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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/libedlib">Debian Med / libedlib</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/libedlib/commit/77cf950b226132c33f1795ae1303af020008f651">77cf950b</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-19T05:50:10Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix symbols file
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libedlib/commit/9f6d92492c3ab8684278ffecb916cc0940724dc3">9f6d9249</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-19T05:50:59Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Standards-Version: 4.2.1
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libedlib/commit/7ac31d695507b073a980ac20ffcf702976811fa4">7ac31d69</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-19T06:03:41Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Run build time tests
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libedlib/commit/4576617c6c2c36de70af57250223d5665e78985c">4576617c</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-19T06:14:11Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add autopkgtest
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libedlib/commit/d90e929ce737f5523d21146ffc4c00c369f8e1b4">d90e929c</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-19T06:15:03Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Document how to test the package
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libedlib/commit/1ddc2767cfe08bac51c92c86cd37224a41b255d8">1ddc2767</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-19T06:17:02Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
</li>
</ul>
<h4>9 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#f6a99a1e522a0f5ca122fd9818a9d8536ea59942">
<span class="new-file">
+
debian/README.test
</span>
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#59378b4b5c56cfc778772d1c05cf3709178e94e1">
<span class="new-file">
+
debian/edlib-aligner.docs
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<li class="file-stats">
<a href="#94b59ac05f27c270d2f775aff2351ab6b63b5fc0">
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debian/edlib-aligner.examples
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<li class="file-stats">
<a href="#5cbe6d9e777c9b8458299388d351951389bc887c">
debian/libedlib0.symbols
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<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<li class="file-stats">
<a href="#83223a554d33ba7e1888274ff8ac43adb8147ba0">
<span class="new-file">
+
debian/tests/control
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<li class="file-stats">
<a href="#8c77cc51b09ef1f7b294222180bcdb53ebb70e2f">
<span class="new-file">
+
debian/tests/run-unit-test
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</ul>
<h4>Changes:</h4>
<li id="f6a99a1e522a0f5ca122fd9818a9d8536ea59942">
<a href="https://salsa.debian.org/med-team/libedlib/compare/896739b72a00d0b2a2641644755d654c2dd6fe46...1ddc2767cfe08bac51c92c86cd37224a41b255d8#f6a99a1e522a0f5ca122fd9818a9d8536ea59942"><strong>debian/README.test</strong></a>
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1" class="line" lang="php"><span class="nx">Notes</span> <span class="nx">on</span> <span class="nx">how</span> <span class="k" style="font-weight: 600;">this</span> <span class="nx">package</span> <span class="nx">can</span> <span class="nx">be</span> <span class="nx">tested</span><span class="o" style="font-weight: 600;">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="php"><span class="err" style="color: #a61717; background-color: #e3d2d2;">────────────────────────────────────────</span></span>
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<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
3
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC3" class="line" lang="php"></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC4" class="line" lang="php"><span class="nx">This</span> <span class="nx">package</span> <span class="nx">can</span> <span class="nx">be</span> <span class="nx">tested</span> <span class="nx">by</span> <span class="nx">running</span> <span class="nx">the</span> <span class="nx">provided</span> <span class="nx">test</span><span class="o" style="font-weight: 600;">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
5
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="php"></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="php"> <span class="nx">sh</span> <span class="nx">run</span><span class="o" style="font-weight: 600;">-</span><span class="nx">unit</span><span class="o" style="font-weight: 600;">-</span><span class="nx">test</span></span>
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<td class="diff-line-num new new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="php"></span>
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<td class="diff-line-num new new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC8" class="line" lang="php"><span class="nx">in</span> <span class="nx">order</span> <span class="nx">to</span> <span class="nx">confirm</span> <span class="nx">its</span> <span class="nx">integrity</span><span class="o" style="font-weight: 600;">.</span></span></pre>
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</li>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/libedlib/compare/896739b72a00d0b2a2641644755d654c2dd6fe46...1ddc2767cfe08bac51c92c86cd37224a41b255d8#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">libedlib (1.2.3-2) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Fix symbols file</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> Closes: #905386</span>
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<td class="diff-line-num new new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> * Standards-Version: 4.2.1</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> * Run build time tests</span>
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<td class="diff-line-num new new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> * Add autopkgtest</span>
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<td class="diff-line-num new new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Fri, 19 Oct 2018 08:15:14 +0200</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">libedlib (1.2.3-1) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> * Initial release (Closes: #901184)</span>
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<a href="https://salsa.debian.org/med-team/libedlib/compare/896739b72a00d0b2a2641644755d654c2dd6fe46...1ddc2767cfe08bac51c92c86cd37224a41b255d8#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -7,7 +7,7 @@ Build-Depends: debhelper (>= 11~),</td>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> cmake,</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> d-shlibs,</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> rename</span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">1.4</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">2.1</span></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/libedlib-dev</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/libedlib-dev.git</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext">Homepage: https://github.com/Martinsos/edlib</span>
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<a href="https://salsa.debian.org/med-team/libedlib/compare/896739b72a00d0b2a2641644755d654c2dd6fe46...1ddc2767cfe08bac51c92c86cd37224a41b255d8#59378b4b5c56cfc778772d1c05cf3709178e94e1"><strong>debian/edlib-aligner.docs</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">debian/tests/run-unit-test</span></pre>
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<a href="https://salsa.debian.org/med-team/libedlib/compare/896739b72a00d0b2a2641644755d654c2dd6fe46...1ddc2767cfe08bac51c92c86cd37224a41b255d8#94b59ac05f27c270d2f775aff2351ab6b63b5fc0"><strong>debian/edlib-aligner.examples</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">apps/aligner/test_data</span></pre>
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<a href="https://salsa.debian.org/med-team/libedlib/compare/896739b72a00d0b2a2641644755d654c2dd6fe46...1ddc2767cfe08bac51c92c86cd37224a41b255d8#5cbe6d9e777c9b8458299388d351951389bc887c"><strong>debian/libedlib0.symbols</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2,7 +2,7 @@ libedlib.so.0 libedlib0 #MINVER#</td>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"> _ZN18EqualityDefinitionC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPK17EdlibEqualityPairi@Base 1.2.3</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> _ZN18EqualityDefinitionC2ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPK17EdlibEqualityPairi@Base 1.2.3</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> _ZNSt6vectorIcSaIcEE12emplace_backIJcEEEvDpOT_@Base 1.2.3</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> _ZNSt6vectorIiSaIiEE1<span class="idiff left right">2emplace_backIJiEEEv</span>DpOT_@Base 1.2.3</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> _ZNSt6vectorIiSaIiEE1<span class="idiff left right">7_M_realloc_insertIJiEEEvN9__gnu_cxx17__normal_iteratorIPiS1_EE</span>DpOT_@Base 1.2.3</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"> edlibAlign@Base 1.2.3</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> edlibAlignmentToCigar@Base 1.2.3</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> edlibDefaultAlignConfig@Base 1.2.3</span>
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<a href="https://salsa.debian.org/med-team/libedlib/compare/896739b72a00d0b2a2641644755d654c2dd6fe46...1ddc2767cfe08bac51c92c86cd37224a41b255d8#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -21,3 +21,9 @@ override_dh_install:</td>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> --exclude-la \</span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> --movedev debian/tmp/usr/include/* usr/include \</span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> debian/tmp/usr/lib/*.so</span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext">override_dh_auto_test:</span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext">ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))</span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext"> `find . -name edlib-aligner` -p apps/aligner/test_data/query.fasta apps/aligner/test_data/target.fasta</span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext"> `find . -name runTests`</span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext">endif</span></pre>
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<a href="https://salsa.debian.org/med-team/libedlib/compare/896739b72a00d0b2a2641644755d654c2dd6fe46...1ddc2767cfe08bac51c92c86cd37224a41b255d8#83223a554d33ba7e1888274ff8ac43adb8147ba0"><strong>debian/tests/control</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Tests: run-unit-test</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">Depends: @</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">Restrictions: allow-stderr</span></pre>
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<a href="https://salsa.debian.org/med-team/libedlib/compare/896739b72a00d0b2a2641644755d654c2dd6fe46...1ddc2767cfe08bac51c92c86cd37224a41b255d8#8c77cc51b09ef1f7b294222180bcdb53ebb70e2f"><strong>debian/tests/run-unit-test</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#!/bin/bash</span></span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="shell"><span class="nb" style="color: #0086b3;">set</span> <span class="nt" style="color: navy;">-e</span></span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="shell"></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="shell"><span class="nv" style="color: teal;">pkg</span><span class="o" style="font-weight: 600;">=</span>edlib-aligner</span>
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5
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="shell"></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="shell"><span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">[</span> <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: teal;">$AUTOPKGTEST_TMP</span><span class="s2" style="color: #d14;">"</span> <span class="o" style="font-weight: 600;">=</span> <span class="s2" style="color: #d14;">""</span> <span class="o" style="font-weight: 600;">]</span> <span class="p">;</span> <span class="k" style="font-weight: 600;">then</span></span>
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7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span><span class="nv" style="color: teal;">AUTOPKGTEST_TMP</span><span class="o" style="font-weight: 600;">=</span><span class="sb" style="color: #d14;">`</span><span class="nb" style="color: #0086b3;">mktemp</span> <span class="nt" style="color: navy;">-d</span> /tmp/<span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: teal;">pkg</span><span class="k" style="font-weight: 600;">}</span><span class="nt" style="color: navy;">-test</span>.XXXXXX<span class="sb" style="color: #d14;">`</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="shell"> <span class="nb" style="color: #0086b3;">trap</span> <span class="s2" style="color: #d14;">"rm -rf </span><span class="nv" style="color: teal;">$AUTOPKGTEST_TMP</span><span class="s2" style="color: #d14;">"</span> 0 INT QUIT ABRT PIPE TERM</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="shell"><span class="k" style="font-weight: 600;">fi</span></span>
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10
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="shell"></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cp</span> <span class="nt" style="color: navy;">-a</span> /usr/share/doc/<span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: teal;">pkg</span><span class="k" style="font-weight: 600;">}</span>/examples/<span class="k" style="font-weight: 600;">*</span> <span class="nv" style="color: teal;">$AUTOPKGTEST_TMP</span></span>
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12
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="shell"></span>
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<td class="diff-line-num new new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
13
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cd</span> <span class="nv" style="color: teal;">$AUTOPKGTEST_TMP</span></span>
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14
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="shell"></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="shell">edlib-aligner <span class="nt" style="color: navy;">-p</span> test_data/query.fasta test_data/target.fasta</span></pre>
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