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<h3>
Olivier Sallou pushed to branch master
at <a href="https://salsa.debian.org/med-team/igv">Debian Med / igv</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/commit/159487636c008f8b5d7a318e27836bf9ca278702">15948763</a></strong>
<div>
<span>by Olivier Sallou</span>
<i>at 2018-10-18T16:18:52Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">use debian htsjdk
</pre>
</li>
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<h4>1 changed file:</h4>
<ul>
<li class="file-stats">
<a href="#37e490b5584c8e52c9983093facdd5c4adde4c25">
debian/patches/fix_gradle.patch
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="37e490b5584c8e52c9983093facdd5c4adde4c25">
<a href="https://salsa.debian.org/med-team/igv/commit/159487636c008f8b5d7a318e27836bf9ca278702#37e490b5584c8e52c9983093facdd5c4adde4c25"><strong>debian/patches/fix_gradle.patch</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -34,7 +34,7 @@ Forwarded: no</td>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="diff"> sourceSets {</span>
</pre>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="diff"> main {</span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="diff"> java {</span>
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<pre style="margin: 0;">-<span id="LC37" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -45,6 +54,2<span class="idiff left right">7</span> @@</span></span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -45,6 +54,2<span class="idiff left right">8</span> @@</span></span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="diff"> dependencies {</span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="diff"> // Use the newer JIDE lib for Java 9 builds</span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="diff"> compile fileTree(dir: 'lib', include: '*.jar', exclude: 'jide-oss-3.5.5.jar') + fileTree(dir: 'lib_java9', include: '*.jar')</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="59" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="59" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -59,10 +59,11 @@ Forwarded: no</td>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ compile "org.apache.logging.log4j:log4j-1.2-api:debian"</span></span>
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ compile "org.apache.logging.log4j:log4j-core:debian"</span></span>
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<td class="diff-line-num old_line" data-linenumber="61" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ compile "org.swinglabs:swing-layout:debian"</span></span>
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ compile "com.github.samtools:htsjdk:debian"</span></span>
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="diff"> testCompile fileTree(dir: 'test/lib', include: '*.jar')</span>
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="diff"> }</span>
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC65" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -93,12 +12<span class="idiff left right">3</span>,13 @@</span></span>
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -93,12 +12<span class="idiff left right">4</span>,13 @@</span></span>
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<pre style="margin: 0;"> <span id="LC67" class="line" lang="diff"> }</span>
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<pre style="margin: 0;"> <span id="LC68" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC69" class="line" lang="diff"> compileJava {</span>
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