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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/igv">Debian Med / igv</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/commit/b210ec35e017820355e9fefc1a3fc02ba695dc3e">b210ec35</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-18T18:21:33Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Maintain Files-Excluded: Do not mention files not in tarball any more, remove more unused jars
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/commit/819a716ba38a32d608aadf1b8b973259b651a56b">819a716b</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-18T18:21:33Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.4.14+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/commit/ca2037eb5075b7f50961313e9e2fc7e21ce3687e">ca2037eb</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-18T18:21:33Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">No team upload
</pre>
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<h4>8 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
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<li class="file-stats">
<a href="#0c74c424bec35f203729016ea2fef09bb8655ae9">
<span class="deleted-file">
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lib/ant.jar
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<li class="file-stats">
<a href="#bf28cea7ddcd7e329662bfcab817607ba3a2d645">
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lib/htsjdk-2.12.0-18-g20ee53e-SNAPSHOT.jar
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<a href="#8354e28ab9d206a0bd6cd0b56a22482119a9e47a">
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lib/picard-lib.jar
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<a href="#14018e46dcbd91fc3590ab4d893f211c7c12847a">
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lib/snappy-java-1.1.4.jar
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<a href="#cacd75fc780c4aa9e1a23ffe00de3894e94142da">
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test/lib/fest-Assert-1.2.jar
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<a href="#4fa6737d6df569e284afe45892285e02f4e6a6c6">
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test/lib/junit-4.10.jar
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/igv/compare/159487636c008f8b5d7a318e27836bf9ca278702...ca2037eb5075b7f50961313e9e2fc7e21ce3687e#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">igv (2.4.14+dfsg-1) UNRELEASED; urgency=medium</span>
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> [ Dylan Aïssi ]</span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext"> * Team upload.</span>
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> * Add more libraries deps in classpath</span>
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<td class="diff-line-num old_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"> (LP: #1400648, #1476650, #1602389)</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -14,7 +13,10 @@ igv (2.4.14+dfsg-1) UNRELEASED; urgency=medium</td>
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> (Thanks for the hint to Tony Travis <tony.travis@minke-informatics.co.uk>)</span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> (LP: #1797819)</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> * XS-Autobuild: yes</span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext"> * d/copyright: jlfgr is now available as source code not binary jar</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> * d/copyright: Maintain Files-Excluded:</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> - jlfgr is now available as source code not binary jar</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> - do not mention files not in tarball any more</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> - remove more unused jars</span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> [ Olivier Sallou]</span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> * d/patches/fix_gradle.patch: adapt build to Debian</span>
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<li id="adb7f75f79e3bb85eb62912a2904c5d24af878fb">
<a href="https://salsa.debian.org/med-team/igv/compare/159487636c008f8b5d7a318e27836bf9ca278702...ca2037eb5075b7f50961313e9e2fc7e21ce3687e#adb7f75f79e3bb85eb62912a2904c5d24af878fb"><strong>debian/copyright</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">Source: http://www.broadinstitute.org/igv/projects/downloads</span>
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3
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3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">Files-Excluded:</span>
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4
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext"> igv.jar</span>
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5
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> batik-codec.jar</span>
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6
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> igv.bat</span>
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7
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> igv.command</span>
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8
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> lib/Jama-*</span>
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<td class="diff-line-num old_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
9
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> lib/batik*</span>
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10
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5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"> lib/commons*</span>
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11
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext"> lib/concurrent*</span>
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12
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6
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"> lib/guava*</span>
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13
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"> <span class="idiff left right">lib/jargs*</span></span>
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7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> <span class="idiff left right">*/htsjdk*.jar</span></span>
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14
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8
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> lib/jcommon*</span>
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15
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9
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> lib/jfreechart*</span>
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16
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext"> <span class="idiff left right">lib/junit-*</span></span>
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10
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> <span class="idiff left right">*/junit-*.jar</span></span>
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17
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11
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> lib/log4j-*</span>
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18
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext"> lib/sam-*</span>
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12
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> */picard-*.jar</span>
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13
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> */snappy-java-*.jar</span>
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19
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14
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> lib/swing-layout-*</span>
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20
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext"> lib/xml-apis-*</span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="plaintext"> lib/bcprov*</span>
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22
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="plaintext"> lib/jgrapht*</span>
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23
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15
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> lib/jide-oss-*</span>
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24
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="plaintext"> lib/cofoja*</span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="plaintext"> lib/mysql-connector*</span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> lib/gson*</span>
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="plaintext"> <span class="idiff left right">test/lib</span>/ant.jar</span>
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="plaintext"> <span class="idiff left right">test/lib/fest-a</span>ssert*.jar</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> <span class="idiff left right">*</span>/ant.jar</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> <span class="idiff left right">*/fest-A</span>ssert*.jar</span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> test/lib/fest-util*.jar</span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> test/lib/fest-reflect*.jar</span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext">Disclaimer: This package is not part of the Debian operating system.</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -36,7 +26,7 @@ Disclaimer: This package is not part of the Debian operating system.</td>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"> for non-free packages (such as our bug tracking system and mailing lists).</span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext">Files: *</span>
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="plaintext">Copyright: 2007-201<span class="idiff left right">5</span> Broad Institute</span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext">Copyright: 2007-201<span class="idiff left right">8</span> Broad Institute</span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext">License: MIT</span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR</span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -95,7 +85,10 @@ License: other</td>
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<pre style="margin: 0;"> <span id="LC85" class="line" lang="plaintext"> such jurisdiction.</span>
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<pre style="margin: 0;"> <span id="LC86" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC87" class="line" lang="plaintext">Files: debian/*</span>
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<pre style="margin: 0;">-<span id="LC98" class="line" lang="plaintext">Copyright: 2010 Shaun Jackman <sjackman@debian.org></span>
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<pre style="margin: 0;">+<span id="LC88" class="line" lang="plaintext">Copyright: 2010-2011 Shaun Jackman <sjackman@debian.org></span>
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<pre style="margin: 0;">+<span id="LC89" class="line" lang="plaintext"> 2011 Charles Plessy <plessy@debian.org></span>
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<td class="diff-line-num new new_line" data-linenumber="90" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
90
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<pre style="margin: 0;">+<span id="LC90" class="line" lang="plaintext"> 2013-2018 Olivier Sallou <osallou@debian.org>,</span>
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<td class="diff-line-num new old_line" data-linenumber="99" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="91" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
91
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<pre style="margin: 0;">+<span id="LC91" class="line" lang="plaintext"> Andreas Tille <tille@debian.org></span>
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92
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<pre style="margin: 0;"> <span id="LC92" class="line" lang="plaintext">License: ISC</span>
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100
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93
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<pre style="margin: 0;"> <span id="LC93" class="line" lang="plaintext"> Permission to use, copy, modify, and/or distribute this software for any</span>
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101
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94
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<pre style="margin: 0;"> <span id="LC94" class="line" lang="plaintext"> purpose with or without fee is hereby granted, provided that the above</span>
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