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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/pbseqlib">Debian Med / pbseqlib</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbseqlib/commit/98e4d2a63681a8514082310f4da76db798948958">98e4d2a6</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-24T11:50:14Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Install pkg-config file for libblasr
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbseqlib/commit/e01fcecc8e9092c995c0bd1082bbbcd39404251e">e01fcecc</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-24T12:41:01Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">/usr/include is sufficient, subdirs will be specified in individual inlcude statements
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbseqlib/commit/cd06855619d48b633beed01fbc087b95e616fcc3">cd068556</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-24T12:58:25Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add missing Depends
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbseqlib/commit/15c44a81b11b3b370941b54c8f88e2e21527737a">15c44a81</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-24T13:27:34Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Finally we seem to need  -I${includedir}/pbseq
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbseqlib/commit/81a1aa926e36beb52efc692d42d8a2764b929b6f">81a1aa92</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-24T14:11:49Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Adjust dependencies
</pre>
</li>
</ul>
<h4>5 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#3cdbbdbd954f945240928993c6d0c076ca6af3c7">
debian/libblasr-dev.install
</a>
</li>
<li class="file-stats">
<a href="#44d60421af4f90a53ab2bcc5c2ea29fc9d502c92">
<span class="new-file">
+
debian/libblasr.pc
</span>
</a>
</li>
<li class="file-stats">
<a href="#0ec77f9bc339988c8758b3dcb84df6a3280bfeb5">
debian/libpbdata-dev.install
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/pbseqlib/compare/077a8e8c5e87f7986d34fc96f205fcbf82d9f588...81a1aa926e36beb52efc692d42d8a2764b929b6f#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">pbseqlib (5.3.1+dfsg-2) UNRELEASED; urgency=medium</span>
</pre>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
</pre>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">  * Install pkg-config file for libblasr</span>
</pre>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"></span>
</pre>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org>  Wed, 24 Oct 2018 10:12:31 +0200</span>
</pre>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"></span>
</pre>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">pbseqlib (5.3.1+dfsg-1) unstable; urgency=medium</span>
</pre>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"></span>
</pre>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">  [ Andreas Tille ]</span>
</pre>
</td>
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</table>
<br>
</li>
<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/pbseqlib/compare/077a8e8c5e87f7986d34fc96f205fcbf82d9f588...81a1aa926e36beb52efc692d42d8a2764b929b6f#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
<hr>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="76" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="76" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -76,6 +76,7 @@ Architecture: any</td>
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<pre style="margin: 0;"> <span id="LC76" class="line" lang="plaintext">Multi-Arch: same</span>
</pre>
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<pre style="margin: 0;"> <span id="LC77" class="line" lang="plaintext">Section: libdevel</span>
</pre>
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<pre style="margin: 0;"> <span id="LC78" class="line" lang="plaintext">Depends: libpbihdf (= ${binary:Version}),</span>
</pre>
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<pre style="margin: 0;">+<span id="LC79" class="line" lang="plaintext">         libhdf5-dev,</span>
</pre>
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<pre style="margin: 0;"> <span id="LC80" class="line" lang="plaintext">         ${misc:Depends}</span>
</pre>
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<pre style="margin: 0;"> <span id="LC81" class="line" lang="plaintext">Description: tools for handling PacBio hdf5 files (development files)</span>
</pre>
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<pre style="margin: 0;"> <span id="LC82" class="line" lang="plaintext"> Blasr_libcpp is a library used by blasr and other executables such as</span>
</pre>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -104,6 +105,7 @@ Architecture: any</td>
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<pre style="margin: 0;"> <span id="LC105" class="line" lang="plaintext">Multi-Arch: same</span>
</pre>
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105
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106
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<pre style="margin: 0;"> <span id="LC106" class="line" lang="plaintext">Section: libdevel</span>
</pre>
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<pre style="margin: 0;"> <span id="LC107" class="line" lang="plaintext">Depends: libblasr (= ${binary:Version}),</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="107" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
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<td class="diff-line-num new new_line" data-linenumber="108" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC108" class="line" lang="plaintext">         libpbdata-dev (= ${binary:Version}),</span>
</pre>
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<pre style="margin: 0;"> <span id="LC109" class="line" lang="plaintext">         ${misc:Depends}</span>
</pre>
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<pre style="margin: 0;"> <span id="LC110" class="line" lang="plaintext">Description: tools for aligning PacBio reads to target sequences (development files)</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="109" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC111" class="line" lang="plaintext"> Blasr_libcpp is a library used by blasr and other executables such as</span>
</pre>
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<br>
</li>
<li id="3cdbbdbd954f945240928993c6d0c076ca6af3c7">
<a href="https://salsa.debian.org/med-team/pbseqlib/compare/077a8e8c5e87f7986d34fc96f205fcbf82d9f588...81a1aa926e36beb52efc692d42d8a2764b929b6f#3cdbbdbd954f945240928993c6d0c076ca6af3c7"><strong>debian/libblasr-dev.install</strong></a>
<hr>
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1
</td>
<td class="diff-line-num new_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC1" class="line" lang="php"><span class="c1" style="color: #998; font-style: italic;">#!/usr/bin/dh-exec</span></span>
</pre>
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2
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="php"><span class="nx">alignment</span><span class="o" style="font-weight: 600;">/</span><span class="nx">libblasr</span><span class="o" style="font-weight: 600;">.</span><span class="nx">a</span>    <span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">lib</span><span class="o" style="font-weight: 600;">/</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">$</span><span class="p">{</span><span class="nx">DEB_HOST_MULTIARCH</span><span class="p">}</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
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<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="php"><span class="nx">debian</span><span class="o" style="font-weight: 600;">/*.</span><span class="nx">pc</span>             <span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">lib</span><span class="o" style="font-weight: 600;">/</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">$</span><span class="p">{</span><span class="nx">DEB_HOST_MULTIARCH</span><span class="p">}</span><span class="o" style="font-weight: 600;">/</span><span class="nx">pkgconfig</span></span></pre>
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</table>
<br>
</li>
<li id="44d60421af4f90a53ab2bcc5c2ea29fc9d502c92">
<a href="https://salsa.debian.org/med-team/pbseqlib/compare/077a8e8c5e87f7986d34fc96f205fcbf82d9f588...81a1aa926e36beb52efc692d42d8a2764b929b6f#44d60421af4f90a53ab2bcc5c2ea29fc9d502c92"><strong>debian/libblasr.pc</strong></a>
<hr>
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<td class="diff-line-num new new_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">prefix=/usr</span>
</pre>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">exec_prefix=${prefix}</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">includedir=/usr/include</span>
</pre>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
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<td class="diff-line-num new new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">Name: libblasr</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
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<td class="diff-line-num new new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">URL: https://github.com/PacificBiosciences/blasr_libcpp</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
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<td class="diff-line-num new new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">Description: tools for aligning PacBio reads to target sequences</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">Version: 5.3.1</span>
</pre>
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9
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext">Libs: -lblasr</span>
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10
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext">Cflags: -I${includedir}/pbseq -I${includedir}/pbseq/pbdata/</span></pre>
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</li>
<li id="0ec77f9bc339988c8758b3dcb84df6a3280bfeb5">
<a href="https://salsa.debian.org/med-team/pbseqlib/compare/077a8e8c5e87f7986d34fc96f205fcbf82d9f588...81a1aa926e36beb52efc692d42d8a2764b929b6f#0ec77f9bc339988c8758b3dcb84df6a3280bfeb5"><strong>debian/libpbdata-dev.install</strong></a>
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1
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="php"><span class="c1" style="color: #998; font-style: italic;">#!/usr/bin/dh-exec</span></span>
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2
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="php"><span class="nx">pbdata</span><span class="o" style="font-weight: 600;">/</span><span class="nx">libpbdata</span><span class="o" style="font-weight: 600;">.</span><span class="nx">a</span><span class="idiff left right"> </span><span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">lib</span><span class="o" style="font-weight: 600;">/</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">$</span><span class="p">{</span><span class="nx">DEB_HOST_MULTIARCH</span><span class="p">}</span></span></pre>
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<td class="diff-line-num new new_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="php"><span class="nx">pbdata</span><span class="o" style="font-weight: 600;">/</span><span class="nx">libpbdata</span><span class="o" style="font-weight: 600;">.</span><span class="nx">a</span><span class="idiff left right">       </span><span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">lib</span><span class="o" style="font-weight: 600;">/</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">$</span><span class="p">{</span><span class="nx">DEB_HOST_MULTIARCH</span><span class="p">}</span></span></pre>
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