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<h3>
Olivier Sallou pushed to branch master
at <a href="https://salsa.debian.org/med-team/biomaj3-daemon">Debian Med / biomaj3-daemon</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/biomaj3-daemon/commit/cf36d55f5afa45745d3051fbddc8f712ea9fe1ee">cf36d55f</a></strong>
<div>
<span>by Olivier Sallou</span>
<i>at 2018-10-25T09:23:33Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 3.0.17</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/biomaj3-daemon/commit/b7f5ec3bc2211a50dff211dfa9e258260197d62e">b7f5ec3b</a></strong>
<div>
<span>by Olivier Sallou</span>
<i>at 2018-10-25T09:23:37Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Updated version 3.0.17 from 'upstream/3.0.17'
with Debian dir 33795086981658cb16eaf6d1da2b248d83943c44</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/biomaj3-daemon/commit/fb7b94d764d121f120704485858fddba95d11aa7">fb7b94d7</a></strong>
<div>
<span>by Olivier Sallou</span>
<i>at 2018-10-25T09:24:48Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">new upstream release 3.0.17
</pre>
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<h4>8 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#3251d7a8143ce2e789f0468513df8f285f842c3a">
CHANGES.txt
</a>
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<li class="file-stats">
<a href="#98650bd1fd25b0c601a7ca974b5e948457295175">
biomaj_daemon/daemon/biomaj_daemon_web.py
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</li>
<li class="file-stats">
<a href="#08498b24276ab668dde0f69d681f481126c86d3f">
biomaj_daemon/daemon/daemon_service.py
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<li class="file-stats">
<a href="#8d4e7b9777648699189cde60ef87d204c8800e22">
biomaj_daemon/daemon/utils.py
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#19359a61ae2446b51b549167b014da2fcf265768">
requirements.txt
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<li class="file-stats">
<a href="#8e2edce0d507e1297474f25c00cae94258db38d8">
setup.py
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</ul>
<h4>Changes:</h4>
<li id="3251d7a8143ce2e789f0468513df8f285f842c3a">
<a href="https://salsa.debian.org/med-team/biomaj3-daemon/compare/433773ba49ed787282e460d862da1515ea964e5a...fb7b94d764d121f120704485858fddba95d11aa7#3251d7a8143ce2e789f0468513df8f285f842c3a"><strong>CHANGES.txt</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">3.0.17:</span>
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<td class="diff-line-num new new_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"> Allow use of env variables to override micro.x and rabbitmq variables in global.properties</span>
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<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> like for config.yml.</span>
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<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> Ex: WEB_LOCAL_ENDPOINT_DOWNLOAD defines proxy address for download web service,</span>
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<td class="diff-line-num new new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> WEB_LOCAL_ENDPOINT defines global proxy address for all web services, etc.</span>
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<td class="diff-line-num new new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> If not defined, will use values from global.properties</span>
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<td class="diff-line-num new new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">3.0.16:</span>
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<td class="diff-line-num new new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> After migration checks, update db_schema to current version</span>
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<td class="diff-line-num new new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext">3.0.15:</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> Add --history option</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> Catch SIGTERM to cancel bank update for SIGKILL</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext">3.0.14:</span>
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<td class="diff-line-num new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> Fake version for Pypi re-upload</span>
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<td class="diff-line-num old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext">3.0.13:</span>
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<li id="98650bd1fd25b0c601a7ca974b5e948457295175">
<a href="https://salsa.debian.org/med-team/biomaj3-daemon/compare/433773ba49ed787282e460d862da1515ea964e5a...fb7b94d764d121f120704485858fddba95d11aa7#98650bd1fd25b0c601a7ca974b5e948457295175"><strong>biomaj_daemon/daemon/biomaj_daemon_web.py</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="72" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="72" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -72,6 +72,7 @@ redis_client = redis.StrictRedis(</td>
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<td class="diff-line-num old_line" data-linenumber="72" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
72
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<td class="diff-line-num new_line" data-linenumber="72" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC72" class="line" lang="python"></span>
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<td class="diff-line-num old_line" data-linenumber="73" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC73" class="line" lang="python"><span class="n" style="color: #333;">logging</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">info</span><span class="p">(</span><span class="s" style="color: #d14;">"Check database schema and upgrade if necessary"</span><span class="p">)</span></span>
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<td class="diff-line-num old_line" data-linenumber="74" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="74" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC74" class="line" lang="python"><span class="n" style="color: #333;">SchemaVersion</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">migrate_pendings</span><span class="p">()</span></span>
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<td class="diff-line-num new new_line" data-linenumber="75" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC75" class="line" lang="python"><span class="n" style="color: #333;">SchemaVersion</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">set_version</span><span class="p">()</span></span>
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<pre style="margin: 0;"> <span id="LC76" class="line" lang="python"></span>
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76
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<pre style="margin: 0;"> <span id="LC77" class="line" lang="python"><span class="n" style="color: #333;">app</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">Flask</span><span class="p">(</span><span class="n" style="color: #333;">__name__</span><span class="p">)</span></span>
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78
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<pre style="margin: 0;"> <span id="LC78" class="line" lang="python"></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="136" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="137" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -136,7 +137,9 @@ OPTIONS_PARAMS = {</td>
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136
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137
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<pre style="margin: 0;"> <span id="LC137" class="line" lang="python"> <span class="s" style="color: #d14;">'userlogin'</span><span class="p">:</span> <span class="bp" style="color: #999;">None</span><span class="p">,</span></span>
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137
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138
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<pre style="margin: 0;"> <span id="LC138" class="line" lang="python"> <span class="s" style="color: #d14;">'userpassword'</span><span class="p">:</span> <span class="bp" style="color: #999;">None</span><span class="p">,</span></span>
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138
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139
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<pre style="margin: 0;"> <span id="LC139" class="line" lang="python"> <span class="s" style="color: #d14;">'proxy'</span><span class="p">:</span> <span class="bp" style="color: #999;">None</span><span class="p">,</span></span>
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139
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<pre style="margin: 0;">-<span id="LC139" class="line" lang="python"> <span class="s" style="color: #d14;">'schedule'</span><span class="p">:</span> <span class="bp" style="color: #999;">False</span></span>
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140
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<pre style="margin: 0;">+<span id="LC140" class="line" lang="python"> <span class="s" style="color: #d14;">'schedule'</span><span class="p">:</span> <span class="bp" style="color: #999;">False</span><span class="p">,</span></span>
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141
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<pre style="margin: 0;">+<span id="LC141" class="line" lang="python"> <span class="s" style="color: #d14;">'history'</span><span class="p">:</span> <span class="bp" style="color: #999;">False</span><span class="p">,</span></span>
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142
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<pre style="margin: 0;">+<span id="LC142" class="line" lang="python"> <span class="s" style="color: #d14;">'historyLimit'</span><span class="p">:</span> <span class="mi" style="color: #099;">20</span></span>
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140
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143
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<pre style="margin: 0;"> <span id="LC143" class="line" lang="python"><span class="p">}</span></span>
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144
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<pre style="margin: 0;"> <span id="LC144" class="line" lang="python"></span>
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142
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<pre style="margin: 0;"> <span id="LC145" class="line" lang="python"></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="543" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -543,6 +546,26 @@ def biomaj_daemon_version():</td>
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543
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<pre style="margin: 0;"> <span id="LC546" class="line" lang="python"> <span class="k" style="font-weight: 600;">except</span> <span class="nb" style="color: #0086b3;">Exception</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">e</span><span class="p">:</span></span>
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<pre style="margin: 0;"> <span id="LC547" class="line" lang="python"> <span class="n" style="color: #333;">abort</span><span class="p">(</span><span class="mi" style="color: #099;">500</span><span class="p">,</span> <span class="nb" style="color: #0086b3;">str</span><span class="p">(</span><span class="n" style="color: #333;">e</span><span class="p">))</span></span>
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548
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<pre style="margin: 0;"> <span id="LC548" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC549" class="line" lang="python"></span>
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550
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<pre style="margin: 0;">+<span id="LC550" class="line" lang="python"><span class="o" style="font-weight: 600;">@</span><span class="n" style="color: #333;">app</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">route</span><span class="p">(</span><span class="s" style="color: #d14;">'/api/daemon/history'</span><span class="p">,</span> <span class="n" style="color: #333;">methods</span><span class="o" style="font-weight: 600;">=</span><span class="p">[</span><span class="s" style="color: #d14;">'GET'</span><span class="p">])</span></span>
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551
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<pre style="margin: 0;">+<span id="LC551" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">biomaj_daemon_history</span><span class="p">():</span></span>
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552
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<pre style="margin: 0;">+<span id="LC552" class="line" lang="python"> <span class="p">(</span><span class="n" style="color: #333;">http_code</span><span class="p">,</span> <span class="n" style="color: #333;">options</span><span class="p">,</span> <span class="n" style="color: #333;">error</span><span class="p">)</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">daemon_api_auth</span><span class="p">(</span><span class="n" style="color: #333;">request</span><span class="p">)</span></span>
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553
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<pre style="margin: 0;">+<span id="LC553" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">error</span><span class="p">:</span></span>
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554
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<pre style="margin: 0;">+<span id="LC554" class="line" lang="python"> <span class="n" style="color: #333;">abort</span><span class="p">(</span><span class="n" style="color: #333;">http_code</span><span class="p">,</span> <span class="n" style="color: #333;">error</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC555" class="line" lang="python"></span>
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556
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<pre style="margin: 0;">+<span id="LC556" class="line" lang="python"> <span class="n" style="color: #333;">options</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">history</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">True</span></span>
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557
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<pre style="margin: 0;">+<span id="LC557" class="line" lang="python"> <span class="n" style="color: #333;">options</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">historyLimit</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">request</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">args</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">'limit'</span><span class="p">,</span> <span class="mi" style="color: #099;">100</span><span class="p">)</span></span>
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558
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<pre style="margin: 0;">+<span id="LC558" class="line" lang="python"> <span class="k" style="font-weight: 600;">try</span><span class="p">:</span></span>
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559
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<pre style="margin: 0;">+<span id="LC559" class="line" lang="python"> <span class="p">(</span><span class="n" style="color: #333;">res</span><span class="p">,</span> <span class="n" style="color: #333;">msg</span><span class="p">)</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">biomaj_client_action</span><span class="p">(</span><span class="n" style="color: #333;">options</span><span class="p">,</span> <span class="n" style="color: #333;">config</span><span class="p">)</span></span>
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560
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<pre style="margin: 0;">+<span id="LC560" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">res</span><span class="p">:</span></span>
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561
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<pre style="margin: 0;">+<span id="LC561" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="nb" style="color: #0086b3;">isinstance</span><span class="p">(</span><span class="n" style="color: #333;">msg</span><span class="p">,</span> <span class="nb" style="color: #0086b3;">dict</span><span class="p">):</span></span>
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562
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<pre style="margin: 0;">+<span id="LC562" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">jsonify</span><span class="p">(</span><span class="n" style="color: #333;">msg</span><span class="p">)</span></span>
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563
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<pre style="margin: 0;">+<span id="LC563" class="line" lang="python"> <span class="k" style="font-weight: 600;">else</span><span class="p">:</span></span>
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564
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<pre style="margin: 0;">+<span id="LC564" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">jsonify</span><span class="p">({</span><span class="s" style="color: #d14;">'msg'</span><span class="p">:</span> <span class="n" style="color: #333;">msg</span><span class="p">})</span></span>
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565
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<pre style="margin: 0;">+<span id="LC565" class="line" lang="python"> <span class="k" style="font-weight: 600;">except</span> <span class="nb" style="color: #0086b3;">Exception</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">e</span><span class="p">:</span></span>
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566
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<pre style="margin: 0;">+<span id="LC566" class="line" lang="python"> <span class="n" style="color: #333;">abort</span><span class="p">(</span><span class="mi" style="color: #099;">500</span><span class="p">,</span> <span class="nb" style="color: #0086b3;">str</span><span class="p">(</span><span class="n" style="color: #333;">e</span><span class="p">))</span></span>
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567
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<pre style="margin: 0;">+<span id="LC567" class="line" lang="python"></span>
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568
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<pre style="margin: 0;">+<span id="LC568" class="line" lang="python"></span>
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546
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569
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<pre style="margin: 0;"> <span id="LC569" class="line" lang="python"><span class="o" style="font-weight: 600;">@</span><span class="n" style="color: #333;">app</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">route</span><span class="p">(</span><span class="s" style="color: #d14;">'/api/daemon/bank'</span><span class="p">,</span> <span class="n" style="color: #333;">methods</span><span class="o" style="font-weight: 600;">=</span><span class="p">[</span><span class="s" style="color: #d14;">'GET'</span><span class="p">])</span></span>
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547
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570
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<pre style="margin: 0;"> <span id="LC570" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">biomaj_daemon_banks_status</span><span class="p">():</span></span>
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548
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571
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<pre style="margin: 0;"> <span id="LC571" class="line" lang="python"> <span class="p">(</span><span class="n" style="color: #333;">http_code</span><span class="p">,</span> <span class="n" style="color: #333;">options</span><span class="p">,</span> <span class="n" style="color: #333;">error</span><span class="p">)</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">daemon_api_auth</span><span class="p">(</span><span class="n" style="color: #333;">request</span><span class="p">)</span></span>
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<li id="08498b24276ab668dde0f69d681f481126c86d3f">
<a href="https://salsa.debian.org/med-team/biomaj3-daemon/compare/433773ba49ed787282e460d862da1515ea964e5a...fb7b94d764d121f120704485858fddba95d11aa7#08498b24276ab668dde0f69d681f481126c86d3f"><strong>biomaj_daemon/daemon/daemon_service.py</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -6,6 +6,8 @@ import datetime</td>
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6
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6
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">time</span></span>
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7
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7
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">json</span></span>
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8
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8
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">threading</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">signal</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">sys</span></span>
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11
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="python"></span>
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12
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">redis</span></span>
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13
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">consul</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -82,6 +84,7 @@ class DaemonService(object):</td>
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84
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<pre style="margin: 0;"> <span id="LC84" class="line" lang="python"></span>
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85
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<pre style="margin: 0;"> <span id="LC85" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">__init__</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">,</span> <span class="n" style="color: #333;">config_file</span><span class="p">):</span></span>
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<pre style="margin: 0;"> <span id="LC86" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">logger</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">logging</span></span>
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<pre style="margin: 0;">+<span id="LC87" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">curBank</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">None</span></span>
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<pre style="margin: 0;"> <span id="LC88" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">session</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">None</span></span>
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<pre style="margin: 0;"> <span id="LC89" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">executed_callback</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">None</span></span>
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<pre style="margin: 0;"> <span id="LC90" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="nb" style="color: #0086b3;">open</span><span class="p">(</span><span class="n" style="color: #333;">config_file</span><span class="p">,</span> <span class="s" style="color: #d14;">'r'</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">ymlfile</span><span class="p">:</span></span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="94" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -91,6 +94,24 @@ class DaemonService(object):</td>
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91
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<pre style="margin: 0;"> <span id="LC94" class="line" lang="python"> <span class="n" style="color: #333;">Zipkin</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">set_config</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">config</span><span class="p">)</span></span>
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92
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<pre style="margin: 0;"> <span id="LC95" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC96" class="line" lang="python"> <span class="n" style="color: #333;">BiomajConfig</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">load_config</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">config</span><span class="p">[</span><span class="s" style="color: #d14;">'biomaj'</span><span class="p">][</span><span class="s" style="color: #d14;">'config'</span><span class="p">])</span></span>
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<pre style="margin: 0;">+<span id="LC97" class="line" lang="python"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">svc</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">Utils</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">services</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC98" class="line" lang="python"> <span class="n" style="color: #333;">service</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">svc</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">lower</span><span class="p">()</span></span>
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<pre style="margin: 0;">+<span id="LC99" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">config</span><span class="p">[</span><span class="s" style="color: #d14;">'web'</span><span class="p">]</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">'local_endpoint_'</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">service</span><span class="p">,</span> <span class="bp" style="color: #999;">None</span><span class="p">):</span></span>
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100
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<pre style="margin: 0;">+<span id="LC100" class="line" lang="python"> <span class="n" style="color: #333;">BiomajConfig</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">global_config</span><span class="o" style="font-weight: 600;">.</span><span class="nb" style="color: #0086b3;">set</span><span class="p">(</span><span class="s" style="color: #d14;">'GENERAL'</span><span class="p">,</span> <span class="s" style="color: #d14;">'micro.biomaj.service.'</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">service</span> <span class="p">,</span> <span class="s" style="color: #d14;">'1'</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="101" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
101
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<pre style="margin: 0;">+<span id="LC101" class="line" lang="python"> <span class="n" style="color: #333;">BiomajConfig</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">global_config</span><span class="o" style="font-weight: 600;">.</span><span class="nb" style="color: #0086b3;">set</span><span class="p">(</span><span class="s" style="color: #d14;">'GENERAL'</span><span class="p">,</span> <span class="s" style="color: #d14;">'micro.biomaj.proxy.'</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">service</span> <span class="p">,</span> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">config</span><span class="p">[</span><span class="s" style="color: #d14;">'web'</span><span class="p">][</span><span class="s" style="color: #d14;">'local_endpoint_'</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">service</span><span class="p">])</span></span>
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<td class="diff-line-num new new_line" data-linenumber="102" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
102
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<pre style="margin: 0;">+<span id="LC102" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">config</span><span class="p">[</span><span class="s" style="color: #d14;">'web'</span><span class="p">]</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">'local_endpoint'</span><span class="p">,</span> <span class="bp" style="color: #999;">None</span><span class="p">):</span></span>
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<td class="diff-line-num new new_line" data-linenumber="103" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
103
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<pre style="margin: 0;">+<span id="LC103" class="line" lang="python"> <span class="n" style="color: #333;">BiomajConfig</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">global_config</span><span class="o" style="font-weight: 600;">.</span><span class="nb" style="color: #0086b3;">set</span><span class="p">(</span><span class="s" style="color: #d14;">'GENERAL'</span><span class="p">,</span> <span class="s" style="color: #d14;">'micro.biomaj.proxy'</span> <span class="p">,</span> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">config</span><span class="p">[</span><span class="s" style="color: #d14;">'web'</span><span class="p">][</span><span class="s" style="color: #d14;">'local_endpoint'</span><span class="p">])</span></span>
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<td class="diff-line-num new new_line" data-linenumber="104" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
104
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<pre style="margin: 0;">+<span id="LC104" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">config</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">'rabbitmq'</span><span class="p">,</span> <span class="bp" style="color: #999;">None</span><span class="p">):</span></span>
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<td class="diff-line-num new new_line" data-linenumber="105" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
105
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<pre style="margin: 0;">+<span id="LC105" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">config</span><span class="p">[</span><span class="s" style="color: #d14;">'rabbitmq'</span><span class="p">]</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">'host'</span><span class="p">,</span> <span class="bp" style="color: #999;">None</span><span class="p">):</span></span>
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<td class="diff-line-num new new_line" data-linenumber="106" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
106
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<pre style="margin: 0;">+<span id="LC106" class="line" lang="python"> <span class="n" style="color: #333;">BiomajConfig</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">global_config</span><span class="o" style="font-weight: 600;">.</span><span class="nb" style="color: #0086b3;">set</span><span class="p">(</span><span class="s" style="color: #d14;">'GENERAL'</span><span class="p">,</span> <span class="s" style="color: #d14;">'micro.biomaj.rabbit_mq'</span> <span class="p">,</span> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">config</span><span class="p">[</span><span class="s" style="color: #d14;">'rabbitmq'</span><span class="p">][</span><span class="s" style="color: #d14;">'host'</span><span class="p">])</span></span>
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<td class="diff-line-num new new_line" data-linenumber="107" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
107
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<pre style="margin: 0;">+<span id="LC107" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">config</span><span class="p">[</span><span class="s" style="color: #d14;">'rabbitmq'</span><span class="p">]</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">'port'</span><span class="p">,</span> <span class="bp" style="color: #999;">None</span><span class="p">):</span></span>
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<td class="diff-line-num new new_line" data-linenumber="108" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
108
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<pre style="margin: 0;">+<span id="LC108" class="line" lang="python"> <span class="n" style="color: #333;">BiomajConfig</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">global_config</span><span class="o" style="font-weight: 600;">.</span><span class="nb" style="color: #0086b3;">set</span><span class="p">(</span><span class="s" style="color: #d14;">'GENERAL'</span><span class="p">,</span> <span class="s" style="color: #d14;">'micro.biomaj.rabbit_mq_port'</span> <span class="p">,</span> <span class="nb" style="color: #0086b3;">str</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">config</span><span class="p">[</span><span class="s" style="color: #d14;">'rabbitmq'</span><span class="p">][</span><span class="s" style="color: #d14;">'port'</span><span class="p">]))</span></span>
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<td class="diff-line-num new new_line" data-linenumber="109" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
109
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<pre style="margin: 0;">+<span id="LC109" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">config</span><span class="p">[</span><span class="s" style="color: #d14;">'rabbitmq'</span><span class="p">]</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">'user'</span><span class="p">,</span> <span class="bp" style="color: #999;">None</span><span class="p">):</span></span>
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<td class="diff-line-num new new_line" data-linenumber="110" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
110
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<pre style="margin: 0;">+<span id="LC110" class="line" lang="python"> <span class="n" style="color: #333;">BiomajConfig</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">global_config</span><span class="o" style="font-weight: 600;">.</span><span class="nb" style="color: #0086b3;">set</span><span class="p">(</span><span class="s" style="color: #d14;">'GENERAL'</span><span class="p">,</span> <span class="s" style="color: #d14;">'micro.biomaj.rabbit_mq_user'</span> <span class="p">,</span> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">config</span><span class="p">[</span><span class="s" style="color: #d14;">'rabbitmq'</span><span class="p">][</span><span class="s" style="color: #d14;">'user'</span><span class="p">])</span></span>
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<td class="diff-line-num new new_line" data-linenumber="111" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
111
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<pre style="margin: 0;">+<span id="LC111" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">config</span><span class="p">[</span><span class="s" style="color: #d14;">'rabbitmq'</span><span class="p">]</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">'password'</span><span class="p">,</span> <span class="bp" style="color: #999;">None</span><span class="p">):</span></span>
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<td class="diff-line-num new new_line" data-linenumber="112" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
112
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<pre style="margin: 0;">+<span id="LC112" class="line" lang="python"> <span class="n" style="color: #333;">BiomajConfig</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">global_config</span><span class="o" style="font-weight: 600;">.</span><span class="nb" style="color: #0086b3;">set</span><span class="p">(</span><span class="s" style="color: #d14;">'GENERAL'</span><span class="p">,</span> <span class="s" style="color: #d14;">'micro.biomaj.rabbit_mq_password'</span> <span class="p">,</span> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">config</span><span class="p">[</span><span class="s" style="color: #d14;">'rabbitmq'</span><span class="p">][</span><span class="s" style="color: #d14;">'password'</span><span class="p">])</span></span>
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<td class="diff-line-num new new_line" data-linenumber="113" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
113
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<pre style="margin: 0;">+<span id="LC113" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">config</span><span class="p">[</span><span class="s" style="color: #d14;">'rabbitmq'</span><span class="p">]</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">'virtual_host'</span><span class="p">,</span> <span class="bp" style="color: #999;">None</span><span class="p">):</span></span>
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<td class="diff-line-num new new_line" data-linenumber="114" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
114
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<pre style="margin: 0;">+<span id="LC114" class="line" lang="python"> <span class="n" style="color: #333;">BiomajConfig</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">global_config</span><span class="o" style="font-weight: 600;">.</span><span class="nb" style="color: #0086b3;">set</span><span class="p">(</span><span class="s" style="color: #d14;">'GENERAL'</span><span class="p">,</span> <span class="s" style="color: #d14;">'micro.biomaj.rabbit_mq_virtual_host'</span> <span class="p">,</span> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">config</span><span class="p">[</span><span class="s" style="color: #d14;">'rabbitmq'</span><span class="p">][</span><span class="s" style="color: #d14;">'virtual_host'</span><span class="p">])</span></span>
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94
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115
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<pre style="margin: 0;"> <span id="LC115" class="line" lang="python"></span>
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95
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116
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<pre style="margin: 0;"> <span id="LC116" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="s" style="color: #d14;">'log_config'</span> <span class="ow" style="font-weight: 600;">in</span> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">config</span><span class="p">:</span></span>
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96
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117
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<pre style="margin: 0;"> <span id="LC117" class="line" lang="python"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">handler</span> <span class="ow" style="font-weight: 600;">in</span> <span class="nb" style="color: #0086b3;">list</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">config</span><span class="p">[</span><span class="s" style="color: #d14;">'log_config'</span><span class="p">][</span><span class="s" style="color: #d14;">'handlers'</span><span class="p">]</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">keys</span><span class="p">()):</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -106,6 +127,16 @@ class DaemonService(object):</td>
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106
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127
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<pre style="margin: 0;"> <span id="LC127" class="line" lang="python"> <span class="p">)</span></span>
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107
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128
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<pre style="margin: 0;"> <span id="LC128" class="line" lang="python"></span>
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108
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129
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<pre style="margin: 0;"> <span id="LC129" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">logger</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">info</span><span class="p">(</span><span class="s" style="color: #d14;">'Daemon service started'</span><span class="p">)</span></span>
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130
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<pre style="margin: 0;">+<span id="LC130" class="line" lang="python"> <span class="n" style="color: #333;">signal</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">signal</span><span class="p">(</span><span class="n" style="color: #333;">signal</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">SIGTERM</span><span class="p">,</span> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">catch</span><span class="p">)</span></span>
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131
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<pre style="margin: 0;">+<span id="LC131" class="line" lang="python"> <span class="n" style="color: #333;">signal</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">siginterrupt</span><span class="p">(</span><span class="n" style="color: #333;">signal</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">SIGTERM</span><span class="p">,</span> <span class="bp" style="color: #999;">False</span><span class="p">)</span></span>
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132
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<pre style="margin: 0;">+<span id="LC132" class="line" lang="python"></span>
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133
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<pre style="margin: 0;">+<span id="LC133" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">catch</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">,</span> <span class="n" style="color: #333;">signum</span><span class="p">,</span> <span class="n" style="color: #333;">frame</span><span class="p">):</span></span>
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134
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<pre style="margin: 0;">+<span id="LC134" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">logger</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">warn</span><span class="p">(</span><span class="s" style="color: #d14;">'SIGTERM signal received'</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="135" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
135
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<pre style="margin: 0;">+<span id="LC135" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">curBank</span><span class="p">:</span></span>
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136
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<pre style="margin: 0;">+<span id="LC136" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">redis_client</span><span class="o" style="font-weight: 600;">.</span><span class="nb" style="color: #0086b3;">set</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">config</span><span class="p">[</span><span class="s" style="color: #d14;">'redis'</span><span class="p">][</span><span class="s" style="color: #d14;">'prefix'</span><span class="p">]</span> <span class="o" style="font-weight: 600;">+</span> <span class="s" style="color: #d14;">':'</span> <span class="o" style="font-weight: 600;">+</span> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">curBank</span> <span class="o" style="font-weight: 600;">+</span> <span class="s" style="color: #d14;">':action:cancel'</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">)</span></span>
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137
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<pre style="margin: 0;">+<span id="LC137" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">logger</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">warn</span><span class="p">(</span><span class="s" style="color: #d14;">'SIGTERM signal received, cancelling update for '</span> <span class="o" style="font-weight: 600;">+</span> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">curBank</span><span class="p">)</span></span>
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138
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<pre style="margin: 0;">+<span id="LC138" class="line" lang="python"> <span class="k" style="font-weight: 600;">else</span><span class="p">:</span></span>
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139
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<pre style="margin: 0;">+<span id="LC139" class="line" lang="python"> <span class="n" style="color: #333;">sys</span><span class="o" style="font-weight: 600;">.</span><span class="nb" style="color: #0086b3;">exit</span><span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">)</span></span>
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109
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140
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<pre style="margin: 0;"> <span id="LC140" class="line" lang="python"></span>
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110
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141
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<pre style="margin: 0;"> <span id="LC141" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">close</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">):</span></span>
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111
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142
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<pre style="margin: 0;"> <span id="LC142" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">channel</span><span class="p">:</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="115" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -115,6 +146,7 @@ class DaemonService(object):</td>
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115
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146
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<pre style="margin: 0;"> <span id="LC146" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">executed_callback</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">func</span></span>
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116
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147
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<pre style="margin: 0;"> <span id="LC147" class="line" lang="python"></span>
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117
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148
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<pre style="margin: 0;"> <span id="LC148" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">__start_action</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">,</span> <span class="n" style="color: #333;">bank</span><span class="p">,</span> <span class="n" style="color: #333;">action</span><span class="p">):</span></span>
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149
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<pre style="margin: 0;">+<span id="LC149" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">curBank</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">bank</span></span>
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118
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150
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<pre style="margin: 0;"> <span id="LC150" class="line" lang="python"> <span class="n" style="color: #333;">whatsup</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">bank</span> <span class="o" style="font-weight: 600;">+</span> <span class="s" style="color: #d14;">':'</span> <span class="o" style="font-weight: 600;">+</span> <span class="nb" style="color: #0086b3;">str</span><span class="p">(</span><span class="n" style="color: #333;">action</span><span class="p">)</span></span>
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119
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151
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<pre style="margin: 0;"> <span id="LC151" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">redis_client</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">hset</span><span class="p">(</span></span>
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120
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152
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<pre style="margin: 0;"> <span id="LC152" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">config</span><span class="p">[</span><span class="s" style="color: #d14;">'redis'</span><span class="p">][</span><span class="s" style="color: #d14;">'prefix'</span><span class="p">]</span> <span class="o" style="font-weight: 600;">+</span> <span class="s" style="color: #d14;">':daemons:status'</span><span class="p">,</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="133" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="165" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -133,6 +165,7 @@ class DaemonService(object):</td>
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133
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165
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<pre style="margin: 0;"> <span id="LC165" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">config</span><span class="p">[</span><span class="s" style="color: #d14;">'consul'</span><span class="p">][</span><span class="s" style="color: #d14;">'id'</span><span class="p">],</span></span>
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134
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166
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<pre style="margin: 0;"> <span id="LC166" class="line" lang="python"> <span class="s" style="color: #d14;">'pending'</span></span>
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135
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167
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<pre style="margin: 0;"> <span id="LC167" class="line" lang="python"> <span class="p">)</span></span>
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168
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<pre style="margin: 0;">+<span id="LC168" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">curBank</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">None</span></span>
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136
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169
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<pre style="margin: 0;"> <span id="LC169" class="line" lang="python"></span>
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137
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170
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<pre style="margin: 0;"> <span id="LC170" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">execute</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">,</span> <span class="n" style="color: #333;">options</span><span class="p">):</span></span>
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138
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171
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<pre style="margin: 0;"> <span id="LC171" class="line" lang="python"> <span class="s" style="color: #d14;">'''</span></span>
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<li id="8d4e7b9777648699189cde60ef87d204c8800e22">
<a href="https://salsa.debian.org/med-team/biomaj3-daemon/compare/433773ba49ed787282e460d862da1515ea964e5a...fb7b94d764d121f120704485858fddba95d11aa7#8d4e7b9777648699189cde60ef87d204c8800e22"><strong>biomaj_daemon/daemon/utils.py</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="810" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="810" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -810,11 +810,36 @@ def biomaj_stats(options, config):</td>
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810
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810
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<pre style="margin: 0;"> <span id="LC810" class="line" lang="python"> <span class="n" style="color: #333;">msg</span> <span class="o" style="font-weight: 600;">+=</span> <span class="n" style="color: #333;">tabulate</span><span class="p">(</span><span class="n" style="color: #333;">results</span><span class="p">,</span> <span class="n" style="color: #333;">headers</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"firstrow"</span><span class="p">,</span> <span class="n" style="color: #333;">tablefmt</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"grid"</span><span class="p">)</span></span>
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811
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811
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<pre style="margin: 0;"> <span id="LC811" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="p">(</span><span class="bp" style="color: #999;">True</span><span class="p">,</span> <span class="n" style="color: #333;">msg</span><span class="p">)</span></span>
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812
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812
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<pre style="margin: 0;"> <span id="LC812" class="line" lang="python"></span>
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813
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<pre style="margin: 0;">+<span id="LC813" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">biomaj_history</span><span class="p">(</span><span class="n" style="color: #333;">options</span><span class="p">,</span> <span class="n" style="color: #333;">config</span><span class="p">):</span></span>
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<td class="diff-line-num new new_line" data-linenumber="814" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
814
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<pre style="margin: 0;">+<span id="LC814" class="line" lang="python"> <span class="n" style="color: #333;">history</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">Bank</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">get_history</span><span class="p">(</span><span class="n" style="color: #333;">options</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">historyLimit</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC815" class="line" lang="python"> <span class="n" style="color: #333;">results</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[]</span></span>
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<td class="diff-line-num new new_line" data-linenumber="816" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
816
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<pre style="margin: 0;">+<span id="LC816" class="line" lang="python"> <span class="n" style="color: #333;">headers</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[</span><span class="s" style="color: #d14;">"Bank"</span><span class="p">,</span> <span class="s" style="color: #d14;">"Action"</span><span class="p">,</span> <span class="s" style="color: #d14;">"Start"</span><span class="p">,</span> <span class="s" style="color: #d14;">"End"</span><span class="p">,</span> <span class="s" style="color: #d14;">"Updated"</span><span class="p">,</span> <span class="s" style="color: #d14;">"Error"</span><span class="p">]</span></span>
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817
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<pre style="margin: 0;">+<span id="LC817" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="ow" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">options</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">json</span><span class="p">:</span></span>
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818
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<pre style="margin: 0;">+<span id="LC818" class="line" lang="python"> <span class="n" style="color: #333;">results</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">append</span><span class="p">(</span><span class="n" style="color: #333;">headers</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="819" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
819
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<pre style="margin: 0;">+<span id="LC819" class="line" lang="python"> <span class="n" style="color: #333;">msg</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">'BioMAJ history</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">'</span></span>
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<td class="diff-line-num new new_line" data-linenumber="820" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
820
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<pre style="margin: 0;">+<span id="LC820" class="line" lang="python"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">h</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">history</span><span class="p">:</span></span>
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821
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<pre style="margin: 0;">+<span id="LC821" class="line" lang="python"> <span class="n" style="color: #333;">results</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">append</span><span class="p">([</span><span class="n" style="color: #333;">h</span><span class="p">[</span><span class="s" style="color: #d14;">'bank'</span><span class="p">],</span></span>
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822
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<pre style="margin: 0;">+<span id="LC822" class="line" lang="python"> <span class="n" style="color: #333;">h</span><span class="p">[</span><span class="s" style="color: #d14;">'action'</span><span class="p">],</span></span>
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823
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<pre style="margin: 0;">+<span id="LC823" class="line" lang="python"> <span class="n" style="color: #333;">datetime</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">datetime</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">utcfromtimestamp</span><span class="p">(</span><span class="n" style="color: #333;">h</span><span class="p">[</span><span class="s" style="color: #d14;">'start'</span><span class="p">]),</span></span>
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824
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<pre style="margin: 0;">+<span id="LC824" class="line" lang="python"> <span class="n" style="color: #333;">datetime</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">datetime</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">utcfromtimestamp</span><span class="p">(</span><span class="n" style="color: #333;">h</span><span class="p">[</span><span class="s" style="color: #d14;">'end'</span><span class="p">]),</span></span>
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825
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<pre style="margin: 0;">+<span id="LC825" class="line" lang="python"> <span class="nb" style="color: #0086b3;">str</span><span class="p">(</span><span class="n" style="color: #333;">h</span><span class="p">[</span><span class="s" style="color: #d14;">'updated'</span><span class="p">]),</span></span>
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826
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<pre style="margin: 0;">+<span id="LC826" class="line" lang="python"> <span class="nb" style="color: #0086b3;">str</span><span class="p">(</span><span class="n" style="color: #333;">h</span><span class="p">[</span><span class="s" style="color: #d14;">'error'</span><span class="p">])</span></span>
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827
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<pre style="margin: 0;">+<span id="LC827" class="line" lang="python"> <span class="p">])</span></span>
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828
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<pre style="margin: 0;">+<span id="LC828" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">options</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">json</span><span class="p">:</span></span>
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829
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<pre style="margin: 0;">+<span id="LC829" class="line" lang="python"> <span class="n" style="color: #333;">msg</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">{</span><span class="s" style="color: #d14;">'headers'</span><span class="p">:</span> <span class="n" style="color: #333;">headers</span><span class="p">,</span> <span class="s" style="color: #d14;">'history'</span><span class="p">:</span> <span class="n" style="color: #333;">results</span><span class="p">}</span></span>
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830
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<pre style="margin: 0;">+<span id="LC830" class="line" lang="python"> <span class="k" style="font-weight: 600;">else</span><span class="p">:</span></span>
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831
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<pre style="margin: 0;">+<span id="LC831" class="line" lang="python"> <span class="n" style="color: #333;">msg</span> <span class="o" style="font-weight: 600;">+=</span> <span class="n" style="color: #333;">tabulate</span><span class="p">(</span><span class="n" style="color: #333;">results</span><span class="p">,</span> <span class="n" style="color: #333;">headers</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"firstrow"</span><span class="p">,</span> <span class="n" style="color: #333;">tablefmt</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"grid"</span><span class="p">)</span></span>
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832
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<pre style="margin: 0;">+<span id="LC832" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="p">(</span><span class="bp" style="color: #999;">True</span><span class="p">,</span> <span class="n" style="color: #333;">msg</span><span class="p">)</span></span>
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833
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<pre style="margin: 0;">+<span id="LC833" class="line" lang="python"></span>
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834
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<pre style="margin: 0;">+<span id="LC834" class="line" lang="python"></span>
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813
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835
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<pre style="margin: 0;"> <span id="LC835" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">biomaj_client_action</span><span class="p">(</span><span class="n" style="color: #333;">options</span><span class="p">,</span> <span class="n" style="color: #333;">config</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">):</span></span>
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<pre style="margin: 0;"> <span id="LC836" class="line" lang="python"> <span class="n" style="color: #333;">check_options</span><span class="p">(</span><span class="n" style="color: #333;">options</span><span class="p">,</span> <span class="n" style="color: #333;">config</span><span class="p">)</span></span>
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837
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<pre style="margin: 0;"> <span id="LC837" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">options</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">version</span><span class="p">:</span></span>
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838
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<pre style="margin: 0;"> <span id="LC838" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">biomaj_version</span><span class="p">(</span><span class="n" style="color: #333;">options</span><span class="p">,</span> <span class="n" style="color: #333;">config</span><span class="p">)</span></span>
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839
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<pre style="margin: 0;"> <span id="LC839" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC840" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">options</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">history</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC841" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">biomaj_history</span><span class="p">(</span><span class="n" style="color: #333;">options</span><span class="p">,</span> <span class="n" style="color: #333;">config</span><span class="p">)</span></span>
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842
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<pre style="margin: 0;">+<span id="LC842" class="line" lang="python"></span>
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843
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<pre style="margin: 0;"> <span id="LC843" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">options</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">stats</span><span class="p">:</span></span>
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819
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844
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<pre style="margin: 0;"> <span id="LC844" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">biomaj_stats</span><span class="p">(</span><span class="n" style="color: #333;">options</span><span class="p">,</span> <span class="n" style="color: #333;">config</span><span class="p">)</span></span>
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820
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845
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<pre style="margin: 0;"> <span id="LC845" class="line" lang="python"></span>
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<a href="https://salsa.debian.org/med-team/biomaj3-daemon/compare/433773ba49ed787282e460d862da1515ea964e5a...fb7b94d764d121f120704485858fddba95d11aa7#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">biomaj3-daemon (3.0.1<span class="idiff left right">4-2) UNRELEASED</span>; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">biomaj3-daemon (3.0.1<span class="idiff left right">7-1) unstable</span>; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> [ Jelmer Vernooij ]</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> * Use secure copyright file specification URI.</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"> * Trim trailing whitespace.</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> -- Jelmer Vernooij <jelmer@debian.org> Sat, 20 Oct 2018 13:15:27 +0000</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> [ Olivier Sallou ]</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> * New upstream release</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> -- Olivier Sallou <osallou@debian.org> Thu, 25 Oct 2018 09:23:42 +0000</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext">biomaj3-daemon (3.0.14-1) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"></span>
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<a href="https://salsa.debian.org/med-team/biomaj3-daemon/compare/433773ba49ed787282e460d862da1515ea964e5a...fb7b94d764d121f120704485858fddba95d11aa7#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -23,8 +23,8 @@ Build-Depends: debhelper (>= 9), dh-python,</td>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> python3-biomaj3</span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext">Standards-Version: 4.1.3</span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext">Homepage: https://github.com/genouest/biomaj-daemon</span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="plaintext">Vcs-Browser: https://<span class="idiff left right">anonscm.debian.org/cgit/debian-med/biomaj3-daemon.git</span></span>
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="plaintext">Vcs-Git: https://<span class="idiff left right">anonscm.debian.org/git/debian-med</span>/biomaj3-daemon.git</span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext">Vcs-Browser: https://<span class="idiff left right">salsa.debian.org/med-team/biomaj3-daemon</span></span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext">Vcs-Git: https://<span class="idiff left right">salsa.debian.org/med-team</span>/biomaj3-daemon.git</span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext">Package: python3-biomaj3-daemon</span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext">Architecture: all</span>
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<a href="https://salsa.debian.org/med-team/biomaj3-daemon/compare/433773ba49ed787282e460d862da1515ea964e5a...fb7b94d764d121f120704485858fddba95d11aa7#19359a61ae2446b51b549167b014da2fcf265768"><strong>requirements.txt</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -8,3 +8,4 @@ python-consul</td>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"><a href="https://pypi.python.org/pypi/prometheus_client" rel="nofollow noreferrer noopener" target="_blank">prometheus_client</a>>=0.0.18</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"><a href="https://pypi.python.org/pypi/requests" rel="nofollow noreferrer noopener" target="_blank">requests</a></span>
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<td class="diff-line-num new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"><a href="https://pypi.python.org/pypi/biomaj-core" rel="nofollow noreferrer noopener" target="_blank">biomaj-core</a>>=3.0.10</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"><a href="https://pypi.python.org/pypi/biomaj" rel="nofollow noreferrer noopener" target="_blank">biomaj</a>>=3.1.6</span></pre>
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<a href="https://salsa.debian.org/med-team/biomaj3-daemon/compare/433773ba49ed787282e460d862da1515ea964e5a...fb7b94d764d121f120704485858fddba95d11aa7#8e2edce0d507e1297474f25c00cae94258db38d8"><strong>setup.py</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -21,7 +21,7 @@ config = {</td>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="python"> <span class="s" style="color: #d14;">'url'</span><span class="p">:</span> <span class="s" style="color: #d14;">'http://biomaj.genouest.org'</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="python"> <span class="s" style="color: #d14;">'download_url'</span><span class="p">:</span> <span class="s" style="color: #d14;">'http://biomaj.genouest.org'</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="python"> <span class="s" style="color: #d14;">'author_email'</span><span class="p">:</span> <span class="s" style="color: #d14;">'olivier.sallou@irisa.fr'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="python"> <span class="s" style="color: #d14;">'version'</span><span class="p">:</span> <span class="s" style="color: #d14;">'3.0.1<span class="idiff left right">4</span>'</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="python"> <span class="s" style="color: #d14;">'version'</span><span class="p">:</span> <span class="s" style="color: #d14;">'3.0.1<span class="idiff left right">7</span>'</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="python"> <span class="s" style="color: #d14;">'classifiers'</span><span class="p">:</span> <span class="p">[</span></span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># How mature is this project? Common values are</span></span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># 3 - Alpha</span></span>
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