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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/ngopt-bins">Debian Med / ngopt-bins</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/ngopt-bins/commit/edb2640b160a5647258d637116f44f0f453cff95">edb2640b</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-26T06:03:04Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 0.0.20150522</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ngopt-bins/commit/04f46a96ce4d3cc1e5d94a820484c65462a5a8ba">04f46a96</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-26T06:03:34Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/0.0.20150522'
Update to upstream version '0.0.20150522'
with Debian dir 103deec8094d13a61ade9541a070f0f3406ab891</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ngopt-bins/commit/83bface175bcf736d5ae1bd09dcae710b8709acb">83bface1</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-26T06:19:16Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 0.0.20160825</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ngopt-bins/commit/963c52f843c4688523a59c6a8d21901be3ee5a76">963c52f8</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-26T06:19:39Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Updated version 0.0.20160825 from 'upstream/0.0.20160825'
with Debian dir 103deec8094d13a61ade9541a070f0f3406ab891</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ngopt-bins/commit/e0fec269e78e51ed8c216f7fae9e2aa4e711c5ef">e0fec269</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-26T06:22:02Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream release
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ngopt-bins/commit/19eb98930cfdb594361997cc88f318c49b551c6f">19eb9893</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-26T06:53:35Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">The binary version of sga shipped with ngopt was segfaulting under certain conditions. Thus sga is replaced by the Debian packaged version.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ngopt-bins/commit/0c5b73891e654b8311c34d32dd665781de6b984d">0c5b7389</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-26T09:13:53Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Test script does not run if sga is deactivated
</pre>
</li>
</ul>
<h4>14 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#fda3484edf8db0684440157ce0b110d784d42704">
<span class="new-file">
+
README.txt
</span>
</a>
</li>
<li class="file-stats">
<a href="#b87f410759aad9ccad0d93bc58bb840ea4c201b2">
<span class="new-file">
+
adapter.fasta
</span>
</a>
</li>
<li class="file-stats">
<a href="#b6ed8b3699e6513f3cfc7444c3c79349519462c8">
<span class="new-file">
+
bin/A5qc.jar
</span>
</a>
</li>
<li class="file-stats">
<a href="#5cd58eb57f55265b36e9705b8cf3a5eb31037f57">
<span class="new-file">
+
bin/GetInsertSize.jar
</span>
</a>
</li>
<li class="file-stats">
<a href="#864fd2d6025e11e5ee4d37664f79d9276f808219">
<span class="new-file">
+
bin/SSPACE/SSPACE
</span>
</a>
</li>
<li class="file-stats">
<a href="#b2c381acbe3f70190dd282408d8e171d9ec72cb7">
<span class="new-file">
+
bin/SSPACE/bin/ExtendOrFormatContigs.pl
</span>
</a>
</li>
<li class="file-stats">
<a href="#a2c71157394dcad214624a6a89584afba9f95752">
<span class="new-file">
+
bin/SSPACE/bin/PairingAndScaffolding.pl
</span>
</a>
</li>
<li class="file-stats">
<a href="#d6bdbaf815bf5e03e5ca35fb2c82726530e858d2">
<span class="new-file">
+
bin/SSPACE/bin/mapWithBowtie.pl
</span>
</a>
</li>
<li class="file-stats">
<a href="#f3269e64f01b8c5f7ed2f89a086d329069c3ca95">
<span class="new-file">
+
bin/SSPACE/bin/readLibFiles.pl
</span>
</a>
</li>
<li class="file-stats">
<a href="#071c1ad8166ccd92fbfa48d37afac282238e4610">
<span class="new-file">
+
bin/SSPACE/bowtie/bowtie
</span>
</a>
</li>
<li class="file-stats">
<a href="#6a697e8e90958b3099632cda4e7d78669d058c07">
<span class="new-file">
+
bin/SSPACE/bowtie/bowtie-build
</span>
</a>
</li>
<li class="file-stats">
<a href="#fa7cdc3f7c9e7dcb39abbf0e936c2426f4bd941a">
<span class="new-file">
+
bin/SSPACE/dotlib/DotLib.pm
</span>
</a>
</li>
<li class="file-stats">
<a href="#60a20057977f8e8b3347311662f19d99153c26c8">
<span class="new-file">
+
bin/SSPACE/dotlib/getopts.pl
</span>
</a>
</li>
<li class="file-stats">
<a href="#09c7dcc7b00e5168f5a5600902188af033bdb985">
<span class="new-file">
+
bin/SSPACE/dotlib/svn-commit.tmp
</span>
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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