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<h3>
Liubov Chuprikova pushed to branch master
at <a href="https://salsa.debian.org/med-team/qiime">Debian Med / qiime</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/qiime/commit/b5e6ad5397315c362d3e0dbc1a1362efa2b718be">b5e6ad53</a></strong>
<div>
<span>by Liubov Chuprikova</span>
<i>at 2018-10-28T13:52:41Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Make .egg-info available for build time tests
</pre>
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<h4>7 changed files:</h4>
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#08ada6dded722c3d38b433b633b1bad0d94a498f">
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−
debian/qiime-data.install
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<a href="#f2ef34137f34e8e79d7b9158b69994852b7a4903">
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debian/qiime-doc.install
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<a href="#7721fdb7b6390412ae1e25e59089dad6e685c7f2">
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−
debian/qiime.install
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<a href="#f37295b8cad0ef6b5eb429ace834f82457eb043a">
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−
debian/qiime.manpages
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<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/qiime/commit/b5e6ad5397315c362d3e0dbc1a1362efa2b718be#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">qiime (2018.8.0-1) UNRELEASED; urgency=medium</span>
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> [ Andreas Tille ]</span>
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<td class="diff-line-num new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> * Switch to Qiime2</span>
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<td class="diff-line-num old_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"> - Adapt watch file</span>
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<td class="diff-line-num new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"> - Point Homepage to Qiime2</span>
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<td class="diff-line-num old_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> [ Liubov Chuprikova ]</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> * Make .egg-info available for build time tests</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"></span>
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<td class="diff-line-num new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Fri, 19 Oct 2018 15:20:48 +0200</span>
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<td class="diff-line-num new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"></span>
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<td class="diff-line-num old_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext">qiime (1.9.1+dfsg-3) unstable; urgency=medium</span>
</pre>
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<br>
</li>
<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/qiime/commit/b5e6ad5397315c362d3e0dbc1a1362efa2b718be#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<table class="code white" style="font-family: monospace; font-size: 90%;" bgcolor="#fff" width="100%" cellpadding="0" cellspacing="0">
<tr class="line_holder match" id="" style="line-height: 1.6;">
<td class="diff-line-num unfold js-unfold old_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -13,7 +13,6 @@ Build-Depends: debhelper (>= 11~),</td>
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<td class="diff-line-num new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> python3-bibtexparser,</span>
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<td class="diff-line-num old_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> python3-decorator,</span>
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<td class="diff-line-num old_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> python3-pandas,</span>
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<td class="diff-line-num old old_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="diff-line-num new_line old" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext"> python3-pkg-resources,</span>
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<td class="diff-line-num old_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> python3-tzlocal,</span>
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<td class="diff-line-num old_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> python3-yaml</span>
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<td class="diff-line-num old_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext">Standards-Version: 4.1.5</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="32" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="31" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -32,7 +31,7 @@ Depends: ${shlibs:Depends},</td>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> python3-numpy,</span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> python3-pandas,</span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> python3-tzlocal,</span>
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="plaintext"> python3-yaml</span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="plaintext"> python3-yaml<span class="idiff left right">,</span></span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"> python-burrito,</span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"> python-burrito-fillings (>= 0.1.1),</span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> python-biom-format,</span>
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<li id="08ada6dded722c3d38b433b633b1bad0d94a498f">
<a href="https://salsa.debian.org/med-team/qiime/commit/b5e6ad5397315c362d3e0dbc1a1362efa2b718be#08ada6dded722c3d38b433b633b1bad0d94a498f"><strong>debian/qiime-data.install</strong>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="php"><span class="nx">qiime_test_data</span><span class="o" style="font-weight: 600;">/</span><span class="nx">align_seqs</span><span class="o" style="font-weight: 600;">/</span><span class="nx">core_set_aligned</span><span class="o" style="font-weight: 600;">.</span><span class="nx">fasta</span><span class="o" style="font-weight: 600;">.</span><span class="nx">imputed</span> <span class="o" style="font-weight: 600;">/</span><span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">share</span><span class="o" style="font-weight: 600;">/</span><span class="nx">qiime</span><span class="o" style="font-weight: 600;">/</span><span class="nx">data</span></span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="php"><span class="c1" style="color: #998; font-style: italic;">#qiime_test_data/filter_alignment/lanemask_in_1s_and_0s /usr/share/qiime/data</span></span></pre>
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<a href="https://salsa.debian.org/med-team/qiime/commit/b5e6ad5397315c362d3e0dbc1a1362efa2b718be#f2ef34137f34e8e79d7b9158b69994852b7a4903"><strong>debian/qiime-doc.install</strong>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="php"><span class="nx">examples</span><span class="o" style="font-weight: 600;">/</span> <span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">share</span><span class="o" style="font-weight: 600;">/</span><span class="nx">doc</span><span class="o" style="font-weight: 600;">/</span><span class="nx">qiime</span></span>
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2
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="php"><span class="nx">doc</span><span class="o" style="font-weight: 600;">/</span><span class="nx">_build</span><span class="o" style="font-weight: 600;">/*</span> <span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">share</span><span class="o" style="font-weight: 600;">/</span><span class="nx">doc</span><span class="o" style="font-weight: 600;">/</span><span class="nx">qiime</span></span>
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3
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="php"><span class="nx">qiime</span><span class="o" style="font-weight: 600;">/</span><span class="nx">support_files</span><span class="o" style="font-weight: 600;">/</span><span class="nx">denoiser</span><span class="o" style="font-weight: 600;">/</span><span class="nx">TestData</span> <span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">lib</span><span class="o" style="font-weight: 600;">/</span><span class="nx">qiime</span><span class="o" style="font-weight: 600;">/</span><span class="nx">support_files</span><span class="o" style="font-weight: 600;">/</span><span class="nx">denoiser</span></span></pre>
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<a href="https://salsa.debian.org/med-team/qiime/commit/b5e6ad5397315c362d3e0dbc1a1362efa2b718be#7721fdb7b6390412ae1e25e59089dad6e685c7f2"><strong>debian/qiime.install</strong>
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1
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="php"><span class="nx">debian</span><span class="o" style="font-weight: 600;">/</span><span class="nx">qiime_config</span> <span class="nx">etc</span><span class="o" style="font-weight: 600;">/</span><span class="nx">qiime</span></span>
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2
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="php"><span class="nx">debian</span><span class="o" style="font-weight: 600;">/</span><span class="nx">scripts</span><span class="o" style="font-weight: 600;">/</span><span class="nx">qiime</span> <span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">bin</span></span>
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3
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="php"><span class="nx">debian</span><span class="o" style="font-weight: 600;">/</span><span class="nx">scripts</span><span class="o" style="font-weight: 600;">/</span><span class="nx">shell</span><span class="o" style="font-weight: 600;">/*</span> <span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">lib</span><span class="o" style="font-weight: 600;">/</span><span class="nx">qiime</span><span class="o" style="font-weight: 600;">/</span><span class="nx">shell</span></span>
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4
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="php"><span class="nx">debian</span><span class="o" style="font-weight: 600;">/</span><span class="nx">scripts</span><span class="o" style="font-weight: 600;">/</span><span class="nx">shell</span><span class="o" style="font-weight: 600;">/.</span><span class="p">[</span><span class="nx">bz</span><span class="p">]</span><span class="o" style="font-weight: 600;">*</span> <span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">lib</span><span class="o" style="font-weight: 600;">/</span><span class="nx">qiime</span><span class="o" style="font-weight: 600;">/</span><span class="nx">shell</span></span>
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5
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="php"><span class="nx">debian</span><span class="o" style="font-weight: 600;">/</span><span class="nx">scripts</span><span class="o" style="font-weight: 600;">/</span><span class="nx">uclust</span> <span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">lib</span><span class="o" style="font-weight: 600;">/</span><span class="nx">qiime</span><span class="o" style="font-weight: 600;">/</span><span class="nx">bin</span></span>
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6
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="php"><span class="nx">debian</span><span class="o" style="font-weight: 600;">/</span><span class="nx">scripts</span><span class="o" style="font-weight: 600;">/</span><span class="nx">usearch</span><span class="o" style="font-weight: 600;">*</span> <span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">lib</span><span class="o" style="font-weight: 600;">/</span><span class="nx">qiime</span><span class="o" style="font-weight: 600;">/</span><span class="nx">bin</span></span>
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7
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="php"><span class="nx">debian</span><span class="o" style="font-weight: 600;">/</span><span class="nx">scripts</span><span class="o" style="font-weight: 600;">/</span><span class="k" style="font-weight: 600;">print</span><span class="o" style="font-weight: 600;">*</span> <span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">lib</span><span class="o" style="font-weight: 600;">/</span><span class="nx">qiime</span><span class="o" style="font-weight: 600;">/</span><span class="nx">bin</span></span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="php"><span class="nx">debian</span><span class="o" style="font-weight: 600;">/</span><span class="nx">scripts</span><span class="o" style="font-weight: 600;">/</span><span class="nx">ParsInsert</span> <span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">lib</span><span class="o" style="font-weight: 600;">/</span><span class="nx">qiime</span><span class="o" style="font-weight: 600;">/</span><span class="nx">bin</span></span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="php"><span class="nx">debian</span><span class="o" style="font-weight: 600;">/</span><span class="nx">scripts</span><span class="o" style="font-weight: 600;">/</span><span class="nx">FastTree</span> <span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">lib</span><span class="o" style="font-weight: 600;">/</span><span class="nx">qiime</span><span class="o" style="font-weight: 600;">/</span><span class="nx">bin</span></span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="php"><span class="nx">debian</span><span class="o" style="font-weight: 600;">/</span><span class="nx">scripts</span><span class="o" style="font-weight: 600;">/*.</span><span class="nx">py</span> <span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">lib</span><span class="o" style="font-weight: 600;">/</span><span class="nx">qiime</span><span class="o" style="font-weight: 600;">/</span><span class="nx">bin</span></span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="php"><span class="nx">debian</span><span class="o" style="font-weight: 600;">/</span><span class="nx">tmp</span><span class="o" style="font-weight: 600;">/</span><span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">bin</span><span class="o" style="font-weight: 600;">/*.</span><span class="nx">py</span> <span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">lib</span><span class="o" style="font-weight: 600;">/</span><span class="nx">qiime</span><span class="o" style="font-weight: 600;">/</span><span class="nx">bin</span></span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="php"><span class="nx">qiime</span><span class="o" style="font-weight: 600;">/</span><span class="nx">support_files</span><span class="o" style="font-weight: 600;">/</span><span class="nx">denoiser</span><span class="o" style="font-weight: 600;">/</span><span class="nx">FlowgramAlignment</span><span class="o" style="font-weight: 600;">/</span><span class="nx">FlowgramAli_4frame</span> <span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">lib</span><span class="o" style="font-weight: 600;">/</span><span class="nx">qiime</span><span class="o" style="font-weight: 600;">/</span><span class="nx">support_files</span><span class="o" style="font-weight: 600;">/</span><span class="nx">denoiser</span><span class="o" style="font-weight: 600;">/</span><span class="nx">bin</span></span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="php"><span class="nx">qiime</span><span class="o" style="font-weight: 600;">/*.</span><span class="nx">py</span> <span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">share</span><span class="o" style="font-weight: 600;">/</span><span class="nx">pyshared</span><span class="o" style="font-weight: 600;">/</span><span class="nx">qiime</span></span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="php"><span class="nx">qiime</span><span class="o" style="font-weight: 600;">/</span><span class="nx">denoiser</span> <span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">share</span><span class="o" style="font-weight: 600;">/</span><span class="nx">pyshared</span><span class="o" style="font-weight: 600;">/</span><span class="nx">qiime</span></span>
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15
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="php"><span class="nx">qiime</span><span class="o" style="font-weight: 600;">/</span><span class="nx">parallel</span> <span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">share</span><span class="o" style="font-weight: 600;">/</span><span class="nx">pyshared</span><span class="o" style="font-weight: 600;">/</span><span class="nx">qiime</span></span>
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16
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="php"><span class="nx">qiime</span><span class="o" style="font-weight: 600;">/</span><span class="nx">workflow</span> <span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">share</span><span class="o" style="font-weight: 600;">/</span><span class="nx">pyshared</span><span class="o" style="font-weight: 600;">/</span><span class="nx">qiime</span></span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="php"><span class="nx">qiime</span><span class="o" style="font-weight: 600;">/</span><span class="nx">pycogent_backports</span> <span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">share</span><span class="o" style="font-weight: 600;">/</span><span class="nx">pyshared</span><span class="o" style="font-weight: 600;">/</span><span class="nx">qiime</span></span>
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18
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="php"><span class="nx">qiime</span><span class="o" style="font-weight: 600;">/</span><span class="nx">support_files</span><span class="o" style="font-weight: 600;">/</span><span class="nx">denoiser</span><span class="o" style="font-weight: 600;">/</span><span class="nx">Data</span> <span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">share</span><span class="o" style="font-weight: 600;">/</span><span class="nx">qiime</span><span class="o" style="font-weight: 600;">/</span><span class="nx">support_files</span><span class="o" style="font-weight: 600;">/</span><span class="nx">denoiser</span></span>
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19
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="php"><span class="nx">qiime</span><span class="o" style="font-weight: 600;">/</span><span class="nx">support_files</span><span class="o" style="font-weight: 600;">/</span><span class="nx">css</span><span class="o" style="font-weight: 600;">/*</span> <span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">share</span><span class="o" style="font-weight: 600;">/</span><span class="nx">qiime</span><span class="o" style="font-weight: 600;">/</span><span class="nx">support_files</span><span class="o" style="font-weight: 600;">/</span><span class="nx">css</span></span>
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20
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="php"><span class="nx">qiime</span><span class="o" style="font-weight: 600;">/</span><span class="nx">support_files</span><span class="o" style="font-weight: 600;">/</span><span class="nx">images</span><span class="o" style="font-weight: 600;">/*</span> <span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">share</span><span class="o" style="font-weight: 600;">/</span><span class="nx">qiime</span><span class="o" style="font-weight: 600;">/</span><span class="nx">support_files</span><span class="o" style="font-weight: 600;">/</span><span class="nx">images</span></span>
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21
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="php"><span class="nx">qiime</span><span class="o" style="font-weight: 600;">/</span><span class="nx">support_files</span><span class="o" style="font-weight: 600;">/</span><span class="nx">R</span><span class="o" style="font-weight: 600;">/*</span> <span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">share</span><span class="o" style="font-weight: 600;">/</span><span class="nx">qiime</span><span class="o" style="font-weight: 600;">/</span><span class="nx">support_files</span><span class="o" style="font-weight: 600;">/</span><span class="nx">R</span></span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="php"><span class="nx">qiime</span><span class="o" style="font-weight: 600;">/</span><span class="nx">support_files</span><span class="o" style="font-weight: 600;">/</span><span class="nx">js</span><span class="o" style="font-weight: 600;">/*</span> <span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">share</span><span class="o" style="font-weight: 600;">/</span><span class="nx">qiime</span><span class="o" style="font-weight: 600;">/</span><span class="nx">support_files</span><span class="o" style="font-weight: 600;">/</span><span class="nx">js</span></span></pre>
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<a href="https://salsa.debian.org/med-team/qiime/commit/b5e6ad5397315c362d3e0dbc1a1362efa2b718be#f37295b8cad0ef6b5eb429ace834f82457eb043a"><strong>debian/qiime.manpages</strong>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">debian/*.1</span></pre>
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<a href="https://salsa.debian.org/med-team/qiime/commit/b5e6ad5397315c362d3e0dbc1a1362efa2b718be#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -5,14 +5,15 @@</td>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">include /usr/share/dpkg/default.mk</span>
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7
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7
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"></span>
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8
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext">export QIIMETEST=1</span>
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<td class="diff-line-num old old_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
9
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"></span>
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10
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext">export DEB_BUILD_MAINT_OPTIONS=hardening=+all</span>
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11
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9
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"></span>
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10
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"># For testing, we need .egg-info so the entry points are available.</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext">export PYBUILD_BEFORE_TEST=python{version} setup.py develop --install-dir {build_dir}</span>
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12
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"># Delete .egg-info and other files that were generated along with .egg-info</span>
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13
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext">export PYBUILD_AFTER_TEST=rm -rf {build_dir}/qiime2.egg-* {build_dir}/site.py</span>
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14
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"></span>
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12
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext">%:</span>
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13
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> dh $@ --with python3 --buildsystem=pybuild</span>
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14
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17
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"></span>
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15
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18
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext">override_dh_auto_test:</span>
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16
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext">ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))</span>
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17
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext"> QIIMETEST=1 dh_auto_test</span>
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18
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext">endif</span></pre>
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> dh_auto_test -- -s custom --test-args="cd {build_dir}; QIIMETEST= nosetests3"</span></pre>
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