="n" style="color: #333;"><span class="idiff">starto</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">&</span></span><span class="n" style="color: #333;"><span class="idiff right">endo</span></span><span class="p">,</span> <span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">withStringPy</span><span class="p">))</span> <span class="p">{</span></span>
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1567
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<td class="diff-line-num new_line" data-linenumber="1722" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1722
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<pre style="margin: 0;"> <span id="LC1722" class="line" lang="c"> <span class="n" style="color: #333;">PyErr_SetString</span><span class="p">(</span><span class="n" style="color: #333;">PyExc_RuntimeError</span><span class="p">,</span> <span class="s" style="color: #d14;">"You must supply a chromosome, start and end position.</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>
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<td class="diff-line-num old_line" data-linenumber="1568" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1568
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1723
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<pre style="margin: 0;"> <span id="LC1723" class="line" lang="c"> <span class="k" style="font-weight: 600;">return</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">;</span></span>
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1569
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<td class="diff-line-num new_line" data-linenumber="1724" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1724
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<pre style="margin: 0;"> <span id="LC1724" class="line" lang="c"> <span class="p">}</span></span>
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1570
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1725
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<pre style="margin: 0;"> <span id="LC1725" class="line" lang="c"></span>
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<td class="diff-line-num old_line" data-linenumber="1571" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1571
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<td class="diff-line-num new_line" data-linenumber="1726" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1726
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<pre style="margin: 0;"> <span id="LC1726" class="line" lang="c"> <span class="n" style="color: #333;">tid</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">bwGetTid</span><span class="p">(</span><span class="n" style="color: #333;">bw</span><span class="p">,</span> <span class="n" style="color: #333;">chrom</span><span class="p">);</span></span>
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<td class="diff-line-num new old_line" data-linenumber="1572" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1727" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1727
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<pre style="margin: 0;">+<span id="LC1727" class="line" lang="c"></span>
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<td class="diff-line-num new new_line" data-linenumber="1728" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1728
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<pre style="margin: 0;">+<span id="LC1728" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#ifdef WITHNUMPY</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1729" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1729
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<pre style="margin: 0;">+<span id="LC1729" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="n" style="color: #333;">PyArray_IsScalar</span><span class="p">(</span><span class="n" style="color: #333;">starto</span><span class="p">,</span> <span class="n" style="color: #333;">Integer</span><span class="p">))</span> <span class="p">{</span></span>
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<td class="diff-line-num new old_line" data-linenumber="1572" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1730" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1730
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<pre style="margin: 0;">+<span id="LC1730" class="line" lang="c"> <span class="n" style="color: #333;">startl</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">long</span><span class="p">)</span> <span class="n" style="color: #333;">getNumpyL</span><span class="p">(</span><span class="n" style="color: #333;">starto</span><span class="p">);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1731" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1731
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<pre style="margin: 0;">+<span id="LC1731" class="line" lang="c"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1732" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1732
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<pre style="margin: 0;">+<span id="LC1732" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1733" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1733
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<pre style="margin: 0;">+<span id="LC1733" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="n" style="color: #333;">PyLong_Check</span><span class="p">(</span><span class="n" style="color: #333;">starto</span><span class="p">))</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1734" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1734
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<pre style="margin: 0;">+<span id="LC1734" class="line" lang="c"> <span class="n" style="color: #333;">startl</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">PyLong_AsLong</span><span class="p">(</span><span class="n" style="color: #333;">starto</span><span class="p">);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1735" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1735
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<pre style="margin: 0;">+<span id="LC1735" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#if PY_MAJOR_VERSION < 3</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1736" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1736
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<pre style="margin: 0;">+<span id="LC1736" class="line" lang="c"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="n" style="color: #333;">PyInt_Check</span><span class="p">(</span><span class="n" style="color: #333;">starto</span><span class="p">))</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1737" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1737
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<pre style="margin: 0;">+<span id="LC1737" class="line" lang="c"> <span class="n" style="color: #333;">startl</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">PyInt_AsLong</span><span class="p">(</span><span class="n" style="color: #333;">starto</span><span class="p">);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1738" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1738
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<pre style="margin: 0;">+<span id="LC1738" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1739" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1739
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<pre style="margin: 0;">+<span id="LC1739" class="line" lang="c"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1740" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1740
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<pre style="margin: 0;">+<span id="LC1740" class="line" lang="c"> <span class="n" style="color: #333;">PyErr_SetString</span><span class="p">(</span><span class="n" style="color: #333;">PyExc_RuntimeError</span><span class="p">,</span> <span class="s" style="color: #d14;">"The start coordinate must be a number!"</span><span class="p">);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1741" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1741
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<pre style="margin: 0;">+<span id="LC1741" class="line" lang="c"> <span class="k" style="font-weight: 600;">return</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1742" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1742
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<pre style="margin: 0;">+<span id="LC1742" class="line" lang="c"> <span class="p">}</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1743" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1743
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<pre style="margin: 0;">+<span id="LC1743" class="line" lang="c"></span>
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<td class="diff-line-num new old_line" data-linenumber="1572" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1744" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1744
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<pre style="margin: 0;">+<span id="LC1744" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#ifdef WITHNUMPY</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1745" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1745
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1745" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="n" style="color: #333;">PyArray_IsScalar</span><span class="p">(</span><span class="n" style="color: #333;">endo</span><span class="p">,</span> <span class="n" style="color: #333;">Integer</span><span class="p">))</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1746" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1746
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<pre style="margin: 0;">+<span id="LC1746" class="line" lang="c"> <span class="n" style="color: #333;">endl</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">long</span><span class="p">)</span> <span class="n" style="color: #333;">getNumpyL</span><span class="p">(</span><span class="n" style="color: #333;">endo</span><span class="p">);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1747" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1747
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<pre style="margin: 0;">+<span id="LC1747" class="line" lang="c"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1748" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1748
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<pre style="margin: 0;">+<span id="LC1748" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1749" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1749
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<pre style="margin: 0;">+<span id="LC1749" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="n" style="color: #333;">PyLong_Check</span><span class="p">(</span><span class="n" style="color: #333;">endo</span><span class="p">))</span> <span class="p">{</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1750" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1750
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<pre style="margin: 0;">+<span id="LC1750" class="line" lang="c"> <span class="n" style="color: #333;">endl</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">PyLong_AsLong</span><span class="p">(</span><span class="n" style="color: #333;">endo</span><span class="p">);</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1751" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1751
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<pre style="margin: 0;">+<span id="LC1751" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#if PY_MAJOR_VERSION < 3</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1752" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1752
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<pre style="margin: 0;">+<span id="LC1752" class="line" lang="c"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="n" style="color: #333;">PyInt_Check</span><span class="p">(</span><span class="n" style="color: #333;">endo</span><span class="p">))</span> <span class="p">{</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1753" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1753
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<pre style="margin: 0;">+<span id="LC1753" class="line" lang="c"> <span class="n" style="color: #333;">endl</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">PyInt_AsLong</span><span class="p">(</span><span class="n" style="color: #333;">endo</span><span class="p">);</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1754" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1754
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<pre style="margin: 0;">+<span id="LC1754" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1755" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1755
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<pre style="margin: 0;">+<span id="LC1755" class="line" lang="c"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1756" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1756
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<pre style="margin: 0;">+<span id="LC1756" class="line" lang="c"> <span class="n" style="color: #333;">PyErr_SetString</span><span class="p">(</span><span class="n" style="color: #333;">PyExc_RuntimeError</span><span class="p">,</span> <span class="s" style="color: #d14;">"The end coordinate must be a number!"</span><span class="p">);</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1757" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1757
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<pre style="margin: 0;">+<span id="LC1757" class="line" lang="c"> <span class="k" style="font-weight: 600;">return</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC1758" class="line" lang="c"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC1759" class="line" lang="c"></span>
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<pre style="margin: 0;"> <span id="LC1760" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="n" style="color: #333;">endl</span> <span class="o" style="font-weight: 600;">==</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">long</span><span class="p">)</span> <span class="o" style="font-weight: 600;">-</span><span class="mi" style="color: #099;">1</span> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">tid</span> <span class="o" style="font-weight: 600;">!=</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">uint32_t</span><span class="p">)</span> <span class="o" style="font-weight: 600;">-</span><span class="mi" style="color: #099;">1</span><span class="p">)</span> <span class="n" style="color: #333;">endl</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">bw</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">cl</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">len</span><span class="p">[</span><span class="n" style="color: #333;">tid</span><span class="p">];</span></span>
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<pre style="margin: 0;"> <span id="LC1761" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="n" style="color: #333;">tid</span> <span class="o" style="font-weight: 600;">==</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">uint32_t</span><span class="p">)</span> <span class="o" style="font-weight: 600;">-</span><span class="mi" style="color: #099;">1</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">startl</span> <span class="o" style="font-weight: 600;">></span> <span class="n" style="color: #333;">end</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">endl</span> <span class="o" style="font-weight: 600;">></span> <span class="n" style="color: #333;">end</span><span class="p">)</span> <span class="p">{</span></span>
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<pre style="margin: 0;"> <span id="LC1762" class="line" lang="c"> <span class="n" style="color: #333;">PyErr_SetString</span><span class="p">(</span><span class="n" style="color: #333;">PyExc_RuntimeError</span><span class="p">,</span> <span class="s" style="color: #d14;">"Invalid interval bounds!"</span><span class="p">);</span></span>
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<a href="https://salsa.debian.org/med-team/pybigwig/compare/681380e8787e31eac99595322c89261a699d3c22...78726b0a6f508ca8ebb9d78dd8100319496dcae4#a53acb6d60ac6a063886d0a7a1dd8f7184e6f980"><strong>pyBigWig.h</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2,7 +2,7 @@</td>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include <structmember.h></span></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include "bigWig.h"</span></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="c"></span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#define pyBigWigVersion "0.3.1<span class="idiff left right">1</span>"</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#define pyBigWigVersion "0.3.1<span class="idiff left right">2</span>"</span></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="c"></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="c"><span class="k" style="font-weight: 600;">typedef</span> <span class="k" style="font-weight: 600;">struct</span> <span class="p">{</span></span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="c"> <span class="n" style="color: #333;">PyObject_HEAD</span></span>
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<a href="https://salsa.debian.org/med-team/pybigwig/compare/681380e8787e31eac99595322c89261a699d3c22...78726b0a6f508ca8ebb9d78dd8100319496dcae4#f5d848e7beeea87ec3202f19ebf1bce809c843bd"><strong>pyBigWigTest/test.py</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3,6 +3,7 @@ import tempfile</td>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">os</span></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">sys</span></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">hashlib</span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">numpy</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">np</span></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="python"><span class="k" style="font-weight: 600;">class</span> <span class="nc" style="color: #458; font-weight: 600;">TestRemote</span><span class="p">():</span></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="python"> <span class="n" style="color: #333;">fname</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"http://raw.githubusercontent.com/dpryan79/pyBigWig/master/pyBigWigTest/test.bw"</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -28,14 +29,17 @@ class TestRemote():</td>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span><span class="p">(</span><span class="n" style="color: #333;">bw</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">stats</span><span class="p">(</span><span class="s" style="color: #d14;">"1"</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="p">[</span><span class="mf" style="color: #099;">0.2000000054637591</span><span class="p">])</span></span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span><span class="p">(</span><span class="n" style="color: #333;">bw</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">stats</span><span class="p">(</span><span class="s" style="color: #d14;">"1"</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="nb" style="color: #0086b3;">type</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"max"</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="p">[</span><span class="mf" style="color: #099;">0.30000001192092896</span><span class="p">])</span></span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span><span class="p">(</span><span class="n" style="color: #333;">bw</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">stats</span><span class="p">(</span><span class="s" style="color: #d14;">"1"</span><span class="p">,</span><span class="mi" style="color: #099;">99</span><span class="p">,</span><span class="mi" style="color: #099;">200</span><span class="p">,</span> <span class="nb" style="color: #0086b3;">type</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"max"</span><span class="p">,</span> <span class="n" style="color: #333;">nBins</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">2</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="p">[</span><span class="mf" style="color: #099;">1.399999976158142</span><span class="p">,</span> <span class="mf" style="color: #099;">1.5</span><span class="p">])</span></span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span><span class="p">(</span><span class="n" style="color: #333;">bw</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">stats</span><span class="p">(</span><span class="s" style="color: #d14;">"1"</span><span class="p">,</span><span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">int64</span><span class="p">(</span><span class="mi" style="color: #099;">99</span><span class="p">),</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">int64</span><span class="p">(</span><span class="mi" style="color: #099;">200</span><span class="p">),</span> <span class="nb" style="color: #0086b3;">type</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"max"</span><span class="p">,</span> <span class="n" style="color: #333;">nBins</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">2</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="p">[</span><span class="mf" style="color: #099;">1.399999976158142</span><span class="p">,</span> <span class="mf" style="color: #099;">1.5</span><span class="p">])</span></span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span><span class="p">(</span><span class="n" style="color: #333;">bw</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">stats</span><span class="p">(</span><span class="s" style="color: #d14;">"1"</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="p">[</span><span class="mf" style="color: #099;">1.3351851569281683</span><span class="p">])</span></span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">doValues</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">,</span> <span class="n" style="color: #333;">bw</span><span class="p">):</span></span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span><span class="p">(</span><span class="n" style="color: #333;">bw</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">values</span><span class="p">(</span><span class="s" style="color: #d14;">"1"</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="p">[</span><span class="mf" style="color: #099;">0.10000000149011612</span><span class="p">,</span> <span class="mf" style="color: #099;">0.20000000298023224</span><span class="p">,</span> <span class="mf" style="color: #099;">0.30000001192092896</span><span class="p">])</span></span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span><span class="p">(</span><span class="n" style="color: #333;">bw</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">values</span><span class="p">(</span><span class="s" style="color: #d14;">"1"</span><span class="p">,</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">int64</span><span class="p">(</span><span class="mi" style="color: #099;">0</span><span class="p">),</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">int64</span><span class="p">(</span><span class="mi" style="color: #099;">3</span><span class="p">))</span> <span class="o" style="font-weight: 600;">==</span> <span class="p">[</span><span class="mf" style="color: #099;">0.10000000149011612</span><span class="p">,</span> <span class="mf" style="color: #099;">0.20000000298023224</span><span class="p">,</span> <span class="mf" style="color: #099;">0.30000001192092896</span><span class="p">])</span></span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="python"> <span class="c" style="color: #998; font-style: italic;">#assert(bw.values("1", 0, 4) == [0.10000000149011612, 0.20000000298023224, 0.30000001192092896, 'nan'])</span></span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">doIntervals</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">,</span> <span class="n" style="color: #333;">bw</span><span class="p">):</span></span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span><span class="p">(</span><span class="n" style="color: #333;">bw</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">intervals</span><span class="p">(</span><span class="s" style="color: #d14;">"1"</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="p">((</span><span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mf" style="color: #099;">0.10000000149011612</span><span class="p">),</span> <span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">2</span><span class="p">,</span> <span class="mf" style="color: #099;">0.20000000298023224</span><span class="p">),</span> <span class="p">(</span><span class="mi" style="color: #099;">2</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="mf" style="color: #099;">0.30000001192092896</span><span class="p">)))</span></span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span><span class="p">(</span><span class="n" style="color: #333;">bw</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">intervals</span><span class="p">(</span><span class="s" style="color: #d14;">"1"</span><span class="p">,</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">int64</span><span class="p">(</span><span class="mi" style="color: #099;">0</span><span class="p">),</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">int64</span><span class="p">(</span><span class="mi" style="color: #099;">3</span><span class="p">))</span> <span class="o" style="font-weight: 600;">==</span> <span class="p">((</span><span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mf" style="color: #099;">0.10000000149011612</span><span class="p">),</span> <span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">2</span><span class="p">,</span> <span class="mf" style="color: #099;">0.20000000298023224</span><span class="p">),</span> <span class="p">(</span><span class="mi" style="color: #099;">2</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="mf" style="color: #099;">0.30000001192092896</span><span class="p">)))</span></span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span><span class="p">(</span><span class="n" style="color: #333;">bw</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">intervals</span><span class="p">(</span><span class="s" style="color: #d14;">"1"</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="p">((</span><span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mf" style="color: #099;">0.10000000149011612</span><span class="p">),</span> <span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">2</span><span class="p">,</span> <span class="mf" style="color: #099;">0.20000000298023224</span><span class="p">),</span> <span class="p">(</span><span class="mi" style="color: #099;">2</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">,</span> <span class="mf" style="color: #099;">0.30000001192092896</span><span class="p">),</span> <span class="p">(</span><span class="mi" style="color: #099;">100</span><span class="p">,</span> <span class="mi" style="color: #099;">150</span><span class="p">,</span> <span class="mf" style="color: #099;">1.399999976158142</span><span class="p">),</span> <span class="p">(</span><span class="mi" style="color: #099;">150</span><span class="p">,</span> <span class="mi" style="color: #099;">151</span><span class="p">,</span> <span class="mf" style="color: #099;">1.5</span><span class="p">)))</span></span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">doSum</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">,</span> <span class="n" style="color: #333;">bw</span><span class="p">):</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -161,7 +165,6 @@ class TestRemote():</td>
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165
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<pre style="margin: 0;"> <span id="LC165" class="line" lang="python"> <span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">remove</span><span class="p">(</span><span class="n" style="color: #333;">oname</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC166" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC167" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">doWriteNumpy</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">):</span></span>
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<pre style="margin: 0;">-<span id="LC164" class="line" lang="python"> <span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">numpy</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">np</span></span>
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<pre style="margin: 0;"> <span id="LC168" class="line" lang="python"> <span class="n" style="color: #333;">ofile</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">tempfile</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">NamedTemporaryFile</span><span class="p">(</span><span class="n" style="color: #333;">delete</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">False</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC169" class="line" lang="python"> <span class="n" style="color: #333;">oname</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">ofile</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">name</span></span>
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<pre style="margin: 0;"> <span id="LC170" class="line" lang="python"> <span class="n" style="color: #333;">ofile</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">close</span><span class="p">()</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -237,6 +240,8 @@ class TestBigBed():</td>
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237
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<pre style="margin: 0;"> <span id="LC240" class="line" lang="python"> <span class="n" style="color: #333;">o</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">bb</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">entries</span><span class="p">(</span><span class="s" style="color: #d14;">'chr1'</span><span class="p">,</span><span class="mi" style="color: #099;">10000000</span><span class="p">,</span><span class="mi" style="color: #099;">10020000</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC241" class="line" lang="python"> <span class="n" style="color: #333;">expected</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[(</span><span class="mi" style="color: #099;">10009333</span><span class="p">,</span> <span class="mi" style="color: #099;">10009640</span><span class="p">,</span> <span class="s" style="color: #d14;">'61035</span><span class="se" style="color: #d14;">\t</span><span class="s" style="color: #d14;">130</span><span class="se" style="color: #d14;">\t</span><span class="s" style="color: #d14;">-</span><span class="se" style="color: #d14;">\t</span><span class="s" style="color: #d14;">0.026</span><span class="se" style="color: #d14;">\t</span><span class="s" style="color: #d14;">0.42</span><span class="se" style="color: #d14;">\t</span><span class="s" style="color: #d14;">404'</span><span class="p">),</span> <span class="p">(</span><span class="mi" style="color: #099;">10014007</span><span class="p">,</span> <span class="mi" style="color: #099;">10014289</span><span class="p">,</span> <span class="s" style="color: #d14;">'61047</span><span class="se" style="color: #d14;">\t</span><span class="s" style="color: #d14;">136</span><span class="se" style="color: #d14;">\t</span><span class="s" style="color: #d14;">-</span><span class="se" style="color: #d14;">\t</span><span class="s" style="color: #d14;">0.029</span><span class="se" style="color: #d14;">\t</span><span class="s" style="color: #d14;">0.42</span><span class="se" style="color: #d14;">\t</span><span class="s" style="color: #d14;">404'</span><span class="p">),</span> <span class="p">(</span><span class="mi" style="color: #099;">10014373</span><span class="p">,</span> <span class="mi" style="color: #099;">10024307</span><span class="p">,</span> <span class="s" style="color: #d14;">'61048</span><span class="se" style="color: #d14;">\t</span><span class="s" style="color: #d14;">630</span><span class="se" style="color: #d14;">\t</span><span class="s" style="color: #d14;">-</span><span class="se" style="color: #d14;">\t</span><span class="s" style="color: #d14;">5.420</span><span class="se" style="color: #d14;">\t</span><span class="s" style="color: #d14;">0.00</span><span class="se" style="color: #d14;">\t</span><span class="s" style="color: #d14;">2672399'</span><span class="p">)]</span></span>
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<pre style="margin: 0;"> <span id="LC242" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span><span class="p">(</span><span class="n" style="color: #333;">o</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">expected</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC243" class="line" lang="python"> <span class="n" style="color: #333;">o</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">bb</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">entries</span><span class="p">(</span><span class="s" style="color: #d14;">'chr1'</span><span class="p">,</span><span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">int64</span><span class="p">(</span><span class="mi" style="color: #099;">10000000</span><span class="p">),</span><span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">int64</span><span class="p">(</span><span class="mi" style="color: #099;">10020000</span><span class="p">))</span></span>
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<pre style="margin: 0;">+<span id="LC244" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span><span class="p">(</span><span class="n" style="color: #333;">o</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">expected</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC245" class="line" lang="python"> <span class="n" style="color: #333;">bb</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">close</span><span class="p">()</span></span>
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<pre style="margin: 0;"> <span id="LC246" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC247" class="line" lang="python"><span class="k" style="font-weight: 600;">class</span> <span class="nc" style="color: #458; font-weight: 600;">TestNumpy</span><span class="p">():</span></span>
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<li id="8e2edce0d507e1297474f25c00cae94258db38d8">
<a href="https://salsa.debian.org/med-team/pybigwig/compare/681380e8787e31eac99595322c89261a699d3c22...78726b0a6f508ca8ebb9d78dd8100319496dcae4#8e2edce0d507e1297474f25c00cae94258db38d8"><strong>setup.py</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -15,7 +15,7 @@ srcs = [x for x in</td>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="python"> <span class="n" style="color: #333;">glob</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">glob</span><span class="p">(</span><span class="s" style="color: #d14;">"libBigWig/*.c"</span><span class="p">)]</span></span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="python"><span class="n" style="color: #333;">srcs</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">append</span><span class="p">(</span><span class="s" style="color: #d14;">"pyBigWig.c"</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="python"><span class="n" style="color: #333;">libs</span><span class="o" style="font-weight: 600;">=</span><span class="p">[</span><span class="s" style="color: #d14;">"m"</span><span class="p">,</span> <span class="s" style="color: #d14;">"z"</span><span class="p"><span class="idiff left">,</span></span><span class="idiff"> </span><span class="s" style="color: #d14;"><span class="idiff right">"curl"</span></span><span class="p">]</span></span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="python"><span class="n" style="color: #333;">libs</span><span class="o" style="font-weight: 600;">=</span><span class="p">[</span><span class="s" style="color: #d14;">"m"</span><span class="p">,</span> <span class="s" style="color: #d14;">"z"</span><span class="p">]</span></span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="python"><span class="c" style="color: #998; font-style: italic;"># do not link to python on mac, see https://github.com/deeptools/pyBigWig/issues/58</span></span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="python"><span class="k" style="font-weight: 600;">if</span> <span class="s" style="color: #d14;">'dynamic_lookup'</span> <span class="ow" style="font-weight: 600;">not</span> <span class="ow" style="font-weight: 600;">in</span> <span class="p">(</span><span class="n" style="color: #333;">sysconfig</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">get_config_var</span><span class="p">(</span><span class="s" style="color: #d14;">'LDSHARED'</span><span class="p">)</span> <span class="ow" style="font-weight: 600;">or</span> <span class="s" style="color: #d14;">''</span><span class="p">):</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -34,6 +34,7 @@ additional_libs = [sysconfig.get_config_var("LIBDIR"), sysconfig.get_config_var(</td>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="python"><span class="n" style="color: #333;">defines</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[]</span></span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="python"><span class="k" style="font-weight: 600;">try</span><span class="p">:</span></span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="python"> <span class="n" style="color: #333;">foo</span><span class="p">,</span> <span class="n" style="color: #333;">_</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">subprocess</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Popen</span><span class="p">([</span><span class="s" style="color: #d14;">'curl-config'</span><span class="p">,</span> <span class="s" style="color: #d14;">'--libs'</span><span class="p">],</span> <span class="n" style="color: #333;">stdout</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">subprocess</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">PIPE</span><span class="p">)</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">communicate</span><span class="p">()</span></span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="python"> <span class="n" style="color: #333;">libs</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">append</span><span class="p">(</span><span class="s" style="color: #d14;">"curl"</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="python"><span class="k" style="font-weight: 600;">except</span><span class="p">:</span></span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="python"> <span class="n" style="color: #333;">foo</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">''</span></span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="python"> <span class="n" style="color: #333;">defines</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">append</span><span class="p">((</span><span class="s" style="color: #d14;">'NOCURL'</span><span class="p">,</span> <span class="bp" style="color: #999;">None</span><span class="p">))</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -61,7 +62,7 @@ module1 = Extension('pyBigWig',</td>
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<pre style="margin: 0;"> <span id="LC62" class="line" lang="python"> <span class="n" style="color: #333;">include_dirs</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">include_dirs</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="python"><span class="n" style="color: #333;">setup</span><span class="p">(</span><span class="n" style="color: #333;">name</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">'pyBigWig'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC64" class="line" lang="python"> <span class="n" style="color: #333;">version</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">'0.3.1<span class="idiff left right">1</span>'</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="python"> <span class="n" style="color: #333;">version</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">'0.3.1<span class="idiff left right">2</span>'</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC66" class="line" lang="python"> <span class="n" style="color: #333;">description</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">'A package for accessing bigWig files using libBigWig'</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC67" class="line" lang="python"> <span class="n" style="color: #333;">author</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"Devon P. Ryan"</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC68" class="line" lang="python"> <span class="n" style="color: #333;">author_email</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"ryan@ie-freiburg.mpg.de"</span><span class="p">,</span></span>
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