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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/populations">Debian Med / populations</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/populations/commit/7c62e8773d0e61f7d25ab58b9297f9f08aad45f9">7c62e877</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-24T12:55:46Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add watch file
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/populations/commit/d89daa98ee7a8a0bf9dd38c9a1783453caec2fea">d89daa98</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-24T12:56:39Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update source download, no files to exclude from source tarball
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/populations/commit/7e08aa35c5158ccf54ae2aba1111800eeecb73c4">7e08aa35</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-24T12:57:25Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debhelper 11
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/populations/commit/344d06dcf2015fbec479a751aa8974bdd34b9d90">344d06dc</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-24T12:58:27Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Point Vcs fields to salsa.debian.org
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/populations/commit/5791166e470f2c9c6d3e7f2418afdadc18032442">5791166e</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-24T12:58:27Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Standards-Version: 4.2.1
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/populations/commit/2566c41221ee2cae12e0eff3f7f142baf281ff96">2566c412</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-24T13:13:17Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Spelling
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/populations/commit/3e6743e619ab8dd37f9572ea37e1156f1e77a63d">3e6743e6</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-24T13:16:27Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">DEP3
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/populations/commit/c66c8daff8c9e44a6bfd2e74af99c5be6c6f6c27">c66c8daf</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-24T13:19:58Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
</li>
</ul>
<h4>8 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
debian/compat
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
</a>
</li>
<li class="file-stats">
<a href="#e7add06914675837379e9dd08000414ebb39a4b6">
debian/manpage.xml
</a>
</li>
<li class="file-stats">
<a href="#738712798a018d6dd2b8e5cac27b9cf7cc4b7a48">
debian/patches/fix-ftbfs-gcc-4.7-667327.patch
</a>
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<li class="file-stats">
<a href="#2ccb4df5273befd58d6563b7936f2ced85b7397d">
debian/populations.1
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<li class="file-stats">
<a href="#68ef9f98c01c7eecd4c605cc26048a06f3304b79">
<span class="new-file">
+
debian/watch
</span>
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/populations/compare/086c47e87d33b66eca1cc53be2cd46106981d882...c66c8daff8c9e44a6bfd2e74af99c5be6c6f6c27#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">populations (1.2.33+svn0120106+dfsg-2) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Team upload.</span>
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<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * Add watch file</span>
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<td class="diff-line-num new new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> * debhelper 11</span>
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<td class="diff-line-num new new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> * Point Vcs fields to salsa.debian.org</span>
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<td class="diff-line-num new new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> * Standards-Version: 4.2.1</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Wed, 24 Oct 2018 15:16:40 +0200</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"></span>
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<td class="diff-line-num new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">populations (1.2.33+svn0120106+dfsg-1) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"></span>
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<td class="diff-line-num new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> [ Andreas Tille ]</span>
</pre>
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</li>
<li id="78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
<a href="https://salsa.debian.org/med-team/populations/compare/086c47e87d33b66eca1cc53be2cd46106981d882...c66c8daff8c9e44a6bfd2e74af99c5be6c6f6c27#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4"><strong>debian/compat</strong></a>
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1
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">1<span class="idiff left right">0</span></span></pre>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">1<span class="idiff left right">1</span></span></pre>
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<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/populations/compare/086c47e87d33b66eca1cc53be2cd46106981d882...c66c8daff8c9e44a6bfd2e74af99c5be6c6f6c27#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3,7 +3,7 @@ Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.</td>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">Uploaders: Georges Khaznadar <georgesk@ofset.org></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">Section: science</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">Priority: optional</span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext">Build-Depends: debhelper (>= 1<span class="idiff left right">0</span>),</span>
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6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">Build-Depends: debhelper (>= 1<span class="idiff left right">1~</span>),</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> cmake,</span>
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<td class="diff-line-num old_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
8
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> qt5-qmake,</span>
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<td class="diff-line-num old_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> qtbase5-dev,</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -18,9 +18,9 @@ Build-Depends: debhelper (>= 10),</td>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> libxext-dev,</span>
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<td class="diff-line-num old_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> libxrender-dev,</span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> zlib1g-dev</span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">1</span>.1</span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="plaintext">Vcs-Browser: https://<span class="idiff left right">anonscm.debian.org/cgit/debian-med/populations.git</span></span>
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<td class="diff-line-num old old_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="plaintext">Vcs-Git: https://<span class="idiff left right">anonscm.debian.org/git/debian-med</span>/populations.git</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">2</span>.1</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext">Vcs-Browser: https://<span class="idiff left right">salsa.debian.org/med-team/populations</span></span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext">Vcs-Git: https://<span class="idiff left right">salsa.debian.org/med-team</span>/populations.git</span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext">Homepage: http://www.bioinformatics.org/~tryphon/populations/</span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext">Package: populations</span>
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<li id="adb7f75f79e3bb85eb62912a2904c5d24af878fb">
<a href="https://salsa.debian.org/med-team/populations/compare/086c47e87d33b66eca1cc53be2cd46106981d882...c66c8daff8c9e44a6bfd2e74af99c5be6c6f6c27#adb7f75f79e3bb85eb62912a2904c5d24af878fb"><strong>debian/copyright</strong></a>
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">Upstream-Name: populations</span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext">Source: http://ppa.launchpad.net/olivier-langella/ppa/ubuntu/pool/main/p/populations/populations_1.2.32-2~maverick1.tar.gz</span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext">Files-Excluded: *.o</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> */a.out</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">Source: http://ppa.launchpad.net/olivier-langella/ppa/ubuntu/pool/main/p/populations/populations_1.2.33-2.tar.gz</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">Files: *</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">Copyright: 2005-2010 Olivier Langella <olivier.langella@laposte.net></span>
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<a href="https://salsa.debian.org/med-team/populations/compare/086c47e87d33b66eca1cc53be2cd46106981d882...c66c8daff8c9e44a6bfd2e74af99c5be6c6f6c27#e7add06914675837379e9dd08000414ebb39a4b6"><strong>debian/manpage.xml</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -106,7 +106,7 @@ man(1), man(7), http://www.tldp.org/HOWTO/Man-Page/</td>
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<pre style="margin: 0;"> <span id="LC106" class="line" lang="xml"> <span class="nt" style="color: navy;"><cmdsynopsis></span></span>
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<pre style="margin: 0;"> <span id="LC107" class="line" lang="xml"> <span class="nt" style="color: navy;"><command></span><span class="ni" style="color: purple;">&dhpackage;</span><span class="nt" style="color: navy;"></command></span></span>
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<pre style="margin: 0;"> <span id="LC108" class="line" lang="xml"> <span class="nt" style="color: navy;"><arg><option><replaceable></span>name_of_input_file<span class="nt" style="color: navy;"></replaceable></option></arg></span> <span class="nt" style="color: navy;"><arg><option><replaceable></span>option<span class="nt" style="color: navy;"></replaceable></option></arg></span> <span class="nt" style="color: navy;"></cmdsynopsis></span></span>
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<pre style="margin: 0;">-<span id="LC109" class="line" lang="xml"> <span class="nt" style="color: navy;"><para></span>You can use <span class="nt" style="color: navy;"><command></span><span class="ni" style="color: purple;">&dhpackage;</span><span class="nt" style="color: navy;"></command></span> as a command line program<span class="idiff left right">m</span> (very useful for batch treatment) to infer phylogenetic trees.<span class="nt" style="color: navy;"></para></span></span>
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<pre style="margin: 0;">+<span id="LC109" class="line" lang="xml"> <span class="nt" style="color: navy;"><para></span>You can use <span class="nt" style="color: navy;"><command></span><span class="ni" style="color: purple;">&dhpackage;</span><span class="nt" style="color: navy;"></command></span> as a command line program (very useful for batch treatment) to infer phylogenetic trees.<span class="nt" style="color: navy;"></para></span></span>
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<pre style="margin: 0;"> <span id="LC110" class="line" lang="xml"> <span class="nt" style="color: navy;"></refsynopsisdiv></span></span>
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<pre style="margin: 0;"> <span id="LC111" class="line" lang="xml"> <span class="nt" style="color: navy;"><refsect1</span> <span class="na" style="color: teal;">id=</span><span class="s" style="color: #d14;">"description"</span><span class="nt" style="color: navy;">></span></span>
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<pre style="margin: 0;"> <span id="LC112" class="line" lang="xml"> <span class="nt" style="color: navy;"><title></span>DESCRIPTION<span class="nt" style="color: navy;"></title></span></span>
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<a href="https://salsa.debian.org/med-team/populations/compare/086c47e87d33b66eca1cc53be2cd46106981d882...c66c8daff8c9e44a6bfd2e74af99c5be6c6f6c27#738712798a018d6dd2b8e5cac27b9cf7cc4b7a48"><strong>debian/patches/fix-ftbfs-gcc-4.7-667327.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff">Author: gregor herrmann</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff">Last-Update: 2012-04-21 13:12:39 +0200</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff">Description: Enable building with gcc-4.7</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/src/vecteurs.h 2012-04-14 01:04:00.875307000 -0400</span></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/src/vecteurs.h 2012-04-14 01:04:06.531306699 -0400</span></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -86,7 +86,7 @@ public:</span></span>
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<a href="https://salsa.debian.org/med-team/populations/compare/086c47e87d33b66eca1cc53be2cd46106981d882...c66c8daff8c9e44a6bfd2e74af99c5be6c6f6c27#2ccb4df5273befd58d6563b7936f2ced85b7397d"><strong>debian/populations.1</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -37,7 +37,7 @@ populations \- population genetic software</td>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext">.PP</span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext">You can use</span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext">\fBpopulations\fR</span>
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<pre style="margin: 0;">-<span id="LC40" class="line" lang="plaintext">as a command line program<span class="idiff left right">m</span> (very useful for batch treatment) to infer phylogenetic trees\&.</span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="plaintext">as a command line program (very useful for batch treatment) to infer phylogenetic trees\&.</span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext">.SH "DESCRIPTION"</span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext">.PP</span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext">\fBpopulations\fR</span>
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<a href="https://salsa.debian.org/med-team/populations/compare/086c47e87d33b66eca1cc53be2cd46106981d882...c66c8daff8c9e44a6bfd2e74af99c5be6c6f6c27#68ef9f98c01c7eecd4c605cc26048a06f3304b79"><strong>debian/watch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">version=4</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">http://ppa.launchpad.net/olivier-langella/ppa/ubuntu/pool/main/p/populations/populations_(\d[\d.]+)-[\d]@ARCHIVE_EXT@</span></pre>
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