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<h3>
Andreas Tille pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/dazzdb">Debian Med / dazzdb</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/dazzdb/commit/d9350062a729e5294b2ca4cd106570d00dfe4719">d9350062</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-28T09:26:00Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.0+git20180908.0bd5e07</pre>
</li>
</ul>
<h4>13 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#6407fdc9486c8e6aa79cf351ff654d7d52db3b20">
Catrack.c
</a>
</li>
<li class="file-stats">
<a href="#ed02d58d3455cbe035c95417382b0c9bdc399468">
DB.c
</a>
</li>
<li class="file-stats">
<a href="#cb13c080264e286f3eb9724d1d01e9d79f06a51f">
DB.h
</a>
</li>
<li class="file-stats">
<a href="#ed26045d610bc9948c14331e420a879741ab23b9">
DBdump.c
</a>
</li>
<li class="file-stats">
<a href="#2456ffbd82dfc564b429e812bec9350385d98542">
DBdust.c
</a>
</li>
<li class="file-stats">
<a href="#e4e185d9781b49cb1401e85bacb2fec298fdb5dc">
DBshow.c
</a>
</li>
<li class="file-stats">
<a href="#9c4bce755c62bfe91cf1d9e48fde88ab13d7a571">
DBsplit.c
</a>
</li>
<li class="file-stats">
<a href="#9b8d8540f0e007b90a606e9d2ce3f99684b63b9d">
DBtrim.c
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#02afd2c74fd77389e034be8f44a4c80ea7411fa7">
fasta2DAM.c
</a>
</li>
<li class="file-stats">
<a href="#b5cab68d6eebc9cd68768d35e160e1912182b9b3">
fasta2DB.c
</a>
</li>
<li class="file-stats">
<a href="#93a1d7e5e8c1f300773707aee1e47ebb8d3b20b7">
rangen.c
</a>
</li>
<li class="file-stats">
<a href="#33eb1ec085b7ca1ed510c809278a394776924c69">
simulator.c
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="6407fdc9486c8e6aa79cf351ff654d7d52db3b20">
<a href="https://salsa.debian.org/med-team/dazzdb/commit/d9350062a729e5294b2ca4cd106570d00dfe4719#6407fdc9486c8e6aa79cf351ff654d7d52db3b20"><strong>Catrack.c</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="131" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="131" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -131,6 +131,7 @@ int main(int argc, char *argv[])</td>
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<td class="diff-line-num old_line" data-linenumber="131" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
131
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<td class="diff-line-num new_line" data-linenumber="131" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
131
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC131" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">nextra</span><span class="p">;</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="132" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
132
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<td class="diff-line-num new_line" data-linenumber="132" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
132
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC132" class="line" lang="c"> <span class="n" style="color: #333;">int64</span> <span class="n" style="color: #333;">extail</span><span class="p">;</span></span>
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<td class="diff-line-num old_line" data-linenumber="133" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
133
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<td class="diff-line-num new_line" data-linenumber="133" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
133
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<pre style="margin: 0;"> <span id="LC133" class="line" lang="c"></span>
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<td class="diff-line-num new old_line" data-linenumber="134" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="134" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
134
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC134" class="line" lang="c"> <span class="n" style="color: #333;">extra</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">;</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="134" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
134
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<td class="diff-line-num new_line" data-linenumber="135" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
135
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC135" class="line" lang="c"> <span class="n" style="color: #333;">anno</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">;</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="135" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
135
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<td class="diff-line-num new_line" data-linenumber="136" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
136
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC136" class="line" lang="c"> <span class="n" style="color: #333;">trackoff</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="136" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
136
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<td class="diff-line-num new_line" data-linenumber="137" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
137
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC137" class="line" lang="c"> <span class="n" style="color: #333;">tracktot</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">tracksiz</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span></span>
</pre>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="144" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="145" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -144,7 +145,7 @@ int main(int argc, char *argv[])</td>
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<td class="diff-line-num old_line" data-linenumber="144" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
144
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<td class="diff-line-num new_line" data-linenumber="145" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
145
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<pre style="margin: 0;"> <span id="LC145" class="line" lang="c"> <span class="k" style="font-weight: 600;">while</span> <span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">)</span></span>
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145
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<td class="diff-line-num new_line" data-linenumber="146" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
146
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<pre style="margin: 0;"> <span id="LC146" class="line" lang="c"> <span class="p">{</span> <span class="kt" style="color: #458; font-weight: 600;">FILE</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">dfile</span><span class="p">,</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">afile</span><span class="p">;</span></span>
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<td class="diff-line-num old_line" data-linenumber="146" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
146
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<td class="diff-line-num new_line" data-linenumber="147" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
147
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<pre style="margin: 0;"> <span id="LC147" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">dfile_name</span><span class="p">,</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">afile_name</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="147" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
147
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<td class="diff-line-num new_line old" data-linenumber="148" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC147" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">i</span><span class="p">,</span> <span class="n" style="color: #333;">size</span><span class="p">,</span> <span class="n" style="color: #333;">esize</span><span class="p">,</span> <span class="n" style="color: #333;">tracklen</span><span class="p">;</span></span>
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<td class="diff-line-num new old_line" data-linenumber="148" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="148" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
148
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<pre style="margin: 0;">+<span id="LC148" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">i</span><span class="p">,</span> <span class="n" style="color: #333;"><span class="idiff left">apos</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff right"> </span><span class="n" style="color: #333;">size</span><span class="p">,</span> <span class="n" style="color: #333;">esize</span><span class="p">,</span> <span class="n" style="color: #333;">tracklen</span><span class="p">;</span></span>
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<td class="diff-line-num old_line" data-linenumber="148" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
148
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<td class="diff-line-num new_line" data-linenumber="149" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
149
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<pre style="margin: 0;"> <span id="LC149" class="line" lang="c"></span>
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<td class="diff-line-num old_line" data-linenumber="149" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
149
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<td class="diff-line-num new_line" data-linenumber="150" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC150" class="line" lang="c"> <span class="n" style="color: #333;">afile_name</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">Strdup</span><span class="p">(</span><span class="n" style="color: #333;">Numbered_Suffix</span><span class="p">(</span><span class="n" style="color: #333;">prefix</span><span class="p">,</span><span class="n" style="color: #333;">nfiles</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="n" style="color: #333;">Catenate</span><span class="p">(</span><span class="s" style="color: #d14;">"."</span><span class="p">,</span><span class="n" style="color: #333;">argv</span><span class="p">[</span><span class="mi" style="color: #099;">2</span><span class="p">],</span><span class="s" style="color: #d14;">"."</span><span class="p">,</span><span class="s" style="color: #d14;">"anno"</span><span class="p">)),</span></span>
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<td class="diff-line-num old_line" data-linenumber="150" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
150
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<td class="diff-line-num new_line" data-linenumber="151" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
151
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<pre style="margin: 0;"> <span id="LC151" class="line" lang="c"> <span class="s" style="color: #d14;">"Allocating .anno file name"</span><span class="p">);</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="256" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="257" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -256,10 +257,11 @@ int main(int argc, char *argv[])</td>
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256
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257
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<pre style="margin: 0;"> <span id="LC257" class="line" lang="c"> <span class="p">}</span></span>
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257
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258
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<pre style="margin: 0;"> <span id="LC258" class="line" lang="c"></span>
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258
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259
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<pre style="margin: 0;"> <span id="LC259" class="line" lang="c"> <span class="n" style="color: #333;">FSEEKO</span><span class="p">(</span><span class="n" style="color: #333;">afile</span><span class="p">,</span><span class="mi" style="color: #099;">0</span><span class="p">,</span><span class="n" style="color: #333;">SEEK_END</span><span class="p">)</span></span>
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260
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<pre style="margin: 0;">+<span id="LC260" class="line" lang="c"> <span class="n" style="color: #333;">FTELLO</span><span class="p">(</span><span class="n" style="color: #333;">apos</span><span class="p">,</span><span class="n" style="color: #333;">afile</span><span class="p">)</span></span>
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259
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261
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<pre style="margin: 0;"> <span id="LC261" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">dfile</span> <span class="o" style="font-weight: 600;">!=</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">)</span></span>
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260
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<pre style="margin: 0;">-<span id="LC260" class="line" lang="c"> <span class="n" style="color: #333;">extail</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;"><span class="idiff left">FTELLO</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">afile</span></span><span class="p"><span class="idiff right">)</span></span> <span class="o" style="font-weight: 600;">-</span> <span class="p">(</span><span class="n" style="color: #333;">esize</span><span class="o" style="font-weight: 600;">*</span><span class="p">(</span><span class="n" style="color: #333;">tracklen</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">1</span><span class="p">)</span> <span class="o" style="font-weight: 600;">+</span> <span class="mi" style="color: #099;">2</span><span class="o" style="font-weight: 600;">*</span><span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">int</span><span class="p">));</span> </span>
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262
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<pre style="margin: 0;">+<span id="LC262" class="line" lang="c"> <span class="n" style="color: #333;">extail</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;"><span class="idiff left right">apos</span></span> <span class="o" style="font-weight: 600;">-</span> <span class="p">(</span><span class="n" style="color: #333;">esize</span><span class="o" style="font-weight: 600;">*</span><span class="p">(</span><span class="n" style="color: #333;">tracklen</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">1</span><span class="p">)</span> <span class="o" style="font-weight: 600;">+</span> <span class="mi" style="color: #099;">2</span><span class="o" style="font-weight: 600;">*</span><span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">int</span><span class="p">));</span> </span>
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261
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263
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<pre style="margin: 0;"> <span id="LC263" class="line" lang="c"> <span class="k" style="font-weight: 600;">else</span></span>
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262
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<pre style="margin: 0;">-<span id="LC262" class="line" lang="c"> <span class="n" style="color: #333;">extail</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;"><span class="idiff left">FTELLO</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">afile</span></span><span class="p"><span class="idiff right">)</span></span> <span class="o" style="font-weight: 600;">-</span> <span class="p">(</span><span class="n" style="color: #333;">esize</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">tracklen</span> <span class="o" style="font-weight: 600;">+</span> <span class="mi" style="color: #099;">2</span><span class="o" style="font-weight: 600;">*</span><span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">int</span><span class="p">));</span> </span>
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264
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<pre style="margin: 0;">+<span id="LC264" class="line" lang="c"> <span class="n" style="color: #333;">extail</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;"><span class="idiff left right">apos</span></span> <span class="o" style="font-weight: 600;">-</span> <span class="p">(</span><span class="n" style="color: #333;">esize</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">tracklen</span> <span class="o" style="font-weight: 600;">+</span> <span class="mi" style="color: #099;">2</span><span class="o" style="font-weight: 600;">*</span><span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">int</span><span class="p">));</span> </span>
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263
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265
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<pre style="margin: 0;"> <span id="LC265" class="line" lang="c"> <span class="n" style="color: #333;">FSEEKO</span><span class="p">(</span><span class="n" style="color: #333;">afile</span><span class="p">,</span><span class="o" style="font-weight: 600;">-</span><span class="n" style="color: #333;">extail</span><span class="p">,</span><span class="n" style="color: #333;">SEEK_END</span><span class="p">)</span></span>
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264
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266
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<pre style="margin: 0;"> <span id="LC266" class="line" lang="c"></span>
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265
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267
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<pre style="margin: 0;"> <span id="LC267" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">extail</span> <span class="o" style="font-weight: 600;">>=</span> <span class="mi" style="color: #099;">20</span><span class="p">)</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="338" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="340" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -338,16 +340,16 @@ int main(int argc, char *argv[])</td>
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338
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340
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<pre style="margin: 0;"> <span id="LC340" class="line" lang="c"> <span class="n" style="color: #333;">FWRITE</span><span class="p">(</span><span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">tracksiz</span><span class="p">,</span><span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">int</span><span class="p">),</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="n" style="color: #333;">aout</span><span class="p">)</span></span>
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339
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341
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<pre style="margin: 0;"> <span id="LC341" class="line" lang="c"> <span class="p">}</span></span>
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340
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342
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<pre style="margin: 0;"> <span id="LC342" class="line" lang="c"> <span class="p">}</span></span>
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341
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<pre style="margin: 0;">-<span id="LC341" class="line" lang="c"> </span>
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342
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<pre style="margin: 0;">-<span id="LC342" class="line" lang="c"> <span class="n" style="color: #333;">FCLOSE</span><span class="p">(</span><span class="n" style="color: #333;">aout</span><span class="p">);</span></span>
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343
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<pre style="margin: 0;">-<span id="LC343" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">dout</span> <span class="o" style="font-weight: 600;">!=</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">)</span></span>
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344
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<pre style="margin: 0;">-<span id="LC344" class="line" lang="c"> <span class="n" style="color: #333;">FCLOSE</span><span class="p">(</span><span class="n" style="color: #333;">dout</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC343" class="line" lang="c"></span>
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346
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<pre style="margin: 0;"> <span id="LC344" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">nfiles</span> <span class="o" style="font-weight: 600;">!=</span> <span class="n" style="color: #333;">nblocks</span><span class="p">)</span></span>
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347
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<pre style="margin: 0;"> <span id="LC345" class="line" lang="c"> <span class="p">{</span> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stderr</span><span class="p">,</span><span class="s" style="color: #d14;">"%s: Did not catenate all tracks of DB (nfiles %d != nblocks %d)</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">,</span></span>
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348
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346
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<pre style="margin: 0;"> <span id="LC346" class="line" lang="c"> <span class="n" style="color: #333;">Prog_Name</span><span class="p">,</span> <span class="n" style="color: #333;">nfiles</span><span class="p">,</span> <span class="n" style="color: #333;">nblocks</span><span class="p">);</span></span>
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349
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347
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<pre style="margin: 0;"> <span id="LC347" class="line" lang="c"> <span class="k" style="font-weight: 600;">goto</span> <span class="n" style="color: #333;">error</span><span class="p">;</span></span>
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350
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348
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<pre style="margin: 0;"> <span id="LC348" class="line" lang="c"> <span class="p">}</span></span>
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349
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<pre style="margin: 0;">+<span id="LC349" class="line" lang="c"> </span>
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<pre style="margin: 0;">+<span id="LC350" class="line" lang="c"> <span class="n" style="color: #333;">FCLOSE</span><span class="p">(</span><span class="n" style="color: #333;">aout</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC351" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">dout</span> <span class="o" style="font-weight: 600;">!=</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">)</span></span>
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352
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<pre style="margin: 0;">+<span id="LC352" class="line" lang="c"> <span class="n" style="color: #333;">FCLOSE</span><span class="p">(</span><span class="n" style="color: #333;">dout</span><span class="p">);</span></span>
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351
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353
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<pre style="margin: 0;"> <span id="LC353" class="line" lang="c"></span>
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352
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354
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<pre style="margin: 0;"> <span id="LC354" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">DELETE</span><span class="p">)</span></span>
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353
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355
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<pre style="margin: 0;"> <span id="LC355" class="line" lang="c"> <span class="p">{</span> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">i</span><span class="p">;</span></span>
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<li id="ed02d58d3455cbe035c95417382b0c9bdc399468">
<a href="https://salsa.debian.org/med-team/dazzdb/commit/d9350062a729e5294b2ca4cd106570d00dfe4719#ed02d58d3455cbe035c95417382b0c9bdc399468"><strong>DB.c</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -17,6 +17,8 @@</td>
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17
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17
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include <ctype.h></span></span>
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18
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18
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include <unistd.h></span></span>
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19
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19
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include <dirent.h></span></span>
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20
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include <limits.h></span></span>
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21
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include <sys/stat.h></span></span>
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20
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22
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="c"></span>
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21
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23
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include "DB.h"</span></span>
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22
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24
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="c"></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="599" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="601" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -599,8 +601,8 @@ error:</td>
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<pre style="margin: 0;"> <span id="LC601" class="line" lang="c"><span class="c1" style="color: #998; font-style: italic;">// for the retained reads.</span></span>
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<pre style="margin: 0;"> <span id="LC602" class="line" lang="c"></span>
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<pre style="margin: 0;"> <span id="LC603" class="line" lang="c"><span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="nf" style="color: #900; font-weight: 600;">Trim_DB</span><span class="p">(</span><span class="n" style="color: #333;">DAZZ_DB</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">db</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC602" class="line" lang="c"><span class="p">{</span> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">i</span><span class="p">,</span> <span class="n" style="color: #333;">j</span><span class="p">,</span> <span class="n" style="color: #333;">r</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC603" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">allflag</span><span class="p">,</span> <span class="n" style="color: #333;">cutoff</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC604" class="line" lang="c"><span class="p">{</span> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">i</span><span class="p">,</span> <span class="n" style="color: #333;">j</span><span class="p">,</span> <span class="n" style="color: #333;">r</span><span class="p"><span class="idiff left">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff right">f</span></span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC605" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">allflag</span><span class="p">,</span> <span class="n" style="color: #333;">cutoff</span><span class="p"><span class="idiff left">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff right">css</span></span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC606" class="line" lang="c"> <span class="n" style="color: #333;">int64</span> <span class="n" style="color: #333;">totlen</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC607" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">maxlen</span><span class="p">,</span> <span class="n" style="color: #333;">nreads</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC608" class="line" lang="c"> <span class="n" style="color: #333;">DAZZ_TRACK</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">record</span><span class="p">;</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -676,14 +678,23 @@ void Trim_DB(DAZZ_DB *db)</td>
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<pre style="margin: 0;"> <span id="LC678" class="line" lang="c"> <span class="n" style="color: #333;">record</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">anno</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">Realloc</span><span class="p">(</span><span class="n" style="color: #333;">record</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">anno</span><span class="p">,</span><span class="n" style="color: #333;">record</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">size</span><span class="o" style="font-weight: 600;">*</span><span class="p">(</span><span class="n" style="color: #333;">j</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">1</span><span class="p">),</span><span class="nb" style="color: #0086b3;">NULL</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC679" class="line" lang="c"> <span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC680" class="line" lang="c"></span>
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<pre style="margin: 0;">+<span id="LC681" class="line" lang="c"> <span class="n" style="color: #333;">css</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC682" class="line" lang="c"> <span class="n" style="color: #333;">totlen</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">maxlen</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC683" class="line" lang="c"> <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span><span class="n" style="color: #333;">j</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">nreads</span><span class="p">;</span> <span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">++</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC681" class="line" lang="c"> <span class="p">{</span> <span class="n" style="color: #333;">r</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">reads</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">].</span><span class="n" style="color: #333;">rlen</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC682" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">((</span><span class="n" style="color: #333;">reads</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">].</span><span class="n" style="color: #333;">flags</span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">DB_BEST</span><span class="p">)</span> <span class="o" style="font-weight: 600;">>=</span> <span class="n" style="color: #333;">allflag</span> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">r</span> <span class="o" style="font-weight: 600;">>=</span> <span class="n" style="color: #333;">cutoff</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC684" class="line" lang="c"> <span class="p">{</span> <span class="n" style="color: #333;">f</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">reads</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">].</span><span class="n" style="color: #333;">flags</span><span class="p">;</span></span>
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685
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<pre style="margin: 0;">+<span id="LC685" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">((</span><span class="n" style="color: #333;">f</span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">DB_CSS</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">0</span><span class="p">)</span></span>
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686
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<pre style="margin: 0;">+<span id="LC686" class="line" lang="c"> <span class="n" style="color: #333;">css</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span></span>
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687
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<pre style="margin: 0;">+<span id="LC687" class="line" lang="c"> <span class="n" style="color: #333;">r</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">reads</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">].</span><span class="n" style="color: #333;">rlen</span><span class="p">;</span></span>
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688
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<pre style="margin: 0;">+<span id="LC688" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">((</span><span class="n" style="color: #333;">f</span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">DB_BEST</span><span class="p">)</span> <span class="o" style="font-weight: 600;">>=</span> <span class="n" style="color: #333;">allflag</span> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">r</span> <span class="o" style="font-weight: 600;">>=</span> <span class="n" style="color: #333;">cutoff</span><span class="p">)</span></span>
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683
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689
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<pre style="margin: 0;"> <span id="LC689" class="line" lang="c"> <span class="p">{</span> <span class="n" style="color: #333;">totlen</span> <span class="o" style="font-weight: 600;">+=</span> <span class="n" style="color: #333;">r</span><span class="p">;</span></span>
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684
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690
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<pre style="margin: 0;"> <span id="LC690" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">r</span> <span class="o" style="font-weight: 600;">></span> <span class="n" style="color: #333;">maxlen</span><span class="p">)</span></span>
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685
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691
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<pre style="margin: 0;"> <span id="LC691" class="line" lang="c"> <span class="n" style="color: #333;">maxlen</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">r</span><span class="p">;</span></span>
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686
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<pre style="margin: 0;">-<span id="LC686" class="line" lang="c"> <span class="n" style="color: #333;">reads</span><span class="p">[</span><span class="n" style="color: #333;">j</span><span class="o" style="font-weight: 600;">++</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">reads</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">];</span></span>
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692
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<pre style="margin: 0;">+<span id="LC692" class="line" lang="c"> <span class="n" style="color: #333;">reads</span><span class="p">[</span><span class="n" style="color: #333;">j</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">reads</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">];</span></span>
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693
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<pre style="margin: 0;">+<span id="LC693" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">css</span><span class="p">)</span></span>
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694
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<pre style="margin: 0;">+<span id="LC694" class="line" lang="c"> <span class="n" style="color: #333;">reads</span><span class="p">[</span><span class="n" style="color: #333;">j</span><span class="o" style="font-weight: 600;">++</span><span class="p">].</span><span class="n" style="color: #333;">flags</span> <span class="o" style="font-weight: 600;">|=</span> <span class="n" style="color: #333;">DB_CSS</span><span class="p">;</span></span>
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695
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<pre style="margin: 0;">+<span id="LC695" class="line" lang="c"> <span class="k" style="font-weight: 600;">else</span></span>
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696
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<pre style="margin: 0;">+<span id="LC696" class="line" lang="c"> <span class="n" style="color: #333;">reads</span><span class="p">[</span><span class="n" style="color: #333;">j</span><span class="o" style="font-weight: 600;">++</span><span class="p">].</span><span class="n" style="color: #333;">flags</span> <span class="o" style="font-weight: 600;">&=</span> <span class="o" style="font-weight: 600;">~</span><span class="n" style="color: #333;">DB_CSS</span><span class="p">;</span></span>
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697
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<pre style="margin: 0;">+<span id="LC697" class="line" lang="c"> <span class="n" style="color: #333;">css</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">1</span><span class="p">;</span></span>
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698
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<pre style="margin: 0;"> <span id="LC698" class="line" lang="c"> <span class="p">}</span></span>
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699
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<pre style="margin: 0;"> <span id="LC699" class="line" lang="c"> <span class="p">}</span></span>
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689
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700
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<pre style="margin: 0;"> <span id="LC700" class="line" lang="c"> </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1989" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2000" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1989,3 +2000,196 @@ void Print_Read(char *s, int width)</td>
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1989
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2000
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<pre style="margin: 0;"> <span id="LC2000" class="line" lang="c"> <span class="n" style="color: #333;">printf</span><span class="p">(</span><span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>
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1990
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2001
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<pre style="margin: 0;"> <span id="LC2001" class="line" lang="c"> <span class="p">}</span></span>
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1991
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2002
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<pre style="margin: 0;"> <span id="LC2002" class="line" lang="c"><span class="p">}</span></span>
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2003
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<pre style="margin: 0;">+<span id="LC2003" class="line" lang="c"></span>
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2004
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<pre style="margin: 0;">+<span id="LC2004" class="line" lang="c"></span>
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2005
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<pre style="margin: 0;">+<span id="LC2005" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;">/*******************************************************************************************</span></span>
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2006
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<pre style="margin: 0;">+<span id="LC2006" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;"> *</span></span>
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2007
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<pre style="margin: 0;">+<span id="LC2007" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;"> * COMMAND LINE BLOCK PARSER</span></span>
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2008
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<pre style="margin: 0;">+<span id="LC2008" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;"> * Take a command line argument and interpret the '@' block number ranges.</span></span>
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2009
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<pre style="margin: 0;">+<span id="LC2009" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;"> * Parse_Block_Arg produces an Block_Looper iterator object that can then</span></span>
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2010
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<pre style="margin: 0;">+<span id="LC2010" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;"> * be invoked multiple times to iterate through all the files implied by</span></span>
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2011
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<pre style="margin: 0;">+<span id="LC2011" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;"> * the @ pattern/range.</span></span>
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2012
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<pre style="margin: 0;">+<span id="LC2012" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;"> *</span></span>
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2013
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<pre style="margin: 0;">+<span id="LC2013" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;"> ********************************************************************************************/</span></span>
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2014
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<pre style="margin: 0;">+<span id="LC2014" class="line" lang="c"></span>
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2015
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<pre style="margin: 0;">+<span id="LC2015" class="line" lang="c"><span class="k" style="font-weight: 600;">typedef</span> <span class="k" style="font-weight: 600;">struct</span></span>
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2016
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<pre style="margin: 0;">+<span id="LC2016" class="line" lang="c"> <span class="p">{</span> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">first</span><span class="p">,</span> <span class="n" style="color: #333;">last</span><span class="p">,</span> <span class="n" style="color: #333;">next</span><span class="p">;</span></span>
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2017
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<pre style="margin: 0;">+<span id="LC2017" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">root</span><span class="p">,</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">pwd</span><span class="p">,</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">ppnt</span><span class="p">;</span></span>
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2018
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<pre style="margin: 0;">+<span id="LC2018" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">slice</span><span class="p">;</span></span>
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2019
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<pre style="margin: 0;">+<span id="LC2019" class="line" lang="c"> <span class="p">}</span> <span class="n" style="color: #333;">_Block_Looper</span><span class="p">;</span></span>
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2020
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<pre style="margin: 0;">+<span id="LC2020" class="line" lang="c"></span>
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2021
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<pre style="margin: 0;">+<span id="LC2021" class="line" lang="c"> <span class="c1" style="color: #998; font-style: italic;">// Advance the iterator e_parse to the next file, open it, and return the file pointer</span></span>
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2022
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<pre style="margin: 0;">+<span id="LC2022" class="line" lang="c"> <span class="c1" style="color: #998; font-style: italic;">// to it. Return NULL if at the end of the list of files.</span></span>
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2023
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<pre style="margin: 0;">+<span id="LC2023" class="line" lang="c"></span>
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<td class="diff-line-num new new_line" data-linenumber="2024" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2024
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<pre style="margin: 0;">+<span id="LC2024" class="line" lang="c"><span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="nf" style="color: #900; font-weight: 600;">Next_Block_Exists</span><span class="p">(</span><span class="n" style="color: #333;">Block_Looper</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">e_parse</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="2025" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2025
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<pre style="margin: 0;">+<span id="LC2025" class="line" lang="c"><span class="p">{</span> <span class="n" style="color: #333;">_Block_Looper</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">parse</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="n" style="color: #333;">_Block_Looper</span> <span class="o" style="font-weight: 600;">*</span><span class="p">)</span> <span class="n" style="color: #333;">e_parse</span><span class="p">;</span></span>
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2026
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<pre style="margin: 0;">+<span id="LC2026" class="line" lang="c"></span>
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<td class="diff-line-num new new_line" data-linenumber="2027" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2027
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<pre style="margin: 0;">+<span id="LC2027" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">disp</span><span class="p">;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="2028" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2028
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<pre style="margin: 0;">+<span id="LC2028" class="line" lang="c"> <span class="k" style="font-weight: 600;">struct</span> <span class="n" style="color: #333;">stat</span> <span class="n" style="color: #333;">sts</span><span class="p">;</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2029" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2029
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<pre style="margin: 0;">+<span id="LC2029" class="line" lang="c"></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="1992" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="2030" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2030
</td>
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<pre style="margin: 0;">+<span id="LC2030" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">parse</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">next</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">1</span> <span class="o" style="font-weight: 600;">></span> <span class="n" style="color: #333;">parse</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">last</span><span class="p">)</span></span>
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<td class="diff-line-num new old_line" data-linenumber="1992" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="2031" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2031
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<pre style="margin: 0;">+<span id="LC2031" class="line" lang="c"> <span class="k" style="font-weight: 600;">return</span> <span class="p">(</span><span class="mi" style="color: #099;">0</span><span class="p">);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="2032" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2032
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<pre style="margin: 0;">+<span id="LC2032" class="line" lang="c"></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="1992" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="2033" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2033
</td>
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<pre style="margin: 0;">+<span id="LC2033" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">parse</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">next</span> <span class="o" style="font-weight: 600;"><</span> <span class="mi" style="color: #099;">0</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="2034" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2034
</td>
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<pre style="margin: 0;">+<span id="LC2034" class="line" lang="c"> <span class="n" style="color: #333;">disp</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">parse</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">root</span><span class="p">;</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2035" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2035
</td>
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<pre style="margin: 0;">+<span id="LC2035" class="line" lang="c"> <span class="k" style="font-weight: 600;">else</span></span>
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<td class="diff-line-num new old_line" data-linenumber="1992" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="2036" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2036
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<pre style="margin: 0;">+<span id="LC2036" class="line" lang="c"> <span class="n" style="color: #333;">disp</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">Numbered_Suffix</span><span class="p">(</span><span class="n" style="color: #333;">parse</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">root</span><span class="p">,</span><span class="n" style="color: #333;">parse</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">next</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="n" style="color: #333;">parse</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">ppnt</span><span class="p">);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="2037" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2037
</td>
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<pre style="margin: 0;">+<span id="LC2037" class="line" lang="c"></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="1992" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="2038" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2038
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<pre style="margin: 0;">+<span id="LC2038" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">stat</span><span class="p">(</span><span class="n" style="color: #333;">Catenate</span><span class="p">(</span><span class="n" style="color: #333;">parse</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">pwd</span><span class="p">,</span><span class="s" style="color: #d14;">"/"</span><span class="p">,</span><span class="n" style="color: #333;">disp</span><span class="p">,</span><span class="s" style="color: #d14;">".las"</span><span class="p">),</span><span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">sts</span><span class="p">))</span></span>
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<td class="diff-line-num new new_line" data-linenumber="2039" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2039
</td>
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<pre style="margin: 0;">+<span id="LC2039" class="line" lang="c"> <span class="k" style="font-weight: 600;">return</span> <span class="p">(</span><span class="mi" style="color: #099;">0</span><span class="p">);</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2040" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2040
</td>
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<pre style="margin: 0;">+<span id="LC2040" class="line" lang="c"> <span class="k" style="font-weight: 600;">else</span></span>
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<td class="diff-line-num new new_line" data-linenumber="2041" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2041
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<pre style="margin: 0;">+<span id="LC2041" class="line" lang="c"> <span class="k" style="font-weight: 600;">return</span> <span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="2042" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2042
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<pre style="margin: 0;">+<span id="LC2042" class="line" lang="c"><span class="p">}</span></span>
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<td class="diff-line-num new new_line" data-linenumber="2043" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2043
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<pre style="margin: 0;">+<span id="LC2043" class="line" lang="c"></span>
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<td class="diff-line-num new new_line" data-linenumber="2044" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2044
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<pre style="margin: 0;">+<span id="LC2044" class="line" lang="c"></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2045" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2045
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<pre style="margin: 0;">+<span id="LC2045" class="line" lang="c"><span class="kt" style="color: #458; font-weight: 600;">FILE</span> <span class="o" style="font-weight: 600;">*</span><span class="nf" style="color: #900; font-weight: 600;">Next_Block_Arg</span><span class="p">(</span><span class="n" style="color: #333;">Block_Looper</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">e_parse</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="2046" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2046
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<pre style="margin: 0;">+<span id="LC2046" class="line" lang="c"><span class="p">{</span> <span class="n" style="color: #333;">_Block_Looper</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">parse</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="n" style="color: #333;">_Block_Looper</span> <span class="o" style="font-weight: 600;">*</span><span class="p">)</span> <span class="n" style="color: #333;">e_parse</span><span class="p">;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="2047" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2047
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<pre style="margin: 0;">+<span id="LC2047" class="line" lang="c"></span>
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<td class="diff-line-num new new_line" data-linenumber="2048" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2048
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<pre style="margin: 0;">+<span id="LC2048" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">disp</span><span class="p">;</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2049" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2049
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<pre style="margin: 0;">+<span id="LC2049" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">FILE</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">input</span><span class="p">;</span></span>
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<td class="diff-line-num new old_line" data-linenumber="1992" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="2050" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2050
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<pre style="margin: 0;">+<span id="LC2050" class="line" lang="c"></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="1992" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="2051" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2051
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<pre style="margin: 0;">+<span id="LC2051" class="line" lang="c"> <span class="n" style="color: #333;">parse</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">next</span> <span class="o" style="font-weight: 600;">+=</span> <span class="mi" style="color: #099;">1</span><span class="p">;</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2052" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2052
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<pre style="margin: 0;">+<span id="LC2052" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">parse</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">next</span> <span class="o" style="font-weight: 600;">></span> <span class="n" style="color: #333;">parse</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">last</span><span class="p">)</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2053" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2053
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<pre style="margin: 0;">+<span id="LC2053" class="line" lang="c"> <span class="k" style="font-weight: 600;">return</span> <span class="p">(</span><span class="nb" style="color: #0086b3;">NULL</span><span class="p">);</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2054" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2054
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<pre style="margin: 0;">+<span id="LC2054" class="line" lang="c"></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="1992" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="2055" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2055
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<pre style="margin: 0;">+<span id="LC2055" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">parse</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">next</span> <span class="o" style="font-weight: 600;"><</span> <span class="mi" style="color: #099;">0</span><span class="p">)</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="1992" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="2056" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2056
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<pre style="margin: 0;">+<span id="LC2056" class="line" lang="c"> <span class="n" style="color: #333;">disp</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">parse</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">root</span><span class="p">;</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="1992" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="2057" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2057
</td>
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<pre style="margin: 0;">+<span id="LC2057" class="line" lang="c"> <span class="k" style="font-weight: 600;">else</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="1992" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="2058" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2058
</td>
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<pre style="margin: 0;">+<span id="LC2058" class="line" lang="c"> <span class="n" style="color: #333;">disp</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">Numbered_Suffix</span><span class="p">(</span><span class="n" style="color: #333;">parse</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">root</span><span class="p">,</span><span class="n" style="color: #333;">parse</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">next</span><span class="p">,</span><span class="n" style="color: #333;">parse</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">ppnt</span><span class="p">);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="2059" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2059
</td>
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<pre style="margin: 0;">+<span id="LC2059" class="line" lang="c"></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="1992" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="2060" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2060
</td>
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<pre style="margin: 0;">+<span id="LC2060" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">((</span><span class="n" style="color: #333;">input</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">fopen</span><span class="p">(</span><span class="n" style="color: #333;">Catenate</span><span class="p">(</span><span class="n" style="color: #333;">parse</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">pwd</span><span class="p">,</span><span class="s" style="color: #d14;">"/"</span><span class="p">,</span><span class="n" style="color: #333;">disp</span><span class="p">,</span><span class="s" style="color: #d14;">".las"</span><span class="p">),</span><span class="s" style="color: #d14;">"r"</span><span class="p">))</span> <span class="o" style="font-weight: 600;">==</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">)</span></span>
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</td>
<td class="diff-line-num new new_line" data-linenumber="2061" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2061
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC2061" class="line" lang="c"> <span class="p">{</span> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">parse</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">last</span> <span class="o" style="font-weight: 600;">!=</span> <span class="n" style="color: #333;">INT_MAX</span><span class="p">)</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="1992" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="2062" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2062
</td>
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<pre style="margin: 0;">+<span id="LC2062" class="line" lang="c"> <span class="p">{</span> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stderr</span><span class="p">,</span><span class="s" style="color: #d14;">"%s: %s.las is not present</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">,</span><span class="n" style="color: #333;">Prog_Name</span><span class="p">,</span><span class="n" style="color: #333;">disp</span><span class="p">);</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2063" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2063
</td>
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<pre style="margin: 0;">+<span id="LC2063" class="line" lang="c"> <span class="n" style="color: #333;">exit</span> <span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">);</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="1992" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="2064" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2064
</td>
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<pre style="margin: 0;">+<span id="LC2064" class="line" lang="c"> <span class="p">}</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="1992" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="2065" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2065
</td>
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<pre style="margin: 0;">+<span id="LC2065" class="line" lang="c"> <span class="k" style="font-weight: 600;">return</span> <span class="p">(</span><span class="nb" style="color: #0086b3;">NULL</span><span class="p">);</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2066" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2066
</td>
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<pre style="margin: 0;">+<span id="LC2066" class="line" lang="c"> <span class="p">}</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="1992" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="2067" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2067
</td>
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<pre style="margin: 0;">+<span id="LC2067" class="line" lang="c"> <span class="k" style="font-weight: 600;">return</span> <span class="p">(</span><span class="n" style="color: #333;">input</span><span class="p">);</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2068" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2068
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<pre style="margin: 0;">+<span id="LC2068" class="line" lang="c"><span class="p">}</span></span>
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2069
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<pre style="margin: 0;">+<span id="LC2069" class="line" lang="c"></span>
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<td class="diff-line-num new new_line" data-linenumber="2070" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2070
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<pre style="margin: 0;">+<span id="LC2070" class="line" lang="c"> <span class="c1" style="color: #998; font-style: italic;">// Reset the iterator e_parse to the first file</span></span>
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<td class="diff-line-num new new_line" data-linenumber="2071" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2071
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<pre style="margin: 0;">+<span id="LC2071" class="line" lang="c"></span>
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<td class="diff-line-num new new_line" data-linenumber="2072" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2072
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<pre style="margin: 0;">+<span id="LC2072" class="line" lang="c"><span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="nf" style="color: #900; font-weight: 600;">Reset_Block_Arg</span><span class="p">(</span><span class="n" style="color: #333;">Block_Looper</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">e_parse</span><span class="p">)</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2073" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2073
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<pre style="margin: 0;">+<span id="LC2073" class="line" lang="c"><span class="p">{</span> <span class="n" style="color: #333;">_Block_Looper</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">parse</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="n" style="color: #333;">_Block_Looper</span> <span class="o" style="font-weight: 600;">*</span><span class="p">)</span> <span class="n" style="color: #333;">e_parse</span><span class="p">;</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2074" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2074
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<pre style="margin: 0;">+<span id="LC2074" class="line" lang="c"></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2075" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2075
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<pre style="margin: 0;">+<span id="LC2075" class="line" lang="c"> <span class="n" style="color: #333;">parse</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">next</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">parse</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">first</span> <span class="o" style="font-weight: 600;">-</span> <span class="mi" style="color: #099;">1</span><span class="p">;</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2076" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2076
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<pre style="margin: 0;">+<span id="LC2076" class="line" lang="c"><span class="p">}</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2077" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2077
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<pre style="margin: 0;">+<span id="LC2077" class="line" lang="c"></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2078" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2078
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<pre style="margin: 0;">+<span id="LC2078" class="line" lang="c"> <span class="c1" style="color: #998; font-style: italic;">// Return a pointer to the path for the current file</span></span>
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<td class="diff-line-num new new_line" data-linenumber="2079" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2079
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<pre style="margin: 0;">+<span id="LC2079" class="line" lang="c"></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2080" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2080
</td>
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<pre style="margin: 0;">+<span id="LC2080" class="line" lang="c"><span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="o" style="font-weight: 600;">*</span><span class="nf" style="color: #900; font-weight: 600;">Block_Arg_Path</span><span class="p">(</span><span class="n" style="color: #333;">Block_Looper</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">e_parse</span><span class="p">)</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2081" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2081
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<pre style="margin: 0;">+<span id="LC2081" class="line" lang="c"><span class="p">{</span> <span class="n" style="color: #333;">_Block_Looper</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">parse</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="n" style="color: #333;">_Block_Looper</span> <span class="o" style="font-weight: 600;">*</span><span class="p">)</span> <span class="n" style="color: #333;">e_parse</span><span class="p">;</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2082" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2082
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<pre style="margin: 0;">+<span id="LC2082" class="line" lang="c"></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2083" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2083
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<pre style="margin: 0;">+<span id="LC2083" class="line" lang="c"> <span class="k" style="font-weight: 600;">return</span> <span class="p">(</span><span class="n" style="color: #333;">parse</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">pwd</span><span class="p">);</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2084" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2084
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<pre style="margin: 0;">+<span id="LC2084" class="line" lang="c"><span class="p">}</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2085" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2085
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<pre style="margin: 0;">+<span id="LC2085" class="line" lang="c"></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2086" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2086
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<pre style="margin: 0;">+<span id="LC2086" class="line" lang="c"> <span class="c1" style="color: #998; font-style: italic;">// Return a pointer to the root name for the current file</span></span>
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<td class="diff-line-num new new_line" data-linenumber="2087" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2087
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<pre style="margin: 0;">+<span id="LC2087" class="line" lang="c"></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2088" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2088
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<pre style="margin: 0;">+<span id="LC2088" class="line" lang="c"><span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="o" style="font-weight: 600;">*</span><span class="nf" style="color: #900; font-weight: 600;">Block_Arg_Root</span><span class="p">(</span><span class="n" style="color: #333;">Block_Looper</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">e_parse</span><span class="p">)</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2089" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2089
</td>
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<pre style="margin: 0;">+<span id="LC2089" class="line" lang="c"><span class="p">{</span> <span class="n" style="color: #333;">_Block_Looper</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">parse</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="n" style="color: #333;">_Block_Looper</span> <span class="o" style="font-weight: 600;">*</span><span class="p">)</span> <span class="n" style="color: #333;">e_parse</span><span class="p">;</span></span>
</pre>
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2090
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<pre style="margin: 0;">+<span id="LC2090" class="line" lang="c"></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2091" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2091
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<pre style="margin: 0;">+<span id="LC2091" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">parse</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">next</span> <span class="o" style="font-weight: 600;"><</span> <span class="mi" style="color: #099;">0</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="2092" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2092
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<pre style="margin: 0;">+<span id="LC2092" class="line" lang="c"> <span class="k" style="font-weight: 600;">return</span> <span class="p">(</span><span class="n" style="color: #333;">parse</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">root</span><span class="p">);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="2093" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2093
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<pre style="margin: 0;">+<span id="LC2093" class="line" lang="c"> <span class="k" style="font-weight: 600;">else</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2094" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2094
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<pre style="margin: 0;">+<span id="LC2094" class="line" lang="c"> <span class="k" style="font-weight: 600;">return</span> <span class="p">(</span><span class="n" style="color: #333;">Numbered_Suffix</span><span class="p">(</span><span class="n" style="color: #333;">parse</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">root</span><span class="p">,</span><span class="n" style="color: #333;">parse</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">next</span><span class="p">,</span><span class="n" style="color: #333;">parse</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">ppnt</span><span class="p">));</span></span>
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<td class="diff-line-num new new_line" data-linenumber="2095" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2095
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<pre style="margin: 0;">+<span id="LC2095" class="line" lang="c"><span class="p">}</span></span>
</pre>
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2096
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<pre style="margin: 0;">+<span id="LC2096" class="line" lang="c"></span>
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<td class="diff-line-num new new_line" data-linenumber="2097" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2097
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<pre style="margin: 0;">+<span id="LC2097" class="line" lang="c"> <span class="c1" style="color: #998; font-style: italic;">// Free the iterator</span></span>
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<td class="diff-line-num new new_line" data-linenumber="2098" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2098
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<pre style="margin: 0;">+<span id="LC2098" class="line" lang="c"></span>
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<td class="diff-line-num new new_line" data-linenumber="2099" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2099
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<pre style="margin: 0;">+<span id="LC2099" class="line" lang="c"><span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="nf" style="color: #900; font-weight: 600;">Free_Block_Arg</span><span class="p">(</span><span class="n" style="color: #333;">Block_Looper</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">e_parse</span><span class="p">)</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2100" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2100
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<pre style="margin: 0;">+<span id="LC2100" class="line" lang="c"><span class="p">{</span> <span class="n" style="color: #333;">_Block_Looper</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">parse</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="n" style="color: #333;">_Block_Looper</span> <span class="o" style="font-weight: 600;">*</span><span class="p">)</span> <span class="n" style="color: #333;">e_parse</span><span class="p">;</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2101" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2101
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<pre style="margin: 0;">+<span id="LC2101" class="line" lang="c"></span>
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<td class="diff-line-num new new_line" data-linenumber="2102" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2102
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<pre style="margin: 0;">+<span id="LC2102" class="line" lang="c"> <span class="n" style="color: #333;">free</span><span class="p">(</span><span class="n" style="color: #333;">parse</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">root</span><span class="p">);</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2103" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2103
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<pre style="margin: 0;">+<span id="LC2103" class="line" lang="c"> <span class="n" style="color: #333;">free</span><span class="p">(</span><span class="n" style="color: #333;">parse</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">pwd</span><span class="p">);</span></span>
</pre>
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</td>
<td class="diff-line-num new new_line" data-linenumber="2104" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2104
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<pre style="margin: 0;">+<span id="LC2104" class="line" lang="c"> <span class="n" style="color: #333;">free</span><span class="p">(</span><span class="n" style="color: #333;">parse</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">slice</span><span class="p">);</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2105" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2105
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<pre style="margin: 0;">+<span id="LC2105" class="line" lang="c"> <span class="n" style="color: #333;">free</span><span class="p">(</span><span class="n" style="color: #333;">parse</span><span class="p">);</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2106" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2106
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<pre style="margin: 0;">+<span id="LC2106" class="line" lang="c"><span class="p">}</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2107" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2107
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<pre style="margin: 0;">+<span id="LC2107" class="line" lang="c"></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2108" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2108
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<pre style="margin: 0;">+<span id="LC2108" class="line" lang="c"><span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="o" style="font-weight: 600;">*</span><span class="nf" style="color: #900; font-weight: 600;">Next_Block_Slice</span><span class="p">(</span><span class="n" style="color: #333;">Block_Looper</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">e_parse</span><span class="p">,</span> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">slice</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="2109" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2109
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<pre style="margin: 0;">+<span id="LC2109" class="line" lang="c"><span class="p">{</span> <span class="n" style="color: #333;">_Block_Looper</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">parse</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="n" style="color: #333;">_Block_Looper</span> <span class="o" style="font-weight: 600;">*</span><span class="p">)</span> <span class="n" style="color: #333;">e_parse</span><span class="p">;</span></span>
</pre>
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2110
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<pre style="margin: 0;">+<span id="LC2110" class="line" lang="c"></span>
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<td class="diff-line-num new new_line" data-linenumber="2111" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2111
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<pre style="margin: 0;">+<span id="LC2111" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">parse</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">slice</span> <span class="o" style="font-weight: 600;">==</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="2112" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2112
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<pre style="margin: 0;">+<span id="LC2112" class="line" lang="c"> <span class="p">{</span> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">size</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strlen</span><span class="p">(</span><span class="n" style="color: #333;">parse</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">pwd</span><span class="p">)</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">strlen</span><span class="p">(</span><span class="n" style="color: #333;">Block_Arg_Root</span><span class="p">(</span><span class="n" style="color: #333;">parse</span><span class="p">))</span> <span class="o" style="font-weight: 600;">+</span> <span class="mi" style="color: #099;">30</span><span class="p">;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="2113" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2113
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<pre style="margin: 0;">+<span id="LC2113" class="line" lang="c"> <span class="n" style="color: #333;">parse</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">slice</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="o" style="font-weight: 600;">*</span><span class="p">)</span> <span class="n" style="color: #333;">Malloc</span><span class="p">(</span><span class="n" style="color: #333;">size</span><span class="p">,</span><span class="s" style="color: #d14;">"Block argument slice"</span><span class="p">);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="2114" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2114
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<pre style="margin: 0;">+<span id="LC2114" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">parse</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">slice</span> <span class="o" style="font-weight: 600;">==</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="2115" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2115
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<pre style="margin: 0;">+<span id="LC2115" class="line" lang="c"> <span class="n" style="color: #333;">exit</span> <span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">);</span></span>
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2116
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<pre style="margin: 0;">+<span id="LC2116" class="line" lang="c"> <span class="p">}</span></span>
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2117
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<pre style="margin: 0;">+<span id="LC2117" class="line" lang="c"></span>
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<td class="diff-line-num new new_line" data-linenumber="2118" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2118
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<pre style="margin: 0;">+<span id="LC2118" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">parse</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">first</span> <span class="o" style="font-weight: 600;"><</span> <span class="mi" style="color: #099;">0</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="2119" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2119
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<pre style="margin: 0;">+<span id="LC2119" class="line" lang="c"> <span class="n" style="color: #333;">sprintf</span><span class="p">(</span><span class="n" style="color: #333;">parse</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">slice</span><span class="p">,</span><span class="s" style="color: #d14;">"%s/%s"</span><span class="p">,</span><span class="n" style="color: #333;">parse</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">pwd</span><span class="p">,</span><span class="n" style="color: #333;">parse</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">root</span><span class="p">);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="2120" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2120
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<pre style="margin: 0;">+<span id="LC2120" class="line" lang="c"> <span class="k" style="font-weight: 600;">else</span></span>
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<td class="diff-line-num new new_line" data-linenumber="2121" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2121
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<pre style="margin: 0;">+<span id="LC2121" class="line" lang="c"> <span class="n" style="color: #333;">sprintf</span><span class="p">(</span><span class="n" style="color: #333;">parse</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">slice</span><span class="p">,</span><span class="s" style="color: #d14;">"%s/%s%c%d-%d%s"</span><span class="p">,</span><span class="n" style="color: #333;">parse</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">pwd</span><span class="p">,</span><span class="n" style="color: #333;">parse</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">root</span><span class="p">,</span><span class="n" style="color: #333;">BLOCK_SYMBOL</span><span class="p">,</span><span class="n" style="color: #333;">parse</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">next</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">1</span><span class="p">,</span></span>
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<td class="diff-line-num new new_line" data-linenumber="2122" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2122
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<pre style="margin: 0;">+<span id="LC2122" class="line" lang="c"> <span class="n" style="color: #333;">parse</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">next</span><span class="o" style="font-weight: 600;">+</span><span class="n" style="color: #333;">slice</span><span class="p">,</span><span class="n" style="color: #333;">parse</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">ppnt</span><span class="p">);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="2123" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2123
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<pre style="margin: 0;">+<span id="LC2123" class="line" lang="c"> <span class="n" style="color: #333;">parse</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">next</span> <span class="o" style="font-weight: 600;">+=</span> <span class="n" style="color: #333;">slice</span><span class="p">;</span></span>
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2124
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<pre style="margin: 0;">+<span id="LC2124" class="line" lang="c"> <span class="k" style="font-weight: 600;">return</span> <span class="p">(</span><span class="n" style="color: #333;">parse</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">slice</span><span class="p">);</span></span>
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2125
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<pre style="margin: 0;">+<span id="LC2125" class="line" lang="c"><span class="p">}</span></span>
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2126
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<pre style="margin: 0;">+<span id="LC2126" class="line" lang="c"></span>
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2127
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<pre style="margin: 0;">+<span id="LC2127" class="line" lang="c"> <span class="c1" style="color: #998; font-style: italic;">// Parse the command line argument and return an iterator to move through the</span></span>
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2128
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<pre style="margin: 0;">+<span id="LC2128" class="line" lang="c"> <span class="c1" style="color: #998; font-style: italic;">// file names, setting it up to report the first file.</span></span>
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2129
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<pre style="margin: 0;">+<span id="LC2129" class="line" lang="c"></span>
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2130
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<pre style="margin: 0;">+<span id="LC2130" class="line" lang="c"><span class="n" style="color: #333;">Block_Looper</span> <span class="o" style="font-weight: 600;">*</span><span class="nf" style="color: #900; font-weight: 600;">Parse_Block_Arg</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">arg</span><span class="p">)</span></span>
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2131
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<pre style="margin: 0;">+<span id="LC2131" class="line" lang="c"><span class="p">{</span> <span class="n" style="color: #333;">_Block_Looper</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">parse</span><span class="p">;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="2132" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2132
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<pre style="margin: 0;">+<span id="LC2132" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">pwd</span><span class="p">,</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">root</span><span class="p">;</span></span>
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<td class="diff-line-num new old_line" data-linenumber="1992" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="2133" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2133
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<pre style="margin: 0;">+<span id="LC2133" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">ppnt</span><span class="p">,</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">cpnt</span><span class="p">;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="2134" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2134
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<pre style="margin: 0;">+<span id="LC2134" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">first</span><span class="p">,</span> <span class="n" style="color: #333;">last</span><span class="p">;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="2135" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2135
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<pre style="margin: 0;">+<span id="LC2135" class="line" lang="c"></span>
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<td class="diff-line-num new old_line" data-linenumber="1992" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="2136" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2136
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<pre style="margin: 0;">+<span id="LC2136" class="line" lang="c"> <span class="n" style="color: #333;">parse</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="n" style="color: #333;">_Block_Looper</span> <span class="o" style="font-weight: 600;">*</span><span class="p">)</span> <span class="n" style="color: #333;">Malloc</span><span class="p">(</span><span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="n" style="color: #333;">_Block_Looper</span><span class="p">),</span><span class="s" style="color: #d14;">"Allocating parse node"</span><span class="p">);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="2137" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2137
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<pre style="margin: 0;">+<span id="LC2137" class="line" lang="c"> <span class="n" style="color: #333;">pwd</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">PathTo</span><span class="p">(</span><span class="n" style="color: #333;">arg</span><span class="p">);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="2138" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2138
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<pre style="margin: 0;">+<span id="LC2138" class="line" lang="c"> <span class="n" style="color: #333;">root</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">Root</span><span class="p">(</span><span class="n" style="color: #333;">arg</span><span class="p">,</span><span class="s" style="color: #d14;">".las"</span><span class="p">);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="2139" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2139
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<pre style="margin: 0;">+<span id="LC2139" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">parse</span> <span class="o" style="font-weight: 600;">==</span> <span class="nb" style="color: #0086b3;">NULL</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">pwd</span> <span class="o" style="font-weight: 600;">==</span> <span class="nb" style="color: #0086b3;">NULL</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">root</span> <span class="o" style="font-weight: 600;">==</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="2140" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2140
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<pre style="margin: 0;">+<span id="LC2140" class="line" lang="c"> <span class="n" style="color: #333;">exit</span> <span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="2141" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2141
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<pre style="margin: 0;">+<span id="LC2141" class="line" lang="c"></span>
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<td class="diff-line-num new new_line" data-linenumber="2142" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2142
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<pre style="margin: 0;">+<span id="LC2142" class="line" lang="c"> <span class="n" style="color: #333;">ppnt</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">index</span><span class="p">(</span><span class="n" style="color: #333;">root</span><span class="p">,</span><span class="n" style="color: #333;">BLOCK_SYMBOL</span><span class="p">);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="2143" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2143
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<pre style="margin: 0;">+<span id="LC2143" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">ppnt</span> <span class="o" style="font-weight: 600;">==</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="2144" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2144
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<pre style="margin: 0;">+<span id="LC2144" class="line" lang="c"> <span class="n" style="color: #333;">first</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">last</span> <span class="o" style="font-weight: 600;">=</span> <span class="o" style="font-weight: 600;">-</span><span class="mi" style="color: #099;">1</span><span class="p">;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="2145" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2145
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<pre style="margin: 0;">+<span id="LC2145" class="line" lang="c"> <span class="k" style="font-weight: 600;">else</span></span>
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<td class="diff-line-num new new_line" data-linenumber="2146" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2146
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<pre style="margin: 0;">+<span id="LC2146" class="line" lang="c"> <span class="p">{</span> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">index</span><span class="p">(</span><span class="n" style="color: #333;">ppnt</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="n" style="color: #333;">BLOCK_SYMBOL</span><span class="p">)</span> <span class="o" style="font-weight: 600;">!=</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="2147" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2147
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<pre style="margin: 0;">+<span id="LC2147" class="line" lang="c"> <span class="p">{</span> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stderr</span><span class="p">,</span><span class="s" style="color: #d14;">"%s: Two or more occurences of %c-sign in source name '%s'</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">,</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2148" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2148
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<pre style="margin: 0;">+<span id="LC2148" class="line" lang="c"> <span class="n" style="color: #333;">Prog_Name</span><span class="p">,</span><span class="n" style="color: #333;">BLOCK_SYMBOL</span><span class="p">,</span><span class="n" style="color: #333;">root</span><span class="p">);</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2149" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2149
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<pre style="margin: 0;">+<span id="LC2149" class="line" lang="c"> <span class="n" style="color: #333;">exit</span> <span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">);</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2150" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2150
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<pre style="margin: 0;">+<span id="LC2150" class="line" lang="c"> <span class="p">}</span></span>
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2151
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<pre style="margin: 0;">+<span id="LC2151" class="line" lang="c"> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">ppnt</span><span class="o" style="font-weight: 600;">++</span> <span class="o" style="font-weight: 600;">=</span> <span class="sc" style="color: #d14;">'\0'</span><span class="p">;</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2152" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2152
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<pre style="margin: 0;">+<span id="LC2152" class="line" lang="c"> <span class="n" style="color: #333;">first</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strtol</span><span class="p">(</span><span class="n" style="color: #333;">ppnt</span><span class="p">,</span><span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">cpnt</span><span class="p">,</span><span class="mi" style="color: #099;">10</span><span class="p">);</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2153" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2153
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<pre style="margin: 0;">+<span id="LC2153" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">cpnt</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">ppnt</span><span class="p">)</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2154" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2154
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<pre style="margin: 0;">+<span id="LC2154" class="line" lang="c"> <span class="p">{</span> <span class="n" style="color: #333;">first</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">1</span><span class="p">;</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2155" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2155
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<pre style="margin: 0;">+<span id="LC2155" class="line" lang="c"> <span class="n" style="color: #333;">last</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">INT_MAX</span><span class="p">;</span></span>
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2156
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<pre style="margin: 0;">+<span id="LC2156" class="line" lang="c"> <span class="p">}</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2157" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2157
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<pre style="margin: 0;">+<span id="LC2157" class="line" lang="c"> <span class="k" style="font-weight: 600;">else</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2158" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2158
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<pre style="margin: 0;">+<span id="LC2158" class="line" lang="c"> <span class="p">{</span> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">first</span> <span class="o" style="font-weight: 600;"><</span> <span class="mi" style="color: #099;">0</span><span class="p">)</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="1992" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="2159" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2159
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<pre style="margin: 0;">+<span id="LC2159" class="line" lang="c"> <span class="p">{</span> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stderr</span><span class="p">,</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2160" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2160
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<pre style="margin: 0;">+<span id="LC2160" class="line" lang="c"> <span class="s" style="color: #d14;">"%s: Integer following %c-sigan is less than 0 in source name '%s'</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">,</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="1992" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="2161" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2161
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<pre style="margin: 0;">+<span id="LC2161" class="line" lang="c"> <span class="n" style="color: #333;">Prog_Name</span><span class="p">,</span><span class="n" style="color: #333;">BLOCK_SYMBOL</span><span class="p">,</span><span class="n" style="color: #333;">root</span><span class="p">);</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2162" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2162
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<pre style="margin: 0;">+<span id="LC2162" class="line" lang="c"> <span class="n" style="color: #333;">exit</span> <span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="2163" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2163
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<pre style="margin: 0;">+<span id="LC2163" class="line" lang="c"> <span class="p">}</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2164" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2164
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<pre style="margin: 0;">+<span id="LC2164" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">cpnt</span> <span class="o" style="font-weight: 600;">==</span> <span class="sc" style="color: #d14;">'-'</span><span class="p">)</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2165" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2165
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<pre style="margin: 0;">+<span id="LC2165" class="line" lang="c"> <span class="p">{</span> <span class="n" style="color: #333;">ppnt</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">cpnt</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">1</span><span class="p">;</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2166" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2166
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<pre style="margin: 0;">+<span id="LC2166" class="line" lang="c"> <span class="n" style="color: #333;">last</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">strtol</span><span class="p">(</span><span class="n" style="color: #333;">ppnt</span><span class="p">,</span><span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">cpnt</span><span class="p">,</span><span class="mi" style="color: #099;">10</span><span class="p">);</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2167" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2167
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<pre style="margin: 0;">+<span id="LC2167" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">cpnt</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">ppnt</span><span class="p">)</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2168" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2168
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<pre style="margin: 0;">+<span id="LC2168" class="line" lang="c"> <span class="p">{</span> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stderr</span><span class="p">,</span><span class="s" style="color: #d14;">"%s: Second integer must follow - in source name '%s'</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">,</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2169" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2169
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<pre style="margin: 0;">+<span id="LC2169" class="line" lang="c"> <span class="n" style="color: #333;">Prog_Name</span><span class="p">,</span><span class="n" style="color: #333;">root</span><span class="p">);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="2170" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2170
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<pre style="margin: 0;">+<span id="LC2170" class="line" lang="c"> <span class="n" style="color: #333;">exit</span> <span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">);</span></span>
</pre>
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2171
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<pre style="margin: 0;">+<span id="LC2171" class="line" lang="c"> <span class="p">}</span></span>
</pre>
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2172
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<pre style="margin: 0;">+<span id="LC2172" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">last</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">first</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="2173" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2173
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<pre style="margin: 0;">+<span id="LC2173" class="line" lang="c"> <span class="p">{</span> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stderr</span><span class="p">,</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2174" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2174
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<pre style="margin: 0;">+<span id="LC2174" class="line" lang="c"> <span class="s" style="color: #d14;">"%s: 2nd integer is less than 1st integer in source name '%s'</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">,</span></span>
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<td class="diff-line-num new new_line" data-linenumber="2175" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2175
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<pre style="margin: 0;">+<span id="LC2175" class="line" lang="c"> <span class="n" style="color: #333;">Prog_Name</span><span class="p">,</span><span class="n" style="color: #333;">root</span><span class="p">);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="2176" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2176
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<pre style="margin: 0;">+<span id="LC2176" class="line" lang="c"> <span class="n" style="color: #333;">exit</span> <span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="2177" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2177
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<pre style="margin: 0;">+<span id="LC2177" class="line" lang="c"> <span class="p">}</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="1992" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="2178" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2178
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<pre style="margin: 0;">+<span id="LC2178" class="line" lang="c"> <span class="n" style="color: #333;">ppnt</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">cpnt</span><span class="p">;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="2179" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2179
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<pre style="margin: 0;">+<span id="LC2179" class="line" lang="c"> <span class="p">}</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2180" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2180
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<pre style="margin: 0;">+<span id="LC2180" class="line" lang="c"> <span class="k" style="font-weight: 600;">else</span></span>
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<td class="diff-line-num new new_line" data-linenumber="2181" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2181
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<pre style="margin: 0;">+<span id="LC2181" class="line" lang="c"> <span class="p">{</span> <span class="n" style="color: #333;">last</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">INT_MAX</span><span class="p">;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="2182" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2182
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<pre style="margin: 0;">+<span id="LC2182" class="line" lang="c"> <span class="n" style="color: #333;">ppnt</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">cpnt</span><span class="p">;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="2183" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2183
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<pre style="margin: 0;">+<span id="LC2183" class="line" lang="c"> <span class="p">}</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2184" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2184
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<pre style="margin: 0;">+<span id="LC2184" class="line" lang="c"> <span class="p">}</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2185" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2185
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<pre style="margin: 0;">+<span id="LC2185" class="line" lang="c"> <span class="p">}</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="1992" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="2186" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2186
</td>
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<pre style="margin: 0;">+<span id="LC2186" class="line" lang="c"></span>
</pre>
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</td>
<td class="diff-line-num new new_line" data-linenumber="2187" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2187
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<pre style="margin: 0;">+<span id="LC2187" class="line" lang="c"> <span class="n" style="color: #333;">parse</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">pwd</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">pwd</span><span class="p">;</span></span>
</pre>
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</td>
<td class="diff-line-num new new_line" data-linenumber="2188" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2188
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<pre style="margin: 0;">+<span id="LC2188" class="line" lang="c"> <span class="n" style="color: #333;">parse</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">root</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">root</span><span class="p">;</span></span>
</pre>
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</td>
<td class="diff-line-num new new_line" data-linenumber="2189" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2189
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<pre style="margin: 0;">+<span id="LC2189" class="line" lang="c"> <span class="n" style="color: #333;">parse</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">ppnt</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">ppnt</span><span class="p">;</span></span>
</pre>
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</td>
<td class="diff-line-num new new_line" data-linenumber="2190" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2190
</td>
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<pre style="margin: 0;">+<span id="LC2190" class="line" lang="c"> <span class="n" style="color: #333;">parse</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">first</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">first</span><span class="p">;</span></span>
</pre>
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</td>
<td class="diff-line-num new new_line" data-linenumber="2191" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2191
</td>
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<pre style="margin: 0;">+<span id="LC2191" class="line" lang="c"> <span class="n" style="color: #333;">parse</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">last</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">last</span><span class="p">;</span></span>
</pre>
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</td>
<td class="diff-line-num new new_line" data-linenumber="2192" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2192
</td>
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<pre style="margin: 0;">+<span id="LC2192" class="line" lang="c"> <span class="n" style="color: #333;">parse</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">next</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">first</span><span class="o" style="font-weight: 600;">-</span><span class="mi" style="color: #099;">1</span><span class="p">;</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2193" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2193
</td>
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<pre style="margin: 0;">+<span id="LC2193" class="line" lang="c"> <span class="n" style="color: #333;">parse</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">slice</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">;</span></span>
</pre>
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2194
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<pre style="margin: 0;">+<span id="LC2194" class="line" lang="c"> <span class="k" style="font-weight: 600;">return</span> <span class="p">((</span><span class="n" style="color: #333;">Block_Looper</span> <span class="o" style="font-weight: 600;">*</span><span class="p">)</span> <span class="n" style="color: #333;">parse</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC2195" class="line" lang="c"><span class="p">}</span></span></pre>
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<a href="https://salsa.debian.org/med-team/dazzdb/commit/d9350062a729e5294b2ca4cd106570d00dfe4719#cb13c080264e286f3eb9724d1d01e9d79f06a51f"><strong>DB.h</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -59,6 +59,8 @@ typedef signed long long int64;</td>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="c"><span class="k" style="font-weight: 600;">typedef</span> <span class="kt" style="color: #458; font-weight: 600;">float</span> <span class="n" style="color: #333;">float32</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="c"><span class="k" style="font-weight: 600;">typedef</span> <span class="kt" style="color: #458; font-weight: 600;">double</span> <span class="n" style="color: #333;">float64</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="c"></span>
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#define LAST_READ_SYMBOL '$'</span></span>
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#define BLOCK_SYMBOL '@'</span></span>
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="c"></span>
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;">/*******************************************************************************************</span></span>
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<pre style="margin: 0;"> <span id="LC66" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;"> *</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -215,12 +217,11 @@ int Count_Args(char *arg);</td>
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<pre style="margin: 0;"> <span id="LC217" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;"> SYSTEM_READ_ERROR \</span></span>
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<pre style="margin: 0;"> <span id="LC218" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;"> }</span></span>
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<pre style="margin: 0;"> <span id="LC219" class="line" lang="c"></span>
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<pre style="margin: 0;">-<span id="LC218" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#define FTELLO(file) \</span></span>
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<pre style="margin: 0;">-<span id="LC219" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;"> ( { int x = ftello(file); \</span></span>
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<pre style="margin: 0;">-<span id="LC220" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;"> if (x < 0) \</span></span>
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<pre style="margin: 0;">-<span id="LC221" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;"> SYSTEM_READ_ERROR \</span></span>
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<pre style="margin: 0;">-<span id="LC222" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;"> ; x; \</span></span>
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<pre style="margin: 0;">-<span id="LC223" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;"> } )</span></span>
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<pre style="margin: 0;">+<span id="LC220" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#define FTELLO(val,file) \</span></span>
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<pre style="margin: 0;">+<span id="LC221" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;"> { val = ftello(file); \</span></span>
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<pre style="margin: 0;">+<span id="LC222" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;"> if (val < 0) \</span></span>
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<pre style="margin: 0;">+<span id="LC223" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;"> SYSTEM_READ_ERROR \</span></span>
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<pre style="margin: 0;">+<span id="LC224" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;"> }</span></span>
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<pre style="margin: 0;"> <span id="LC226" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;">/*******************************************************************************************</span></span>
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<pre style="margin: 0;"> <span id="LC227" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;"> *</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -567,4 +568,25 @@ int Read_All_Sequences(DAZZ_DB *db, int ascii);</td>
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<pre style="margin: 0;"> <span id="LC568" class="line" lang="c"></span>
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<pre style="margin: 0;"> <span id="LC569" class="line" lang="c"><span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">List_DB_Files</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">path</span><span class="p">,</span> <span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="n" style="color: #333;">actor</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">path</span><span class="p">,</span> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">extension</span><span class="p">));</span></span>
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<pre style="margin: 0;"> <span id="LC570" class="line" lang="c"></span>
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<pre style="margin: 0;">+<span id="LC571" class="line" lang="c"> <span class="c1" style="color: #998; font-style: italic;">// Take a command line argument and interpret the '@' block number ranges.</span></span>
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<pre style="margin: 0;">+<span id="LC572" class="line" lang="c"> <span class="c1" style="color: #998; font-style: italic;">// Parse_Block_Arg produces a Block_Looper iterator object that can then</span></span>
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<pre style="margin: 0;">+<span id="LC573" class="line" lang="c"> <span class="c1" style="color: #998; font-style: italic;">// be invoked multiple times to iterate through all the files implied by</span></span>
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<pre style="margin: 0;">+<span id="LC574" class="line" lang="c"> <span class="c1" style="color: #998; font-style: italic;">// the @ pattern/range. Next_Block_Slice returns a string encoing the next</span></span>
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<pre style="margin: 0;">+<span id="LC575" class="line" lang="c"> <span class="c1" style="color: #998; font-style: italic;">// slice files represented by an @-notation, and advances the iterator by</span></span>
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<pre style="margin: 0;">+<span id="LC576" class="line" lang="c"> <span class="c1" style="color: #998; font-style: italic;">// that many files.</span></span>
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<pre style="margin: 0;">+<span id="LC577" class="line" lang="c"></span>
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<pre style="margin: 0;">+<span id="LC578" class="line" lang="c"><span class="k" style="font-weight: 600;">typedef</span> <span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="n" style="color: #333;">Block_Looper</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC580" class="line" lang="c"><span class="n" style="color: #333;">Block_Looper</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">Parse_Block_Arg</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">arg</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC582" class="line" lang="c"><span class="kt" style="color: #458; font-weight: 600;">FILE</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">Next_Block_Arg</span><span class="p">(</span><span class="n" style="color: #333;">Block_Looper</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">e_parse</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC583" class="line" lang="c"><span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">Next_Block_Exists</span><span class="p">(</span><span class="n" style="color: #333;">Block_Looper</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">e_parse</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC585" class="line" lang="c"><span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">Next_Block_Slice</span><span class="p">(</span><span class="n" style="color: #333;">Block_Looper</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">e_parse</span><span class="p">,</span><span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">slice</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC586" class="line" lang="c"></span>
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587
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<pre style="margin: 0;">+<span id="LC587" class="line" lang="c"><span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="n" style="color: #333;">Reset_Block_Arg</span><span class="p">(</span><span class="n" style="color: #333;">Block_Looper</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">e_parse</span><span class="p">);</span> <span class="c1" style="color: #998; font-style: italic;">// Reset iterator to first file</span></span>
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588
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<pre style="margin: 0;">+<span id="LC588" class="line" lang="c"><span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">Block_Arg_Path</span><span class="p">(</span><span class="n" style="color: #333;">Block_Looper</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">e_parse</span><span class="p">);</span> <span class="c1" style="color: #998; font-style: italic;">// Path of current file</span></span>
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589
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<pre style="margin: 0;">+<span id="LC589" class="line" lang="c"><span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">Block_Arg_Root</span><span class="p">(</span><span class="n" style="color: #333;">Block_Looper</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">e_parse</span><span class="p">);</span> <span class="c1" style="color: #998; font-style: italic;">// Root name of current file</span></span>
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590
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<pre style="margin: 0;">+<span id="LC590" class="line" lang="c"><span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="n" style="color: #333;">Free_Block_Arg</span><span class="p">(</span><span class="n" style="color: #333;">Block_Looper</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">e_parse</span><span class="p">);</span> <span class="c1" style="color: #998; font-style: italic;">// Free the iterator</span></span>
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591
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<pre style="margin: 0;">+<span id="LC591" class="line" lang="c"></span>
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592
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<pre style="margin: 0;"> <span id="LC592" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#endif // _DAZZ_DB</span></span></pre>
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<a href="https://salsa.debian.org/med-team/dazzdb/commit/d9350062a729e5294b2ca4cd106570d00dfe4719#ed26045d610bc9948c14331e420a879741ab23b9"><strong>DBdump.c</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -94,6 +94,7 @@ static int prof_map[41] =</td>
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<pre style="margin: 0;"> <span id="LC94" class="line" lang="c"><span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="nf" style="color: #900; font-weight: 600;">main</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">argc</span><span class="p">,</span> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">argv</span><span class="p">[])</span></span>
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<pre style="margin: 0;"> <span id="LC95" class="line" lang="c"><span class="p">{</span> <span class="n" style="color: #333;">DAZZ_DB</span> <span class="n" style="color: #333;">_db</span><span class="p">,</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">db</span> <span class="o" style="font-weight: 600;">=</span> <span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">_db</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC96" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">Quiva_DB</span><span class="p">,</span> <span class="n" style="color: #333;">Arrow_DB</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC97" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">FirstRead</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC98" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">FILE</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">hdrs</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">;</span></span>
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98
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<pre style="margin: 0;"> <span id="LC99" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">hdrs_name</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC100" class="line" lang="c"> <span class="n" style="color: #333;">int64</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">qv_idx</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">;</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -377,7 +378,10 @@ int main(int argc, char *argv[])</td>
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377
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<pre style="margin: 0;"> <span id="LC378" class="line" lang="c"> <span class="k" style="font-weight: 600;">else</span> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">status</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">1</span><span class="p">)</span></span>
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378
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<pre style="margin: 0;"> <span id="LC379" class="line" lang="c"> <span class="n" style="color: #333;">MTRACK</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">Load_Track</span><span class="p">(</span><span class="n" style="color: #333;">db</span><span class="p">,</span><span class="n" style="color: #333;">MASK</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">]);</span></span>
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379
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<pre style="margin: 0;"> <span id="LC380" class="line" lang="c"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC381" class="line" lang="c"> <span class="n" style="color: #333;">FirstRead</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">db</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">tfirst</span><span class="p">;</span></span>
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380
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382
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<pre style="margin: 0;"> <span id="LC382" class="line" lang="c"> <span class="p">}</span></span>
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383
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<pre style="margin: 0;">+<span id="LC383" class="line" lang="c"> <span class="k" style="font-weight: 600;">else</span></span>
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<td class="diff-line-num new new_line" data-linenumber="384" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
384
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<pre style="margin: 0;">+<span id="LC384" class="line" lang="c"> <span class="n" style="color: #333;">FirstRead</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">db</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">ufirst</span><span class="p">;</span></span>
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381
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385
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<pre style="margin: 0;"> <span id="LC385" class="line" lang="c"></span>
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382
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386
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<pre style="margin: 0;"> <span id="LC386" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">DOIQV</span><span class="p">)</span></span>
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383
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387
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<pre style="margin: 0;"> <span id="LC387" class="line" lang="c"> <span class="p">{</span> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">status</span><span class="p">,</span> <span class="n" style="color: #333;">kind</span><span class="p">;</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="713" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="717" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -713,7 +717,7 @@ int main(int argc, char *argv[])</td>
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713
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717
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<pre style="margin: 0;"> <span id="LC717" class="line" lang="c"> <span class="n" style="color: #333;">r</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">reads</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">i</span><span class="p">;</span></span>
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714
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718
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<pre style="margin: 0;"> <span id="LC718" class="line" lang="c"> <span class="n" style="color: #333;">len</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">r</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">rlen</span><span class="p">;</span></span>
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715
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719
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<pre style="margin: 0;"> <span id="LC719" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">DORED</span><span class="p">)</span></span>
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716
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<pre style="margin: 0;">-<span id="LC716" class="line" lang="c"> <span class="n" style="color: #333;">printf</span><span class="p">(</span><span class="s" style="color: #d14;">"R %d</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">,</span><span class="n" style="color: #333;"><span class="idiff left">i</span></span><span class="o" style="font-weight: 600;"><span class="idiff">+</span></span><span class="mi" style="color: #099;"><span class="idiff right">1</span></span><span class="p">);</span></span>
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720
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<pre style="margin: 0;">+<span id="LC720" class="line" lang="c"> <span class="n" style="color: #333;">printf</span><span class="p">(</span><span class="s" style="color: #d14;">"R %d</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">,</span><span class="n" style="color: #333;"><span class="idiff left">FirstRead</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">+</span></span><span class="idiff"> </span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">i</span></span><span class="o" style="font-weight: 600;"><span class="idiff">+</span></span><span class="mi" style="color: #099;"><span class="idiff">1</span></span><span class="p"><span class="idiff right">)</span>);</span></span>
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717
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721
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<pre style="margin: 0;"> <span id="LC721" class="line" lang="c"></span>
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718
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722
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<pre style="margin: 0;"> <span id="LC722" class="line" lang="c"> <span class="n" style="color: #333;">flags</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">r</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">flags</span><span class="p">;</span></span>
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719
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723
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<pre style="margin: 0;"> <span id="LC723" class="line" lang="c"> <span class="n" style="color: #333;">qv</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="n" style="color: #333;">flags</span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">DB_QV</span><span class="p">);</span></span>
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<a href="https://salsa.debian.org/med-team/dazzdb/commit/d9350062a729e5294b2ca4cd106570d00dfe4719#2456ffbd82dfc564b429e812bec9350385d98542"><strong>DBdust.c</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="155" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="155" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -155,7 +155,7 @@ int main(int argc, char *argv[])</td>
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155
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155
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<pre style="margin: 0;"> <span id="LC155" class="line" lang="c"> <span class="n" style="color: #333;">FWRITE</span><span class="p">(</span><span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">size</span><span class="p">,</span><span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">int</span><span class="p">),</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="n" style="color: #333;">afile</span><span class="p">)</span></span>
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156
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156
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<pre style="margin: 0;"> <span id="LC156" class="line" lang="c"> <span class="n" style="color: #333;">FSEEKO</span><span class="p">(</span><span class="n" style="color: #333;">afile</span><span class="p">,</span><span class="mi" style="color: #099;">0</span><span class="p">,</span><span class="n" style="color: #333;">SEEK_END</span><span class="p">)</span></span>
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157
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157
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<pre style="margin: 0;"> <span id="LC157" class="line" lang="c"> <span class="n" style="color: #333;">FSEEKO</span><span class="p">(</span><span class="n" style="color: #333;">dfile</span><span class="p">,</span><span class="mi" style="color: #099;">0</span><span class="p">,</span><span class="n" style="color: #333;">SEEK_END</span><span class="p">)</span></span>
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158
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<pre style="margin: 0;">-<span id="LC158" class="line" lang="c"> <span class="n" style="color: #333;"><span class="idiff left">indx</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">FTELLO</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">dfile</span></span><span class="p"><span class="idiff right">);</span></span></span>
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<td class="diff-line-num new new_line" data-linenumber="158" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
158
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<pre style="margin: 0;">+<span id="LC158" class="line" lang="c"> <span class="n" style="color: #333;"><span class="idiff left">FTELLO</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">indx</span></span><span class="p"><span class="idiff">,</span></span><span class="n" style="color: #333;"><span class="idiff">dfile</span></span><span class="p"><span class="idiff right">)</span></span></span>
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159
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159
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<pre style="margin: 0;"> <span id="LC159" class="line" lang="c"> <span class="p">}</span></span>
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160
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160
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<pre style="margin: 0;"> <span id="LC160" class="line" lang="c"></span>
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161
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161
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<pre style="margin: 0;"> <span id="LC161" class="line" lang="c"> <span class="n" style="color: #333;">free</span><span class="p">(</span><span class="n" style="color: #333;">pwd</span><span class="p">);</span></span>
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<a href="https://salsa.debian.org/med-team/dazzdb/commit/d9350062a729e5294b2ca4cd106570d00dfe4719#e4e185d9781b49cb1401e85bacb2fec298fdb5dc"><strong>DBshow.c</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="175" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="175" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -175,8 +175,8 @@ int main(int argc, char *argv[])</td>
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175
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<td class="diff-line-num new_line" data-linenumber="175" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
175
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<pre style="margin: 0;"> <span id="LC175" class="line" lang="c"> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stderr</span><span class="p">,</span><span class="s" style="color: #d14;">" -n: Do not show the default read DNA sequences.</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>
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<td class="diff-line-num old_line" data-linenumber="176" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
176
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<td class="diff-line-num new_line" data-linenumber="176" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
176
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<pre style="margin: 0;"> <span id="LC176" class="line" lang="c"> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stderr</span><span class="p">,</span><span class="s" style="color: #d14;">" -m: Show mask intervals and highlight in sequence.</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>
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<td class="diff-line-num old_line" data-linenumber="177" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
177
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<td class="diff-line-num new_line" data-linenumber="177" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
177
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<pre style="margin: 0;"> <span id="LC177" class="line" lang="c"> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stderr</span><span class="p">,</span><span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="178" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
178
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<td class="diff-line-num new_line old" data-linenumber="178" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC178" class="line" lang="c"> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stderr</span><span class="p">,</span><span class="s" style="color: #d14;">" -Q: Produce a .quiva file (ignore all other options but -uU.</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="179" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
179
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<td class="diff-line-num new_line old" data-linenumber="178" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC179" class="line" lang="c"> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stderr</span><span class="p">,</span><span class="s" style="color: #d14;">" -A: Produce a .arrow file (ignore all other options but -uw.</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="178" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
178
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<pre style="margin: 0;">+<span id="LC178" class="line" lang="c"> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stderr</span><span class="p">,</span><span class="s" style="color: #d14;">" -Q: Produce a .quiva file (ignore all other options but -uU<span class="idiff left right">)</span>.</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="179" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
179
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<pre style="margin: 0;">+<span id="LC179" class="line" lang="c"> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stderr</span><span class="p">,</span><span class="s" style="color: #d14;">" -A: Produce a .arrow file (ignore all other options but -uw<span class="idiff left right">)</span>.</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>
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180
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180
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<pre style="margin: 0;"> <span id="LC180" class="line" lang="c"> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stderr</span><span class="p">,</span><span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>
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181
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<td class="diff-line-num new_line" data-linenumber="181" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
181
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<pre style="margin: 0;"> <span id="LC181" class="line" lang="c"> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stderr</span><span class="p">,</span><span class="s" style="color: #d14;">" -U: Use upper case for DNA (default is lower case).</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>
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<td class="diff-line-num old_line" data-linenumber="182" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
182
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<td class="diff-line-num new_line" data-linenumber="182" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
182
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<pre style="margin: 0;"> <span id="LC182" class="line" lang="c"> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stderr</span><span class="p">,</span><span class="s" style="color: #d14;">" -w: Print -w bp per line (default is 80).</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="349" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="349" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -349,14 +349,13 @@ int main(int argc, char *argv[])</td>
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349
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<td class="diff-line-num new_line" data-linenumber="349" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
349
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<pre style="margin: 0;"> <span id="LC349" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">argc</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">3</span><span class="p">)</span></span>
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350
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350
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<pre style="margin: 0;"> <span id="LC350" class="line" lang="c"> <span class="p">{</span> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">argv</span><span class="p">[</span><span class="mi" style="color: #099;">2</span><span class="p">][</span><span class="mi" style="color: #099;">0</span><span class="p">]</span> <span class="o" style="font-weight: 600;">!=</span> <span class="n" style="color: #333;">LAST_READ_SYMBOL</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">argv</span><span class="p">[</span><span class="mi" style="color: #099;">2</span><span class="p">][</span><span class="mi" style="color: #099;">1</span><span class="p">]</span> <span class="o" style="font-weight: 600;">!=</span> <span class="sc" style="color: #d14;">'\0'</span><span class="p">)</span></span>
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351
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<td class="diff-line-num new_line" data-linenumber="351" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
351
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<pre style="margin: 0;"> <span id="LC351" class="line" lang="c"> <span class="p">{</span> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">eptr</span><span class="p">,</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">fptr</span><span class="p">;</span></span>
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352
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<pre style="margin: 0;">-<span id="LC352" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">b</span><span class="p">,</span> <span class="n" style="color: #333;">e</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC352" class="line" lang="c"></span>
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<pre style="margin: 0;">-<span id="LC354" class="line" lang="c"> <span class="n" style="color: #333;"><span class="idiff left">b</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff right"> </span><span class="n" style="color: #333;">strtol</span><span class="p">(</span><span class="n" style="color: #333;">argv</span><span class="p">[</span><span class="mi" style="color: #099;">2</span><span class="p">],</span><span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">eptr</span><span class="p">,</span><span class="mi" style="color: #099;">10</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC355" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">eptr</span> <span class="o" style="font-weight: 600;">></span> <span class="n" style="color: #333;">argv</span><span class="p">[</span><span class="mi" style="color: #099;">2</span><span class="p">]</span><span class="idiff left"> </span><span class="o" style="font-weight: 600;"><span class="idiff">&&</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">b</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">></span></span><span class="idiff"> </span><span class="mi" style="color: #099;"><span class="idiff right">0</span></span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC353" class="line" lang="c"> <span class="n" style="color: #333;">strtol</span><span class="p">(</span><span class="n" style="color: #333;">argv</span><span class="p">[</span><span class="mi" style="color: #099;">2</span><span class="p">],</span><span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">eptr</span><span class="p">,</span><span class="mi" style="color: #099;">10</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC354" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">eptr</span> <span class="o" style="font-weight: 600;">></span> <span class="n" style="color: #333;">argv</span><span class="p">[</span><span class="mi" style="color: #099;">2</span><span class="p">])</span></span>
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<pre style="margin: 0;"> <span id="LC355" class="line" lang="c"> <span class="p">{</span> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">eptr</span> <span class="o" style="font-weight: 600;">==</span> <span class="sc" style="color: #d14;">'-'</span><span class="p">)</span></span>
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357
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<pre style="margin: 0;"> <span id="LC356" class="line" lang="c"> <span class="p">{</span> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">eptr</span><span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">]</span> <span class="o" style="font-weight: 600;">!=</span> <span class="n" style="color: #333;">LAST_READ_SYMBOL</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">eptr</span><span class="p">[</span><span class="mi" style="color: #099;">2</span><span class="p">]</span> <span class="o" style="font-weight: 600;">!=</span> <span class="sc" style="color: #d14;">'\0'</span><span class="p">)</span></span>
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358
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<pre style="margin: 0;">-<span id="LC358" class="line" lang="c"> <span class="p">{</span> <span class="n" style="color: #333;"><span class="idiff left">e</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff right"> </span><span class="n" style="color: #333;">strtol</span><span class="p">(</span><span class="n" style="color: #333;">eptr</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">fptr</span><span class="p">,</span><span class="mi" style="color: #099;">10</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC359" class="line" lang="c"> <span class="n" style="color: #333;">input_pts</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="n" style="color: #333;">fptr</span> <span class="o" style="font-weight: 600;"><=</span> <span class="n" style="color: #333;">eptr</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">1</span> <span class="o" style="font-weight: 600;">||</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">fptr</span> <span class="o" style="font-weight: 600;">!=</span> <span class="sc" style="color: #d14;">'\0'</span><span class="idiff left"> </span><span class="o" style="font-weight: 600;"><span class="idiff">||</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">e</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff"><=</span></span><span class="idiff"> </span><span class="mi" style="color: #099;"><span class="idiff right">0</span></span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC357" class="line" lang="c"> <span class="p">{</span> <span class="n" style="color: #333;">strtol</span><span class="p">(</span><span class="n" style="color: #333;">eptr</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">fptr</span><span class="p">,</span><span class="mi" style="color: #099;">10</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC358" class="line" lang="c"> <span class="n" style="color: #333;">input_pts</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="n" style="color: #333;">fptr</span> <span class="o" style="font-weight: 600;"><=</span> <span class="n" style="color: #333;">eptr</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">1</span> <span class="o" style="font-weight: 600;">||</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">fptr</span> <span class="o" style="font-weight: 600;">!=</span> <span class="sc" style="color: #d14;">'\0'</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC359" class="line" lang="c"> <span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC360" class="line" lang="c"> <span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC361" class="line" lang="c"> <span class="k" style="font-weight: 600;">else</span></span>
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<a href="https://salsa.debian.org/med-team/dazzdb/commit/d9350062a729e5294b2ca4cd106570d00dfe4719#9c4bce755c62bfe91cf1d9e48fde88ab13d7a571"><strong>DBsplit.c</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -32,7 +32,15 @@</td>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#define PATHSEP "/"</span></span>
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33
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="c"></span>
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="c"><span class="k" style="font-weight: 600;">static</span> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">Usage</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"[-af] [-x<int>] [-s<double(200.)>] <path:db|dam>"</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="c"><span class="k" style="font-weight: 600;">static</span> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">Usage</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"[-aflm] [-x<int>] [-s<double(200.)>] <path:db|dam>"</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="c"></span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="c"><span class="k" style="font-weight: 600;">static</span> <span class="n" style="color: #333;">DAZZ_READ</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">reads</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="c"></span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="c"><span class="k" style="font-weight: 600;">static</span> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="nf" style="color: #900; font-weight: 600;">MSORT</span><span class="p">(</span><span class="k" style="font-weight: 600;">const</span> <span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">l</span><span class="p">,</span> <span class="k" style="font-weight: 600;">const</span> <span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">r</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="c"><span class="p">{</span> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">x</span> <span class="o" style="font-weight: 600;">=</span> <span class="o" style="font-weight: 600;">*</span><span class="p">((</span><span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="o" style="font-weight: 600;">*</span><span class="p">)</span> <span class="n" style="color: #333;">l</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">y</span> <span class="o" style="font-weight: 600;">=</span> <span class="o" style="font-weight: 600;">*</span><span class="p">((</span><span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="o" style="font-weight: 600;">*</span><span class="p">)</span> <span class="n" style="color: #333;">r</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="c"> <span class="k" style="font-weight: 600;">return</span> <span class="p">(</span><span class="n" style="color: #333;">reads</span><span class="p">[</span><span class="n" style="color: #333;">x</span><span class="p">].</span><span class="n" style="color: #333;">rlen</span> <span class="o" style="font-weight: 600;">-</span> <span class="n" style="color: #333;">reads</span><span class="p">[</span><span class="n" style="color: #333;">y</span><span class="p">].</span><span class="n" style="color: #333;">rlen</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="c"><span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="c"></span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="c"><span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="nf" style="color: #900; font-weight: 600;">main</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">argc</span><span class="p">,</span> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">argv</span><span class="p">[])</span></span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="c"><span class="p">{</span> <span class="n" style="color: #333;">DAZZ_DB</span> <span class="n" style="color: #333;">db</span><span class="p">,</span> <span class="n" style="color: #333;">dbs</span><span class="p">;</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -40,11 +48,16 @@ int main(int argc, char *argv[])</td>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">FILE</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">dbfile</span><span class="p">,</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">ixfile</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">dbfile_name</span><span class="p">,</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">ixfile_name</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">status</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">nreads</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="c"></span>
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">medmax</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">msort</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">;</span></span>
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55
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="c"></span>
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56
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">FORCE</span><span class="p">;</span></span>
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45
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57
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">ALL</span><span class="p">;</span></span>
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46
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58
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">CUTOFF</span><span class="p">;</span></span>
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47
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59
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="c"> <span class="n" style="color: #333;">int64</span> <span class="n" style="color: #333;">SIZE</span><span class="p">;</span></span>
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60
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">SELECT</span><span class="p">;</span></span>
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48
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61
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="c"></span>
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49
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62
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<pre style="margin: 0;"> <span id="LC62" class="line" lang="c"> <span class="p">{</span> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">i</span><span class="p">,</span> <span class="n" style="color: #333;">j</span><span class="p">,</span> <span class="n" style="color: #333;">k</span><span class="p">;</span></span>
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50
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63
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">flags</span><span class="p">[</span><span class="mi" style="color: #099;">128</span><span class="p">];</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="53" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="66" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -53,6 +66,7 @@ int main(int argc, char *argv[])</td>
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53
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66
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<pre style="margin: 0;"> <span id="LC66" class="line" lang="c"></span>
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54
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<pre style="margin: 0;"> <span id="LC67" class="line" lang="c"> <span class="n" style="color: #333;">ARG_INIT</span><span class="p">(</span><span class="s" style="color: #d14;">"DBsplit"</span><span class="p">)</span></span>
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68
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<pre style="margin: 0;"> <span id="LC68" class="line" lang="c"></span>
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="c"> <span class="n" style="color: #333;">SELECT</span> <span class="o" style="font-weight: 600;">=</span> <span class="o" style="font-weight: 600;">-</span><span class="mi" style="color: #099;">1</span><span class="p">;</span></span>
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56
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70
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<pre style="margin: 0;"> <span id="LC70" class="line" lang="c"> <span class="n" style="color: #333;">CUTOFF</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span></span>
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57
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71
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<pre style="margin: 0;"> <span id="LC71" class="line" lang="c"> <span class="n" style="color: #333;">size</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">200</span><span class="p">;</span></span>
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58
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72
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<pre style="margin: 0;"> <span id="LC72" class="line" lang="c"></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="61" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="75" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -61,7 +75,7 @@ int main(int argc, char *argv[])</td>
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61
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75
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<pre style="margin: 0;"> <span id="LC75" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">argv</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">][</span><span class="mi" style="color: #099;">0</span><span class="p">]</span> <span class="o" style="font-weight: 600;">==</span> <span class="sc" style="color: #d14;">'-'</span><span class="p">)</span></span>
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62
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76
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<pre style="margin: 0;"> <span id="LC76" class="line" lang="c"> <span class="k" style="font-weight: 600;">switch</span> <span class="p">(</span><span class="n" style="color: #333;">argv</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">][</span><span class="mi" style="color: #099;">1</span><span class="p">])</span></span>
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63
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<pre style="margin: 0;"> <span id="LC77" class="line" lang="c"> <span class="p">{</span> <span class="k" style="font-weight: 600;">default</span><span class="o" style="font-weight: 600;">:</span></span>
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64
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<pre style="margin: 0;">-<span id="LC64" class="line" lang="c"> <span class="n" style="color: #333;">ARG_FLAGS</span><span class="p">(</span><span class="s" style="color: #d14;">"af"</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="c"> <span class="n" style="color: #333;">ARG_FLAGS</span><span class="p">(</span><span class="s" style="color: #d14;">"af<span class="idiff left right">lm</span>"</span><span class="p">)</span></span>
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65
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<pre style="margin: 0;"> <span id="LC79" class="line" lang="c"> <span class="k" style="font-weight: 600;">break</span><span class="p">;</span></span>
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66
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80
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<pre style="margin: 0;"> <span id="LC80" class="line" lang="c"> <span class="k" style="font-weight: 600;">case</span> <span class="sc" style="color: #d14;">'x'</span><span class="p">:</span></span>
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67
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81
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<pre style="margin: 0;"> <span id="LC81" class="line" lang="c"> <span class="n" style="color: #333;">ARG_NON_NEGATIVE</span><span class="p">(</span><span class="n" style="color: #333;">CUTOFF</span><span class="p">,</span><span class="s" style="color: #d14;">"Min read length cutoff"</span><span class="p">)</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="82" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="96" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -82,6 +96,16 @@ int main(int argc, char *argv[])</td>
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82
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<td class="diff-line-num new_line" data-linenumber="96" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
96
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<pre style="margin: 0;"> <span id="LC96" class="line" lang="c"> <span class="n" style="color: #333;">ALL</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">flags</span><span class="p">[</span><span class="sc" style="color: #d14;">'a'</span><span class="p">];</span></span>
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83
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<td class="diff-line-num new_line" data-linenumber="97" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
97
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<pre style="margin: 0;"> <span id="LC97" class="line" lang="c"> <span class="n" style="color: #333;">FORCE</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">flags</span><span class="p">[</span><span class="sc" style="color: #d14;">'f'</span><span class="p">];</span></span>
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84
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98
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<pre style="margin: 0;"> <span id="LC98" class="line" lang="c"></span>
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99
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<pre style="margin: 0;">+<span id="LC99" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">flags</span><span class="p">[</span><span class="sc" style="color: #d14;">'l'</span><span class="p">])</span></span>
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100
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<pre style="margin: 0;">+<span id="LC100" class="line" lang="c"> <span class="p">{</span> <span class="n" style="color: #333;">SELECT</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="101" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
101
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<pre style="margin: 0;">+<span id="LC101" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">flags</span><span class="p">[</span><span class="sc" style="color: #d14;">'m'</span><span class="p">])</span></span>
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<td class="diff-line-num new new_line" data-linenumber="102" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
102
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<pre style="margin: 0;">+<span id="LC102" class="line" lang="c"> <span class="p">{</span> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stderr</span><span class="p">,</span><span class="s" style="color: #d14;">"%s: Cannot set both -l and -m, mutually exclusive</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">,</span><span class="n" style="color: #333;">Prog_Name</span><span class="p">);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="103" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
103
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<pre style="margin: 0;">+<span id="LC103" class="line" lang="c"> <span class="n" style="color: #333;">exit</span> <span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">);</span></span>
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104
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<pre style="margin: 0;">+<span id="LC104" class="line" lang="c"> <span class="p">}</span></span>
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105
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<pre style="margin: 0;">+<span id="LC105" class="line" lang="c"> <span class="p">}</span></span>
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<td class="diff-line-num new new_line" data-linenumber="106" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
106
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<pre style="margin: 0;">+<span id="LC106" class="line" lang="c"> <span class="k" style="font-weight: 600;">else</span> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">flags</span><span class="p">[</span><span class="sc" style="color: #d14;">'m'</span><span class="p">])</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="107" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
107
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<pre style="margin: 0;">+<span id="LC107" class="line" lang="c"> <span class="n" style="color: #333;">SELECT</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">1</span><span class="p">;</span></span>
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108
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<pre style="margin: 0;">+<span id="LC108" class="line" lang="c"></span>
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85
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<td class="diff-line-num new_line" data-linenumber="109" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
109
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<pre style="margin: 0;"> <span id="LC109" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">argc</span> <span class="o" style="font-weight: 600;">!=</span> <span class="mi" style="color: #099;">2</span><span class="p">)</span></span>
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86
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110
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<pre style="margin: 0;"> <span id="LC110" class="line" lang="c"> <span class="p">{</span> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stderr</span><span class="p">,</span><span class="s" style="color: #d14;">"Usage: %s %s</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">,</span><span class="n" style="color: #333;">Prog_Name</span><span class="p">,</span><span class="n" style="color: #333;">Usage</span><span class="p">);</span></span>
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87
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<td class="diff-line-num new_line" data-linenumber="111" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
111
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<pre style="margin: 0;"> <span id="LC111" class="line" lang="c"> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stderr</span><span class="p">,</span><span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>
</pre>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="89" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="113" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -89,6 +113,9 @@ int main(int argc, char *argv[])</td>
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89
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113
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<pre style="margin: 0;"> <span id="LC113" class="line" lang="c"> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stderr</span><span class="p">,</span><span class="s" style="color: #d14;">" -x: Trimmed DB has reads >= this threshold.</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>
</pre>
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90
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<td class="diff-line-num new_line" data-linenumber="114" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
114
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<pre style="margin: 0;"> <span id="LC114" class="line" lang="c"> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stderr</span><span class="p">,</span><span class="s" style="color: #d14;">" -a: Trimmed DB contains all reads from a well (not just longest).</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>
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<td class="diff-line-num old_line" data-linenumber="91" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
91
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<td class="diff-line-num new_line" data-linenumber="115" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
115
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<pre style="margin: 0;"> <span id="LC115" class="line" lang="c"> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stderr</span><span class="p">,</span><span class="s" style="color: #d14;">" -f: Force the split to occur even if already split.</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>
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<td class="diff-line-num new old_line" data-linenumber="92" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="116" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
116
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<pre style="margin: 0;">+<span id="LC116" class="line" lang="c"> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stderr</span><span class="p">,</span><span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>
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<td class="diff-line-num new old_line" data-linenumber="92" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="117" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
117
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<pre style="margin: 0;">+<span id="LC117" class="line" lang="c"> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stderr</span><span class="p">,</span><span class="s" style="color: #d14;">" -l: Set primary read for a well to be the longest.</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>
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<td class="diff-line-num new old_line" data-linenumber="92" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="118" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
118
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<pre style="margin: 0;">+<span id="LC118" class="line" lang="c"> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stderr</span><span class="p">,</span><span class="s" style="color: #d14;">" -m: Set primary read for a well to be the median.</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>
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<td class="diff-line-num old_line" data-linenumber="92" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
92
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<td class="diff-line-num new_line" data-linenumber="119" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
119
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<pre style="margin: 0;"> <span id="LC119" class="line" lang="c"> <span class="n" style="color: #333;">exit</span> <span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">);</span></span>
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<td class="diff-line-num old_line" data-linenumber="93" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
93
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<td class="diff-line-num new_line" data-linenumber="120" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
120
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<pre style="margin: 0;"> <span id="LC120" class="line" lang="c"> <span class="p">}</span></span>
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<td class="diff-line-num old_line" data-linenumber="94" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
94
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<td class="diff-line-num new_line" data-linenumber="121" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
121
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<pre style="margin: 0;"> <span id="LC121" class="line" lang="c"> <span class="p">}</span></span>
</pre>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="102" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="129" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -102,6 +129,8 @@ int main(int argc, char *argv[])</td>
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<td class="diff-line-num old_line" data-linenumber="102" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
102
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<td class="diff-line-num new_line" data-linenumber="129" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
129
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<pre style="margin: 0;"> <span id="LC129" class="line" lang="c"> <span class="p">{</span> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stderr</span><span class="p">,</span><span class="s" style="color: #d14;">"%s: Cannot be called on a block: %s</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">,</span><span class="n" style="color: #333;">Prog_Name</span><span class="p">,</span><span class="n" style="color: #333;">argv</span><span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">]);</span></span>
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<td class="diff-line-num old_line" data-linenumber="103" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
103
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<td class="diff-line-num new_line" data-linenumber="130" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
130
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<pre style="margin: 0;"> <span id="LC130" class="line" lang="c"> <span class="n" style="color: #333;">exit</span> <span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">);</span></span>
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<td class="diff-line-num old_line" data-linenumber="104" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
104
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<td class="diff-line-num new_line" data-linenumber="131" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
131
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<pre style="margin: 0;"> <span id="LC131" class="line" lang="c"> <span class="p">}</span></span>
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<td class="diff-line-num new old_line" data-linenumber="105" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="132" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
132
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<pre style="margin: 0;">+<span id="LC132" class="line" lang="c"> <span class="n" style="color: #333;">reads</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">db</span><span class="p">.</span><span class="n" style="color: #333;">reads</span><span class="p">;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="133" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
133
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<pre style="margin: 0;">+<span id="LC133" class="line" lang="c"> <span class="n" style="color: #333;">nreads</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">db</span><span class="p">.</span><span class="n" style="color: #333;">ureads</span><span class="p">;</span></span>
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105
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<td class="diff-line-num new_line" data-linenumber="134" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
134
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<pre style="margin: 0;"> <span id="LC134" class="line" lang="c"></span>
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<td class="diff-line-num old_line" data-linenumber="106" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
106
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<td class="diff-line-num new_line" data-linenumber="135" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
135
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<pre style="margin: 0;"> <span id="LC135" class="line" lang="c"> <span class="p">{</span> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">pwd</span><span class="p">,</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">root</span><span class="p">;</span></span>
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<td class="diff-line-num old_line" data-linenumber="107" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
107
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<td class="diff-line-num new_line" data-linenumber="136" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
136
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<pre style="margin: 0;"> <span id="LC136" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="n" style="color: #333;">buffer</span><span class="p">[</span><span class="mi" style="color: #099;">2</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">MAX_NAME</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">100</span><span class="p">];</span></span>
</pre>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="146" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="175" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -146,18 +175,59 @@ int main(int argc, char *argv[])</td>
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146
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<td class="diff-line-num new_line" data-linenumber="175" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
175
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<pre style="margin: 0;"> <span id="LC175" class="line" lang="c"> <span class="p">}</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="147" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
147
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<td class="diff-line-num new_line" data-linenumber="176" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
176
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<pre style="margin: 0;"> <span id="LC176" class="line" lang="c"> <span class="p">}</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="148" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
148
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177
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<pre style="margin: 0;"> <span id="LC177" class="line" lang="c"></span>
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<td class="diff-line-num old old_line" data-linenumber="149" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
149
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<td class="diff-line-num new_line old" data-linenumber="178" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC149" class="line" lang="c"> <span class="n" style="color: #333;"><span class="idiff left">dbpos</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">FTELLO</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">dbfile</span></span><span class="p"><span class="idiff right">);</span></span></span>
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<td class="diff-line-num new old_line" data-linenumber="150" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="178" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
178
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<pre style="margin: 0;">+<span id="LC178" class="line" lang="c"> <span class="n" style="color: #333;"><span class="idiff left">FTELLO</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">dbpos</span></span><span class="p"><span class="idiff">,</span></span><span class="n" style="color: #333;"><span class="idiff">dbfile</span></span><span class="p"><span class="idiff right">)</span></span></span>
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150
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<td class="diff-line-num new_line" data-linenumber="179" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
179
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<pre style="margin: 0;"> <span id="LC179" class="line" lang="c"> <span class="n" style="color: #333;">FSEEKO</span><span class="p">(</span><span class="n" style="color: #333;">dbfile</span><span class="p">,</span><span class="n" style="color: #333;">dbpos</span><span class="p">,</span><span class="n" style="color: #333;">SEEK_SET</span><span class="p">)</span></span>
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151
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<td class="diff-line-num new_line" data-linenumber="180" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
180
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<pre style="margin: 0;"> <span id="LC180" class="line" lang="c"> <span class="n" style="color: #333;">FPRINTF</span><span class="p">(</span><span class="n" style="color: #333;">dbfile</span><span class="p">,</span><span class="n" style="color: #333;">DB_NBLOCK</span><span class="p">,</span><span class="mi" style="color: #099;">0</span><span class="p">)</span></span>
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152
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181
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<pre style="margin: 0;"> <span id="LC181" class="line" lang="c"> <span class="n" style="color: #333;">FPRINTF</span><span class="p">(</span><span class="n" style="color: #333;">dbfile</span><span class="p">,</span><span class="n" style="color: #333;">DB_PARAMS</span><span class="p">,</span><span class="n" style="color: #333;">SIZE</span><span class="p">,</span><span class="n" style="color: #333;">CUTOFF</span><span class="p">,</span><span class="n" style="color: #333;">ALL</span><span class="p">)</span></span>
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153
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182
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<pre style="margin: 0;"> <span id="LC182" class="line" lang="c"> <span class="p">}</span></span>
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154
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183
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<pre style="margin: 0;"> <span id="LC183" class="line" lang="c"></span>
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155
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<td class="diff-line-num new_line old" data-linenumber="184" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC155" class="line" lang="c"> <span class="p">{</span> <span class="n" style="color: #333;">DAZZ_READ</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">reads</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">db</span><span class="p">.</span><span class="n" style="color: #333;">reads</span><span class="p">;</span></span>
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156
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<td class="diff-line-num new_line old" data-linenumber="184" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC156" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">nreads</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">db</span><span class="p">.</span><span class="n" style="color: #333;">ureads</span><span class="p">;</span></span>
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157
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<td class="diff-line-num new_line old" data-linenumber="184" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC157" class="line" lang="c"> <span class="n" style="color: #333;">int64</span> <span class="n" style="color: #333;">totlen</span><span class="p">;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="184" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
184
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<pre style="margin: 0;">+<span id="LC184" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">SELECT</span> <span class="o" style="font-weight: 600;">>=</span> <span class="mi" style="color: #099;">0</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="185" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
185
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<pre style="margin: 0;">+<span id="LC185" class="line" lang="c"> <span class="p">{</span> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">i</span><span class="p">,</span> <span class="n" style="color: #333;">j</span><span class="p">,</span> <span class="n" style="color: #333;">k</span><span class="p">,</span> <span class="n" style="color: #333;">h</span><span class="p">;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="186" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
186
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<pre style="margin: 0;">+<span id="LC186" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">off</span><span class="p">;</span></span>
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187
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<pre style="margin: 0;">+<span id="LC187" class="line" lang="c"></span>
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<td class="diff-line-num new new_line" data-linenumber="188" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
188
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<pre style="margin: 0;">+<span id="LC188" class="line" lang="c"> <span class="n" style="color: #333;">off</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="o" style="font-weight: 600;">~</span> <span class="n" style="color: #333;">DB_BEST</span><span class="p">);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="189" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
189
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<pre style="margin: 0;">+<span id="LC189" class="line" lang="c"></span>
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<td class="diff-line-num new new_line" data-linenumber="190" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
190
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<pre style="margin: 0;">+<span id="LC190" class="line" lang="c"> <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span><span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">nreads</span><span class="p">;</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">j</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="191" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
191
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<pre style="margin: 0;">+<span id="LC191" class="line" lang="c"> <span class="p">{</span> <span class="n" style="color: #333;">j</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">1</span><span class="p">;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="192" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
192
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<pre style="margin: 0;">+<span id="LC192" class="line" lang="c"> <span class="n" style="color: #333;">reads</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">].</span><span class="n" style="color: #333;">flags</span> <span class="o" style="font-weight: 600;">&=</span> <span class="n" style="color: #333;">off</span><span class="p">;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="193" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
193
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<pre style="margin: 0;">+<span id="LC193" class="line" lang="c"> <span class="k" style="font-weight: 600;">while</span> <span class="p">((</span><span class="n" style="color: #333;">reads</span><span class="p">[</span><span class="n" style="color: #333;">j</span><span class="p">].</span><span class="n" style="color: #333;">flags</span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">DB_CSS</span><span class="p">)</span> <span class="o" style="font-weight: 600;">!=</span> <span class="mi" style="color: #099;">0</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
194
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<pre style="margin: 0;">+<span id="LC194" class="line" lang="c"> <span class="n" style="color: #333;">reads</span><span class="p">[</span><span class="n" style="color: #333;">j</span><span class="o" style="font-weight: 600;">++</span><span class="p">].</span><span class="n" style="color: #333;">flags</span> <span class="o" style="font-weight: 600;">&=</span> <span class="n" style="color: #333;">off</span><span class="p">;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="195" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
195
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<pre style="margin: 0;">+<span id="LC195" class="line" lang="c"> </span>
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<td class="diff-line-num new new_line" data-linenumber="196" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
196
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<pre style="margin: 0;">+<span id="LC196" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">j</span><span class="o" style="font-weight: 600;">-</span><span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;"><=</span> <span class="mi" style="color: #099;">1</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="197" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
197
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<pre style="margin: 0;">+<span id="LC197" class="line" lang="c"> <span class="p">{</span> <span class="n" style="color: #333;">reads</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">].</span><span class="n" style="color: #333;">flags</span> <span class="o" style="font-weight: 600;">|=</span> <span class="n" style="color: #333;">DB_BEST</span><span class="p">;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="198" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
198
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<pre style="margin: 0;">+<span id="LC198" class="line" lang="c"> <span class="k" style="font-weight: 600;">continue</span><span class="p">;</span></span>
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199
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<pre style="margin: 0;">+<span id="LC199" class="line" lang="c"> <span class="p">}</span></span>
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200
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<pre style="margin: 0;">+<span id="LC200" class="line" lang="c"> </span>
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<td class="diff-line-num new new_line" data-linenumber="201" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
201
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<pre style="margin: 0;">+<span id="LC201" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">SELECT</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">0</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="202" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
202
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<pre style="margin: 0;">+<span id="LC202" class="line" lang="c"> <span class="p">{</span> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">mlen</span><span class="p">;</span></span>
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203
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<pre style="margin: 0;">+<span id="LC203" class="line" lang="c"></span>
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<td class="diff-line-num new new_line" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
204
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<pre style="margin: 0;">+<span id="LC204" class="line" lang="c"> <span class="n" style="color: #333;">mlen</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">reads</span><span class="p">[</span><span class="n" style="color: #333;">h</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">i</span><span class="p">].</span><span class="n" style="color: #333;">rlen</span><span class="p">;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="205" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
205
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<pre style="margin: 0;">+<span id="LC205" class="line" lang="c"> <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span><span class="n" style="color: #333;">k</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">1</span><span class="p">;</span> <span class="n" style="color: #333;">k</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">j</span><span class="p">;</span> <span class="n" style="color: #333;">k</span><span class="o" style="font-weight: 600;">++</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="206" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
206
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<pre style="margin: 0;">+<span id="LC206" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">mlen</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">reads</span><span class="p">[</span><span class="n" style="color: #333;">k</span><span class="p">].</span><span class="n" style="color: #333;">rlen</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="207" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
207
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<pre style="margin: 0;">+<span id="LC207" class="line" lang="c"> <span class="n" style="color: #333;">mlen</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">reads</span><span class="p">[</span><span class="n" style="color: #333;">h</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">k</span><span class="p">].</span><span class="n" style="color: #333;">rlen</span><span class="p">;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="208" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
208
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<pre style="margin: 0;">+<span id="LC208" class="line" lang="c"> <span class="p">}</span></span>
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<td class="diff-line-num new new_line" data-linenumber="209" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
209
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<pre style="margin: 0;">+<span id="LC209" class="line" lang="c"> <span class="k" style="font-weight: 600;">else</span></span>
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<td class="diff-line-num new new_line" data-linenumber="210" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
210
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<pre style="margin: 0;">+<span id="LC210" class="line" lang="c"> <span class="p">{</span> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">j</span><span class="o" style="font-weight: 600;">-</span><span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;">></span> <span class="n" style="color: #333;">medmax</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="211" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
211
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<pre style="margin: 0;">+<span id="LC211" class="line" lang="c"> <span class="p">{</span> <span class="n" style="color: #333;">medmax</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">1</span><span class="p">.</span><span class="mi" style="color: #099;">2</span><span class="o" style="font-weight: 600;">*</span><span class="p">(</span><span class="n" style="color: #333;">j</span><span class="o" style="font-weight: 600;">-</span><span class="n" style="color: #333;">i</span><span class="p">)</span> <span class="o" style="font-weight: 600;">+</span> <span class="mi" style="color: #099;">1000</span><span class="p">;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="212" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
212
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<pre style="margin: 0;">+<span id="LC212" class="line" lang="c"> <span class="n" style="color: #333;">msort</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="o" style="font-weight: 600;">*</span><span class="p">)</span> <span class="n" style="color: #333;">Realloc</span><span class="p">(</span><span class="n" style="color: #333;">msort</span><span class="p">,</span><span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">int</span><span class="p">)</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">medmax</span><span class="p">,</span><span class="s" style="color: #d14;">"Allocating Median Array"</span><span class="p">);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="213" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
213
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<pre style="margin: 0;">+<span id="LC213" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">msort</span> <span class="o" style="font-weight: 600;">==</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="214" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
214
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<pre style="margin: 0;">+<span id="LC214" class="line" lang="c"> <span class="n" style="color: #333;">exit</span> <span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">);</span></span>
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215
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<pre style="margin: 0;">+<span id="LC215" class="line" lang="c"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC216" class="line" lang="c"> <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span><span class="n" style="color: #333;">k</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">i</span><span class="p">;</span> <span class="n" style="color: #333;">k</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">j</span><span class="p">;</span> <span class="n" style="color: #333;">k</span><span class="o" style="font-weight: 600;">++</span><span class="p">)</span></span>
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217
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<pre style="margin: 0;">+<span id="LC217" class="line" lang="c"> <span class="n" style="color: #333;">msort</span><span class="p">[</span><span class="n" style="color: #333;">k</span><span class="o" style="font-weight: 600;">-</span><span class="n" style="color: #333;">i</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">k</span><span class="p">;</span></span>
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218
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<pre style="margin: 0;">+<span id="LC218" class="line" lang="c"> <span class="n" style="color: #333;">qsort</span><span class="p">(</span><span class="n" style="color: #333;">msort</span><span class="p">,</span><span class="n" style="color: #333;">j</span><span class="o" style="font-weight: 600;">-</span><span class="n" style="color: #333;">i</span><span class="p">,</span><span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">int</span><span class="p">),</span><span class="n" style="color: #333;">MSORT</span><span class="p">);</span></span>
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219
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<pre style="margin: 0;">+<span id="LC219" class="line" lang="c"> <span class="n" style="color: #333;">h</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">msort</span><span class="p">[(</span><span class="n" style="color: #333;">j</span><span class="o" style="font-weight: 600;">-</span><span class="n" style="color: #333;">i</span><span class="p">)</span><span class="o" style="font-weight: 600;">/</span><span class="mi" style="color: #099;">2</span><span class="p">];</span></span>
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220
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<pre style="margin: 0;">+<span id="LC220" class="line" lang="c"> <span class="p">}</span></span>
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221
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<pre style="margin: 0;">+<span id="LC221" class="line" lang="c"> <span class="n" style="color: #333;">reads</span><span class="p">[</span><span class="n" style="color: #333;">h</span><span class="p">].</span><span class="n" style="color: #333;">flags</span> <span class="o" style="font-weight: 600;">|=</span> <span class="n" style="color: #333;">DB_BEST</span><span class="p">;</span></span>
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222
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<pre style="margin: 0;">+<span id="LC222" class="line" lang="c"> <span class="p">}</span> </span>
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<pre style="margin: 0;">+<span id="LC223" class="line" lang="c"> <span class="p">}</span></span>
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224
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<pre style="margin: 0;">+<span id="LC224" class="line" lang="c"></span>
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225
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<pre style="margin: 0;">+<span id="LC225" class="line" lang="c"></span>
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226
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<pre style="margin: 0;">+<span id="LC226" class="line" lang="c"> <span class="p">{</span> <span class="n" style="color: #333;">int64</span> <span class="n" style="color: #333;">totlen</span><span class="p">;</span></span>
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158
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227
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<pre style="margin: 0;"> <span id="LC227" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">nblock</span><span class="p">,</span> <span class="n" style="color: #333;">ireads</span><span class="p">,</span> <span class="n" style="color: #333;">treads</span><span class="p">,</span> <span class="n" style="color: #333;">rlen</span><span class="p">,</span> <span class="n" style="color: #333;">fno</span><span class="p">;</span></span>
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159
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<pre style="margin: 0;">-<span id="LC159" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">i</span><span class="p">;</span></span>
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228
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<pre style="margin: 0;">+<span id="LC228" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">i</span><span class="p"><span class="idiff left">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">upos</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff right">css</span></span><span class="p">;</span></span>
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160
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229
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<pre style="margin: 0;"> <span id="LC229" class="line" lang="c"></span>
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230
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<pre style="margin: 0;">+<span id="LC230" class="line" lang="c"> <span class="n" style="color: #333;">css</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span></span>
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161
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231
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<pre style="margin: 0;"> <span id="LC231" class="line" lang="c"> <span class="n" style="color: #333;">nblock</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span></span>
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162
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232
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<pre style="margin: 0;"> <span id="LC232" class="line" lang="c"> <span class="n" style="color: #333;">totlen</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span></span>
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163
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233
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<pre style="margin: 0;"> <span id="LC233" class="line" lang="c"> <span class="n" style="color: #333;">ireads</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="166" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="236" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -166,16 +236,19 @@ int main(int argc, char *argv[])</td>
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166
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236
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<pre style="margin: 0;"> <span id="LC236" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">ALL</span><span class="p">)</span></span>
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167
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237
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<pre style="margin: 0;"> <span id="LC237" class="line" lang="c"> <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span><span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">nreads</span><span class="p">;</span> <span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">++</span><span class="p">)</span></span>
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168
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<td class="diff-line-num new_line" data-linenumber="238" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
238
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<pre style="margin: 0;"> <span id="LC238" class="line" lang="c"> <span class="p">{</span> <span class="n" style="color: #333;">rlen</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">reads</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">].</span><span class="n" style="color: #333;">rlen</span><span class="p">;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="239" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
239
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<pre style="margin: 0;">+<span id="LC239" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">((</span><span class="n" style="color: #333;">reads</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">].</span><span class="n" style="color: #333;">flags</span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">DB_CSS</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">0</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="240" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
240
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<pre style="margin: 0;">+<span id="LC240" class="line" lang="c"> <span class="n" style="color: #333;">css</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span></span>
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<td class="diff-line-num old_line" data-linenumber="169" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
169
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<td class="diff-line-num new_line" data-linenumber="241" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
241
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<pre style="margin: 0;"> <span id="LC241" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">rlen</span> <span class="o" style="font-weight: 600;">>=</span> <span class="n" style="color: #333;">CUTOFF</span><span class="p">)</span></span>
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<td class="diff-line-num old old_line" data-linenumber="170" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
170
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<td class="diff-line-num new_line old" data-linenumber="242" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC170" class="line" lang="c"> <span class="p">{</span> <span class="n" style="color: #333;">ireads</span> <span class="o" style="font-weight: 600;">+=</span> <span class="mi" style="color: #099;">1</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="171" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
171
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<td class="diff-line-num new_line old" data-linenumber="242" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC171" class="line" lang="c"> <span class="n" style="color: #333;">treads</span> <span class="o" style="font-weight: 600;">+=</span> <span class="mi" style="color: #099;">1</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="172" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
172
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<td class="diff-line-num new_line old" data-linenumber="242" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC172" class="line" lang="c"> <span class="n" style="color: #333;">totlen</span> <span class="o" style="font-weight: 600;">+=</span> <span class="n" style="color: #333;">rlen</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="173" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
173
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<pre style="margin: 0;">-<span id="LC173" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">totlen</span> <span class="o" style="font-weight: 600;">>=</span> <span class="n" style="color: #333;">SIZE</span><span class="p">)</span></span>
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<td class="diff-line-num old old_line" data-linenumber="174" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
174
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<td class="diff-line-num new_line old" data-linenumber="242" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC174" class="line" lang="c"> <span class="p">{</span> <span class="n" style="color: #333;">FPRINTF</span><span class="p">(</span><span class="n" style="color: #333;">dbfile</span><span class="p">,</span><span class="n" style="color: #333;">DB_BDATA</span><span class="p">,</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="n" style="color: #333;">treads</span><span class="p">)</span></span>
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<td class="diff-line-num new old_line" data-linenumber="175" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="242" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
242
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<pre style="margin: 0;">+<span id="LC242" class="line" lang="c"> <span class="p">{</span> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">css</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">0</span> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">totlen</span> <span class="o" style="font-weight: 600;">>=</span> <span class="n" style="color: #333;">SIZE</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="243" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
243
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<pre style="margin: 0;">+<span id="LC243" class="line" lang="c"> <span class="p">{</span> <span class="n" style="color: #333;">FPRINTF</span><span class="p">(</span><span class="n" style="color: #333;">dbfile</span><span class="p">,</span><span class="n" style="color: #333;">DB_BDATA</span><span class="p">,</span><span class="n" style="color: #333;">i</span><span class="p">,</span><span class="n" style="color: #333;">treads</span><span class="p">)</span></span>
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175
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244
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<pre style="margin: 0;"> <span id="LC244" class="line" lang="c"> <span class="n" style="color: #333;">totlen</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span></span>
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176
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245
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<pre style="margin: 0;"> <span id="LC245" class="line" lang="c"> <span class="n" style="color: #333;">ireads</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span></span>
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177
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<td class="diff-line-num new_line" data-linenumber="246" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
246
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<pre style="margin: 0;"> <span id="LC246" class="line" lang="c"> <span class="n" style="color: #333;">nblock</span> <span class="o" style="font-weight: 600;">+=</span> <span class="mi" style="color: #099;">1</span><span class="p">;</span></span>
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178
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247
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<pre style="margin: 0;"> <span id="LC247" class="line" lang="c"> <span class="p">}</span></span>
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<td class="diff-line-num new new_line" data-linenumber="248" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
248
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<pre style="margin: 0;">+<span id="LC248" class="line" lang="c"> <span class="n" style="color: #333;">ireads</span> <span class="o" style="font-weight: 600;">+=</span> <span class="mi" style="color: #099;">1</span><span class="p">;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="249" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
249
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<pre style="margin: 0;">+<span id="LC249" class="line" lang="c"> <span class="n" style="color: #333;">treads</span> <span class="o" style="font-weight: 600;">+=</span> <span class="mi" style="color: #099;">1</span><span class="p">;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="250" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
250
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<pre style="margin: 0;">+<span id="LC250" class="line" lang="c"> <span class="n" style="color: #333;">totlen</span> <span class="o" style="font-weight: 600;">+=</span> <span class="n" style="color: #333;">rlen</span><span class="p">;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="251" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
251
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<pre style="margin: 0;">+<span id="LC251" class="line" lang="c"> <span class="n" style="color: #333;">css</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">1</span><span class="p">;</span></span>
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179
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<td class="diff-line-num new_line" data-linenumber="252" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
252
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<pre style="margin: 0;"> <span id="LC252" class="line" lang="c"> <span class="p">}</span></span>
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180
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253
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<pre style="margin: 0;"> <span id="LC253" class="line" lang="c"> <span class="p">}</span></span>
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181
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254
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<pre style="margin: 0;"> <span id="LC254" class="line" lang="c"> <span class="k" style="font-weight: 600;">else</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="199" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="272" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -199,7 +272,8 @@ int main(int argc, char *argv[])</td>
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199
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272
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<pre style="margin: 0;"> <span id="LC272" class="line" lang="c"> <span class="n" style="color: #333;">nblock</span> <span class="o" style="font-weight: 600;">+=</span> <span class="mi" style="color: #099;">1</span><span class="p">;</span></span>
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200
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273
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<pre style="margin: 0;"> <span id="LC273" class="line" lang="c"> <span class="p">}</span></span>
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201
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<td class="diff-line-num new_line" data-linenumber="274" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
274
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<pre style="margin: 0;"> <span id="LC274" class="line" lang="c"> <span class="n" style="color: #333;">fno</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">fileno</span><span class="p">(</span><span class="n" style="color: #333;">dbfile</span><span class="p">);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="202" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
202
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<pre style="margin: 0;">-<span id="LC202" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">ftruncate</span><span class="p">(</span><span class="n" style="color: #333;">fno</span><span class="p">,</span><span class="n" style="color: #333;">FTELLO</span><span class="p">(</span><span class="n" style="color: #333;">dbfile</span><span class="p">))</span> <span class="o" style="font-weight: 600;"><</span> <span class="mi" style="color: #099;">0</span><span class="p">)</span></span>
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<td class="diff-line-num new old_line" data-linenumber="203" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="275" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
275
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<pre style="margin: 0;">+<span id="LC275" class="line" lang="c"> <span class="n" style="color: #333;">FTELLO</span><span class="p">(</span><span class="n" style="color: #333;">upos</span><span class="p">,</span><span class="n" style="color: #333;">dbfile</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="276" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
276
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<pre style="margin: 0;">+<span id="LC276" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">ftruncate</span><span class="p">(</span><span class="n" style="color: #333;">fno</span><span class="p">,</span><span class="n" style="color: #333;">upos</span><span class="p">)</span> <span class="o" style="font-weight: 600;"><</span> <span class="mi" style="color: #099;">0</span><span class="p">)</span></span>
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203
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277
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<pre style="margin: 0;"> <span id="LC277" class="line" lang="c"> <span class="n" style="color: #333;">SYSTEM_WRITE_ERROR</span></span>
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204
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<td class="diff-line-num new_line" data-linenumber="278" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
278
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<pre style="margin: 0;"> <span id="LC278" class="line" lang="c"></span>
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<td class="diff-line-num old_line" data-linenumber="205" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
205
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<td class="diff-line-num new_line" data-linenumber="279" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
279
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<pre style="margin: 0;"> <span id="LC279" class="line" lang="c"> <span class="n" style="color: #333;">FSEEKO</span><span class="p">(</span><span class="n" style="color: #333;">dbfile</span><span class="p">,</span><span class="n" style="color: #333;">dbpos</span><span class="p">,</span><span class="n" style="color: #333;">SEEK_SET</span><span class="p">)</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="208" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="282" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -208,9 +282,13 @@ int main(int argc, char *argv[])</td>
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208
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<td class="diff-line-num new_line" data-linenumber="282" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
282
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<pre style="margin: 0;"> <span id="LC282" class="line" lang="c"> <span class="n" style="color: #333;">dbs</span><span class="p">.</span><span class="n" style="color: #333;">cutoff</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">CUTOFF</span><span class="p">;</span></span>
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209
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<td class="diff-line-num new_line" data-linenumber="283" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
283
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<pre style="margin: 0;"> <span id="LC283" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">ALL</span><span class="p">)</span></span>
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<td class="diff-line-num old_line" data-linenumber="210" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
210
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<td class="diff-line-num new_line" data-linenumber="284" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
284
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<pre style="margin: 0;"> <span id="LC284" class="line" lang="c"> <span class="n" style="color: #333;">dbs</span><span class="p">.</span><span class="n" style="color: #333;">allarr</span> <span class="o" style="font-weight: 600;">|=</span> <span class="n" style="color: #333;">DB_ALL</span><span class="p">;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="285" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
285
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<pre style="margin: 0;">+<span id="LC285" class="line" lang="c"> <span class="k" style="font-weight: 600;">else</span></span>
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<td class="diff-line-num new old_line" data-linenumber="211" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="286" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
286
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<pre style="margin: 0;">+<span id="LC286" class="line" lang="c"> <span class="n" style="color: #333;">dbs</span><span class="p">.</span><span class="n" style="color: #333;">allarr</span> <span class="o" style="font-weight: 600;">&=</span> <span class="o" style="font-weight: 600;">~</span><span class="n" style="color: #333;">DB_ALL</span><span class="p">;</span></span>
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<td class="diff-line-num old_line" data-linenumber="211" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
211
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<td class="diff-line-num new_line" data-linenumber="287" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
287
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<pre style="margin: 0;"> <span id="LC287" class="line" lang="c"> <span class="n" style="color: #333;">dbs</span><span class="p">.</span><span class="n" style="color: #333;">treads</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">treads</span><span class="p">;</span></span>
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<td class="diff-line-num old_line" data-linenumber="212" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
212
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<td class="diff-line-num new_line" data-linenumber="288" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
288
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<pre style="margin: 0;"> <span id="LC288" class="line" lang="c"> <span class="n" style="color: #333;">FSEEKO</span><span class="p">(</span><span class="n" style="color: #333;">ixfile</span><span class="p">,</span><span class="mi" style="color: #099;">0</span><span class="p">,</span><span class="n" style="color: #333;">SEEK_SET</span><span class="p">)</span></span>
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<td class="diff-line-num old_line" data-linenumber="213" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
213
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<td class="diff-line-num new_line" data-linenumber="289" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
289
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<pre style="margin: 0;"> <span id="LC289" class="line" lang="c"> <span class="n" style="color: #333;">FWRITE</span><span class="p">(</span><span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">dbs</span><span class="p">,</span><span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="n" style="color: #333;">DAZZ_DB</span><span class="p">),</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="n" style="color: #333;">ixfile</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="290" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
290
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<pre style="margin: 0;">+<span id="LC290" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">SELECT</span> <span class="o" style="font-weight: 600;">>=</span> <span class="mi" style="color: #099;">0</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC291" class="line" lang="c"> <span class="n" style="color: #333;">FWRITE</span><span class="p">(</span><span class="n" style="color: #333;">reads</span><span class="p">,</span><span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="n" style="color: #333;">DAZZ_READ</span><span class="p">),</span><span class="n" style="color: #333;">nreads</span><span class="p">,</span><span class="n" style="color: #333;">ixfile</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC292" class="line" lang="c"> <span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC293" class="line" lang="c"></span>
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<pre style="margin: 0;"> <span id="LC294" class="line" lang="c"> <span class="n" style="color: #333;">FCLOSE</span><span class="p">(</span><span class="n" style="color: #333;">ixfile</span><span class="p">)</span></span>
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<a href="https://salsa.debian.org/med-team/dazzdb/commit/d9350062a729e5294b2ca4cd106570d00dfe4719#9b8d8540f0e007b90a606e9d2ce3f99684b63b9d"><strong>DBtrim.c</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -22,7 +22,15 @@</td>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#define PATHSEP "/"</span></span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="c"></span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="c"><span class="k" style="font-weight: 600;">static</span> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">Usage</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"[-af] [-x<int>] <path:db|dam>"</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="c"><span class="k" style="font-weight: 600;">static</span> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">Usage</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"[-aflm] [-x<int>] <path:db|dam>"</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="c"></span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="c"><span class="k" style="font-weight: 600;">static</span> <span class="n" style="color: #333;">DAZZ_READ</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">reads</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="c"></span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="c"><span class="k" style="font-weight: 600;">static</span> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="nf" style="color: #900; font-weight: 600;">MSORT</span><span class="p">(</span><span class="k" style="font-weight: 600;">const</span> <span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">l</span><span class="p">,</span> <span class="k" style="font-weight: 600;">const</span> <span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">r</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="c"><span class="p">{</span> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">x</span> <span class="o" style="font-weight: 600;">=</span> <span class="o" style="font-weight: 600;">*</span><span class="p">((</span><span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="o" style="font-weight: 600;">*</span><span class="p">)</span> <span class="n" style="color: #333;">l</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">y</span> <span class="o" style="font-weight: 600;">=</span> <span class="o" style="font-weight: 600;">*</span><span class="p">((</span><span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="o" style="font-weight: 600;">*</span><span class="p">)</span> <span class="n" style="color: #333;">r</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="c"> <span class="k" style="font-weight: 600;">return</span> <span class="p">(</span><span class="n" style="color: #333;">reads</span><span class="p">[</span><span class="n" style="color: #333;">x</span><span class="p">].</span><span class="n" style="color: #333;">rlen</span> <span class="o" style="font-weight: 600;">-</span> <span class="n" style="color: #333;">reads</span><span class="p">[</span><span class="n" style="color: #333;">y</span><span class="p">].</span><span class="n" style="color: #333;">rlen</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="c"><span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="c"></span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="c"><span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="nf" style="color: #900; font-weight: 600;">main</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">argc</span><span class="p">,</span> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">argv</span><span class="p">[])</span></span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="c"><span class="p">{</span> <span class="n" style="color: #333;">DAZZ_DB</span> <span class="n" style="color: #333;">db</span><span class="p">,</span> <span class="n" style="color: #333;">dbs</span><span class="p">;</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -31,10 +39,15 @@ int main(int argc, char *argv[])</td>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">dbfile_name</span><span class="p">,</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">ixfile_name</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">nblocks</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">status</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">nreads</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="c"></span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">medmax</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">msort</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="c"></span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">FORCE</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">ALL</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">CUTOFF</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">SELECT</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="c"></span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="c"> <span class="p">{</span> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">i</span><span class="p">,</span> <span class="n" style="color: #333;">j</span><span class="p">,</span> <span class="n" style="color: #333;">k</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">flags</span><span class="p">[</span><span class="mi" style="color: #099;">128</span><span class="p">];</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -42,6 +55,7 @@ int main(int argc, char *argv[])</td>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="c"></span>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="c"> <span class="n" style="color: #333;">ARG_INIT</span><span class="p">(</span><span class="s" style="color: #d14;">"DBtrim"</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="c"></span>
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="c"> <span class="n" style="color: #333;">SELECT</span> <span class="o" style="font-weight: 600;">=</span> <span class="o" style="font-weight: 600;">-</span><span class="mi" style="color: #099;">1</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="c"> <span class="n" style="color: #333;">CUTOFF</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="c"></span>
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="c"> <span class="n" style="color: #333;">j</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">1</span><span class="p">;</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="49" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="63" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -49,7 +63,7 @@ int main(int argc, char *argv[])</td>
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49
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63
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">argv</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">][</span><span class="mi" style="color: #099;">0</span><span class="p">]</span> <span class="o" style="font-weight: 600;">==</span> <span class="sc" style="color: #d14;">'-'</span><span class="p">)</span></span>
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50
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64
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="c"> <span class="k" style="font-weight: 600;">switch</span> <span class="p">(</span><span class="n" style="color: #333;">argv</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">][</span><span class="mi" style="color: #099;">1</span><span class="p">])</span></span>
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51
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65
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="c"> <span class="p">{</span> <span class="k" style="font-weight: 600;">default</span><span class="o" style="font-weight: 600;">:</span></span>
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52
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<pre style="margin: 0;">-<span id="LC52" class="line" lang="c"> <span class="n" style="color: #333;">ARG_FLAGS</span><span class="p">(</span><span class="s" style="color: #d14;">"af"</span><span class="p">)</span></span>
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66
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="c"> <span class="n" style="color: #333;">ARG_FLAGS</span><span class="p">(</span><span class="s" style="color: #d14;">"af<span class="idiff left right">lm</span>"</span><span class="p">)</span></span>
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53
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67
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<pre style="margin: 0;"> <span id="LC67" class="line" lang="c"> <span class="k" style="font-weight: 600;">break</span><span class="p">;</span></span>
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54
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<td class="diff-line-num new_line" data-linenumber="68" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
68
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<pre style="margin: 0;"> <span id="LC68" class="line" lang="c"> <span class="k" style="font-weight: 600;">case</span> <span class="sc" style="color: #d14;">'x'</span><span class="p">:</span></span>
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55
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69
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<pre style="margin: 0;"> <span id="LC69" class="line" lang="c"> <span class="n" style="color: #333;">ARG_NON_NEGATIVE</span><span class="p">(</span><span class="n" style="color: #333;">CUTOFF</span><span class="p">,</span><span class="s" style="color: #d14;">"Min read length cutoff"</span><span class="p">)</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="62" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="76" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -62,12 +76,25 @@ int main(int argc, char *argv[])</td>
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62
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76
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<pre style="margin: 0;"> <span id="LC76" class="line" lang="c"> <span class="n" style="color: #333;">ALL</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">flags</span><span class="p">[</span><span class="sc" style="color: #d14;">'a'</span><span class="p">];</span></span>
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63
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77
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<pre style="margin: 0;"> <span id="LC77" class="line" lang="c"> <span class="n" style="color: #333;">FORCE</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">flags</span><span class="p">[</span><span class="sc" style="color: #d14;">'f'</span><span class="p">];</span></span>
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64
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78
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<pre style="margin: 0;"> <span id="LC78" class="line" lang="c"></span>
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79
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<pre style="margin: 0;">+<span id="LC79" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">flags</span><span class="p">[</span><span class="sc" style="color: #d14;">'l'</span><span class="p">])</span></span>
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80
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<pre style="margin: 0;">+<span id="LC80" class="line" lang="c"> <span class="p">{</span> <span class="n" style="color: #333;">SELECT</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="81" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
81
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<pre style="margin: 0;">+<span id="LC81" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">flags</span><span class="p">[</span><span class="sc" style="color: #d14;">'m'</span><span class="p">])</span></span>
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82
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<pre style="margin: 0;">+<span id="LC82" class="line" lang="c"> <span class="p">{</span> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stderr</span><span class="p">,</span><span class="s" style="color: #d14;">"%s: Cannot set both -l and -m, mutually exclusive</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">,</span><span class="n" style="color: #333;">Prog_Name</span><span class="p">);</span></span>
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83
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="c"> <span class="n" style="color: #333;">exit</span> <span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">);</span></span>
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84
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<pre style="margin: 0;">+<span id="LC84" class="line" lang="c"> <span class="p">}</span></span>
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85
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<pre style="margin: 0;">+<span id="LC85" class="line" lang="c"> <span class="p">}</span></span>
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<td class="diff-line-num new new_line" data-linenumber="86" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
86
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<pre style="margin: 0;">+<span id="LC86" class="line" lang="c"> <span class="k" style="font-weight: 600;">else</span> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">flags</span><span class="p">[</span><span class="sc" style="color: #d14;">'m'</span><span class="p">])</span></span>
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87
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<pre style="margin: 0;">+<span id="LC87" class="line" lang="c"> <span class="n" style="color: #333;">SELECT</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">1</span><span class="p">;</span></span>
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88
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<pre style="margin: 0;">+<span id="LC88" class="line" lang="c"></span>
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65
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<td class="diff-line-num new_line" data-linenumber="89" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
89
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<pre style="margin: 0;"> <span id="LC89" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">argc</span> <span class="o" style="font-weight: 600;">!=</span> <span class="mi" style="color: #099;">2</span><span class="p">)</span></span>
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66
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<td class="diff-line-num new_line" data-linenumber="90" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
90
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<pre style="margin: 0;"> <span id="LC90" class="line" lang="c"> <span class="p">{</span> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stderr</span><span class="p">,</span><span class="s" style="color: #d14;">"Usage: %s %s</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">,</span><span class="n" style="color: #333;">Prog_Name</span><span class="p">,</span><span class="n" style="color: #333;">Usage</span><span class="p">);</span></span>
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67
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91
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<pre style="margin: 0;"> <span id="LC91" class="line" lang="c"> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stderr</span><span class="p">,</span><span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>
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<td class="diff-line-num old_line" data-linenumber="68" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
68
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<td class="diff-line-num new_line" data-linenumber="92" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
92
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<pre style="margin: 0;"> <span id="LC92" class="line" lang="c"> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stderr</span><span class="p">,</span><span class="s" style="color: #d14;">" -x: Trimmed DB has reads >= this threshold.</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>
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<td class="diff-line-num old_line" data-linenumber="69" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
69
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<td class="diff-line-num new_line" data-linenumber="93" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
93
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<pre style="margin: 0;"> <span id="LC93" class="line" lang="c"> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stderr</span><span class="p">,</span><span class="s" style="color: #d14;">" -a: Trimmed DB contains all reads from a well (not just longest).</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>
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<td class="diff-line-num old_line" data-linenumber="70" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
70
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<td class="diff-line-num new_line" data-linenumber="94" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
94
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<pre style="margin: 0;"> <span id="LC94" class="line" lang="c"> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stderr</span><span class="p">,</span><span class="s" style="color: #d14;">" -f: Force the new trim setting even if already set.</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="95" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
95
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<pre style="margin: 0;">+<span id="LC95" class="line" lang="c"> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stderr</span><span class="p">,</span><span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="96" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
96
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<pre style="margin: 0;">+<span id="LC96" class="line" lang="c"> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stderr</span><span class="p">,</span><span class="s" style="color: #d14;">" -l: Set primary read for a well to be the longest.</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="97" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
97
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<pre style="margin: 0;">+<span id="LC97" class="line" lang="c"> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stderr</span><span class="p">,</span><span class="s" style="color: #d14;">" -m: Set primary read for a well to be the median.</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>
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71
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<td class="diff-line-num new_line" data-linenumber="98" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
98
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<pre style="margin: 0;"> <span id="LC98" class="line" lang="c"> <span class="n" style="color: #333;">exit</span> <span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">);</span></span>
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72
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<td class="diff-line-num new_line" data-linenumber="99" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
99
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<pre style="margin: 0;"> <span id="LC99" class="line" lang="c"> <span class="p">}</span></span>
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<td class="diff-line-num old_line" data-linenumber="73" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
73
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<td class="diff-line-num new_line" data-linenumber="100" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
100
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<pre style="margin: 0;"> <span id="LC100" class="line" lang="c"> <span class="p">}</span></span>
</pre>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="81" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="108" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -81,6 +108,8 @@ int main(int argc, char *argv[])</td>
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81
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<td class="diff-line-num new_line" data-linenumber="108" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
108
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<pre style="margin: 0;"> <span id="LC108" class="line" lang="c"> <span class="p">{</span> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stderr</span><span class="p">,</span><span class="s" style="color: #d14;">"%s: Cannot be called on a block: %s</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">,</span><span class="n" style="color: #333;">Prog_Name</span><span class="p">,</span><span class="n" style="color: #333;">argv</span><span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">]);</span></span>
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<td class="diff-line-num old_line" data-linenumber="82" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
82
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<td class="diff-line-num new_line" data-linenumber="109" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
109
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<pre style="margin: 0;"> <span id="LC109" class="line" lang="c"> <span class="n" style="color: #333;">exit</span> <span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">);</span></span>
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<td class="diff-line-num old_line" data-linenumber="83" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
83
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<td class="diff-line-num new_line" data-linenumber="110" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
110
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<pre style="margin: 0;"> <span id="LC110" class="line" lang="c"> <span class="p">}</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="84" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="111" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
111
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<pre style="margin: 0;">+<span id="LC111" class="line" lang="c"> <span class="n" style="color: #333;">reads</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">db</span><span class="p">.</span><span class="n" style="color: #333;">reads</span><span class="p">;</span></span>
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<td class="diff-line-num new old_line" data-linenumber="84" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="112" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
112
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<pre style="margin: 0;">+<span id="LC112" class="line" lang="c"> <span class="n" style="color: #333;">nreads</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">db</span><span class="p">.</span><span class="n" style="color: #333;">ureads</span><span class="p">;</span></span>
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<td class="diff-line-num old_line" data-linenumber="84" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
84
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<td class="diff-line-num new_line" data-linenumber="113" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
113
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<pre style="margin: 0;"> <span id="LC113" class="line" lang="c"></span>
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<td class="diff-line-num old_line" data-linenumber="85" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
85
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<td class="diff-line-num new_line" data-linenumber="114" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
114
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<pre style="margin: 0;"> <span id="LC114" class="line" lang="c"> <span class="p">{</span> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">pwd</span><span class="p">,</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">root</span><span class="p">;</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="86" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
86
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115
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<pre style="margin: 0;"> <span id="LC115" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="n" style="color: #333;">buffer</span><span class="p">[</span><span class="mi" style="color: #099;">2</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">MAX_NAME</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">100</span><span class="p">];</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -135,12 +164,53 @@ int main(int argc, char *argv[])</td>
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135
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164
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<pre style="margin: 0;"> <span id="LC164" class="line" lang="c"></span>
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136
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165
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<pre style="margin: 0;"> <span id="LC165" class="line" lang="c"> <span class="n" style="color: #333;">FSCANF</span><span class="p">(</span><span class="n" style="color: #333;">dbfile</span><span class="p">,</span><span class="n" style="color: #333;">DB_NBLOCK</span><span class="p">,</span><span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">nblocks</span><span class="p">)</span></span>
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137
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166
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<pre style="margin: 0;"> <span id="LC166" class="line" lang="c"></span>
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138
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<pre style="margin: 0;">-<span id="LC138" class="line" lang="c"> <span class="n" style="color: #333;"><span class="idiff left">dbpos</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">FTELLO</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">dbfile</span></span><span class="p"><span class="idiff right">);</span></span></span>
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167
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<pre style="margin: 0;">+<span id="LC167" class="line" lang="c"> <span class="n" style="color: #333;"><span class="idiff left">FTELLO</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">dbpos</span></span><span class="p"><span class="idiff">,</span></span><span class="n" style="color: #333;"><span class="idiff">dbfile</span></span><span class="p"><span class="idiff right">)</span></span></span>
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139
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168
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<pre style="margin: 0;"> <span id="LC168" class="line" lang="c"> <span class="n" style="color: #333;">FSCANF</span><span class="p">(</span><span class="n" style="color: #333;">dbfile</span><span class="p">,</span><span class="n" style="color: #333;">DB_PARAMS</span><span class="p">,</span><span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">size</span><span class="p">,</span><span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">cutoff</span><span class="p">,</span><span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">all</span><span class="p">)</span></span>
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140
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169
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<pre style="margin: 0;"> <span id="LC169" class="line" lang="c"> <span class="n" style="color: #333;">FSEEKO</span><span class="p">(</span><span class="n" style="color: #333;">dbfile</span><span class="p">,</span><span class="n" style="color: #333;">dbpos</span><span class="p">,</span><span class="n" style="color: #333;">SEEK_SET</span><span class="p">)</span></span>
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141
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170
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<pre style="margin: 0;"> <span id="LC170" class="line" lang="c"> <span class="n" style="color: #333;">FPRINTF</span><span class="p">(</span><span class="n" style="color: #333;">dbfile</span><span class="p">,</span><span class="n" style="color: #333;">DB_PARAMS</span><span class="p">,</span><span class="n" style="color: #333;">size</span><span class="p">,</span><span class="n" style="color: #333;">CUTOFF</span><span class="p">,</span><span class="n" style="color: #333;">ALL</span><span class="p">)</span></span>
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142
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171
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<pre style="margin: 0;"> <span id="LC171" class="line" lang="c"> <span class="p">}</span></span>
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143
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172
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<pre style="margin: 0;"> <span id="LC172" class="line" lang="c"></span>
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173
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<pre style="margin: 0;">+<span id="LC173" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">SELECT</span> <span class="o" style="font-weight: 600;">>=</span> <span class="mi" style="color: #099;">0</span><span class="p">)</span></span>
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174
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<pre style="margin: 0;">+<span id="LC174" class="line" lang="c"> <span class="p">{</span> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">i</span><span class="p">,</span> <span class="n" style="color: #333;">j</span><span class="p">,</span> <span class="n" style="color: #333;">k</span><span class="p">,</span> <span class="n" style="color: #333;">h</span><span class="p">;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="175" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
175
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<pre style="margin: 0;">+<span id="LC175" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">off</span><span class="p">;</span></span>
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176
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<pre style="margin: 0;">+<span id="LC176" class="line" lang="c"></span>
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<td class="diff-line-num new new_line" data-linenumber="177" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
177
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<pre style="margin: 0;">+<span id="LC177" class="line" lang="c"> <span class="n" style="color: #333;">off</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="o" style="font-weight: 600;">~</span> <span class="n" style="color: #333;">DB_BEST</span><span class="p">);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="178" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
178
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<pre style="margin: 0;">+<span id="LC178" class="line" lang="c"></span>
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<td class="diff-line-num new new_line" data-linenumber="179" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
179
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<pre style="margin: 0;">+<span id="LC179" class="line" lang="c"> <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span><span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">nreads</span><span class="p">;</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">j</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="180" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
180
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<pre style="margin: 0;">+<span id="LC180" class="line" lang="c"> <span class="p">{</span> <span class="n" style="color: #333;">j</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">1</span><span class="p">;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="181" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
181
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<pre style="margin: 0;">+<span id="LC181" class="line" lang="c"> <span class="n" style="color: #333;">reads</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">].</span><span class="n" style="color: #333;">flags</span> <span class="o" style="font-weight: 600;">&=</span> <span class="n" style="color: #333;">off</span><span class="p">;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="182" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
182
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<pre style="margin: 0;">+<span id="LC182" class="line" lang="c"> <span class="k" style="font-weight: 600;">while</span> <span class="p">((</span><span class="n" style="color: #333;">reads</span><span class="p">[</span><span class="n" style="color: #333;">j</span><span class="p">].</span><span class="n" style="color: #333;">flags</span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">DB_CSS</span><span class="p">)</span> <span class="o" style="font-weight: 600;">!=</span> <span class="mi" style="color: #099;">0</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="183" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
183
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<pre style="margin: 0;">+<span id="LC183" class="line" lang="c"> <span class="n" style="color: #333;">reads</span><span class="p">[</span><span class="n" style="color: #333;">j</span><span class="o" style="font-weight: 600;">++</span><span class="p">].</span><span class="n" style="color: #333;">flags</span> <span class="o" style="font-weight: 600;">&=</span> <span class="n" style="color: #333;">off</span><span class="p">;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="184" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
184
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<pre style="margin: 0;">+<span id="LC184" class="line" lang="c"></span>
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<td class="diff-line-num new new_line" data-linenumber="185" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
185
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<pre style="margin: 0;">+<span id="LC185" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">j</span><span class="o" style="font-weight: 600;">-</span><span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;"><=</span> <span class="mi" style="color: #099;">1</span><span class="p">)</span></span>
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<td class="diff-line-num new old_line" data-linenumber="144" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="186" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
186
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<pre style="margin: 0;">+<span id="LC186" class="line" lang="c"> <span class="p">{</span> <span class="n" style="color: #333;">reads</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">].</span><span class="n" style="color: #333;">flags</span> <span class="o" style="font-weight: 600;">|=</span> <span class="n" style="color: #333;">DB_BEST</span><span class="p">;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="187" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
187
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<pre style="margin: 0;">+<span id="LC187" class="line" lang="c"> <span class="k" style="font-weight: 600;">continue</span><span class="p">;</span></span>
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188
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<pre style="margin: 0;">+<span id="LC188" class="line" lang="c"> <span class="p">}</span></span>
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<td class="diff-line-num new old_line" data-linenumber="144" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="189" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
189
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<pre style="margin: 0;">+<span id="LC189" class="line" lang="c"></span>
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<td class="diff-line-num new old_line" data-linenumber="144" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="190" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
190
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<pre style="margin: 0;">+<span id="LC190" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">SELECT</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">0</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="191" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
191
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<pre style="margin: 0;">+<span id="LC191" class="line" lang="c"> <span class="p">{</span> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">mlen</span><span class="p">;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="192" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
192
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<pre style="margin: 0;">+<span id="LC192" class="line" lang="c"></span>
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<td class="diff-line-num new old_line" data-linenumber="144" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="193" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
193
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<pre style="margin: 0;">+<span id="LC193" class="line" lang="c"> <span class="n" style="color: #333;">mlen</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">reads</span><span class="p">[</span><span class="n" style="color: #333;">h</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">i</span><span class="p">].</span><span class="n" style="color: #333;">rlen</span><span class="p">;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
194
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<pre style="margin: 0;">+<span id="LC194" class="line" lang="c"> <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span><span class="n" style="color: #333;">k</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">1</span><span class="p">;</span> <span class="n" style="color: #333;">k</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">j</span><span class="p">;</span> <span class="n" style="color: #333;">k</span><span class="o" style="font-weight: 600;">++</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="195" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
195
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<pre style="margin: 0;">+<span id="LC195" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">mlen</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">reads</span><span class="p">[</span><span class="n" style="color: #333;">k</span><span class="p">].</span><span class="n" style="color: #333;">rlen</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="196" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
196
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<pre style="margin: 0;">+<span id="LC196" class="line" lang="c"> <span class="n" style="color: #333;">mlen</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">reads</span><span class="p">[</span><span class="n" style="color: #333;">h</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">k</span><span class="p">].</span><span class="n" style="color: #333;">rlen</span><span class="p">;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="197" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
197
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<pre style="margin: 0;">+<span id="LC197" class="line" lang="c"> <span class="p">}</span></span>
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<td class="diff-line-num new new_line" data-linenumber="198" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
198
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<pre style="margin: 0;">+<span id="LC198" class="line" lang="c"> <span class="k" style="font-weight: 600;">else</span></span>
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<td class="diff-line-num new new_line" data-linenumber="199" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
199
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<pre style="margin: 0;">+<span id="LC199" class="line" lang="c"> <span class="p">{</span> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">j</span><span class="o" style="font-weight: 600;">-</span><span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;">></span> <span class="n" style="color: #333;">medmax</span><span class="p">)</span></span>
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<td class="diff-line-num new old_line" data-linenumber="144" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="200" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
200
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<pre style="margin: 0;">+<span id="LC200" class="line" lang="c"> <span class="p">{</span> <span class="n" style="color: #333;">medmax</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">1</span><span class="p">.</span><span class="mi" style="color: #099;">2</span><span class="o" style="font-weight: 600;">*</span><span class="p">(</span><span class="n" style="color: #333;">j</span><span class="o" style="font-weight: 600;">-</span><span class="n" style="color: #333;">i</span><span class="p">)</span> <span class="o" style="font-weight: 600;">+</span> <span class="mi" style="color: #099;">1000</span><span class="p">;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="201" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
201
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<pre style="margin: 0;">+<span id="LC201" class="line" lang="c"> <span class="n" style="color: #333;">msort</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="o" style="font-weight: 600;">*</span><span class="p">)</span> <span class="n" style="color: #333;">Realloc</span><span class="p">(</span><span class="n" style="color: #333;">msort</span><span class="p">,</span><span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">int</span><span class="p">)</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">medmax</span><span class="p">,</span><span class="s" style="color: #d14;">"Allocating Median Array"</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC202" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">msort</span> <span class="o" style="font-weight: 600;">==</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">)</span></span>
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203
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<pre style="margin: 0;">+<span id="LC203" class="line" lang="c"> <span class="n" style="color: #333;">exit</span> <span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">);</span></span>
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204
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<pre style="margin: 0;">+<span id="LC204" class="line" lang="c"> <span class="p">}</span></span>
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205
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<pre style="margin: 0;">+<span id="LC205" class="line" lang="c"> <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span><span class="n" style="color: #333;">k</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">i</span><span class="p">;</span> <span class="n" style="color: #333;">k</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">j</span><span class="p">;</span> <span class="n" style="color: #333;">k</span><span class="o" style="font-weight: 600;">++</span><span class="p">)</span></span>
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206
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<pre style="margin: 0;">+<span id="LC206" class="line" lang="c"> <span class="n" style="color: #333;">msort</span><span class="p">[</span><span class="n" style="color: #333;">k</span><span class="o" style="font-weight: 600;">-</span><span class="n" style="color: #333;">i</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">k</span><span class="p">;</span></span>
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207
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<pre style="margin: 0;">+<span id="LC207" class="line" lang="c"> <span class="n" style="color: #333;">qsort</span><span class="p">(</span><span class="n" style="color: #333;">msort</span><span class="p">,</span><span class="n" style="color: #333;">j</span><span class="o" style="font-weight: 600;">-</span><span class="n" style="color: #333;">i</span><span class="p">,</span><span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">int</span><span class="p">),</span><span class="n" style="color: #333;">MSORT</span><span class="p">);</span></span>
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208
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<pre style="margin: 0;">+<span id="LC208" class="line" lang="c"> <span class="n" style="color: #333;">h</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">msort</span><span class="p">[(</span><span class="n" style="color: #333;">j</span><span class="o" style="font-weight: 600;">-</span><span class="n" style="color: #333;">i</span><span class="p">)</span><span class="o" style="font-weight: 600;">/</span><span class="mi" style="color: #099;">2</span><span class="p">];</span></span>
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209
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<pre style="margin: 0;">+<span id="LC209" class="line" lang="c"> <span class="p">}</span></span>
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210
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<pre style="margin: 0;">+<span id="LC210" class="line" lang="c"> <span class="n" style="color: #333;">reads</span><span class="p">[</span><span class="n" style="color: #333;">h</span><span class="p">].</span><span class="n" style="color: #333;">flags</span> <span class="o" style="font-weight: 600;">|=</span> <span class="n" style="color: #333;">DB_BEST</span><span class="p">;</span></span>
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211
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<pre style="margin: 0;">+<span id="LC211" class="line" lang="c"> <span class="p">}</span></span>
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212
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<pre style="margin: 0;">+<span id="LC212" class="line" lang="c"> <span class="p">}</span></span>
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213
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<pre style="margin: 0;">+<span id="LC213" class="line" lang="c"></span>
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144
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214
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<pre style="margin: 0;"> <span id="LC214" class="line" lang="c"> <span class="p">{</span> <span class="n" style="color: #333;">DAZZ_READ</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">reads</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">db</span><span class="p">.</span><span class="n" style="color: #333;">reads</span><span class="p">;</span></span>
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145
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215
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<pre style="margin: 0;"> <span id="LC215" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">uread</span><span class="p">,</span> <span class="n" style="color: #333;">tread</span><span class="p">;</span></span>
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146
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216
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<pre style="margin: 0;"> <span id="LC216" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">rlen</span><span class="p">;</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="150" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="220" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -150,7 +220,7 @@ int main(int argc, char *argv[])</td>
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150
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220
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<pre style="margin: 0;"> <span id="LC220" class="line" lang="c"> <span class="n" style="color: #333;">t</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span></span>
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151
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221
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<pre style="margin: 0;"> <span id="LC221" class="line" lang="c"> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">dbfile</span><span class="p">,</span><span class="n" style="color: #333;">DB_BDATA</span><span class="p">,</span><span class="mi" style="color: #099;">0</span><span class="p">,</span><span class="mi" style="color: #099;">0</span><span class="p">);</span></span>
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152
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222
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<pre style="margin: 0;"> <span id="LC222" class="line" lang="c"> <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span><span class="n" style="color: #333;">b</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">b</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">nblocks</span><span class="p">;</span> <span class="n" style="color: #333;">b</span><span class="o" style="font-weight: 600;">++</span><span class="p">)</span></span>
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153
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<pre style="margin: 0;">-<span id="LC153" class="line" lang="c"> <span class="p">{</span> <span class="n" style="color: #333;"><span class="idiff left">dbpos</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">FTELLO</span></span><span class="p"><span class="idiff right">(</span></span><span class="n" style="color: #333;">dbfile</span><span class="p">);</span></span>
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223
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<pre style="margin: 0;">+<span id="LC223" class="line" lang="c"> <span class="p">{</span> <span class="n" style="color: #333;"><span class="idiff left">FTELLO</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">dbpos</span></span><span class="p"><span class="idiff right">,</span></span><span class="n" style="color: #333;">dbfile</span><span class="p">);</span></span>
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154
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224
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<pre style="margin: 0;"> <span id="LC224" class="line" lang="c"> <span class="n" style="color: #333;">FSCANF</span><span class="p">(</span><span class="n" style="color: #333;">dbfile</span><span class="p">,</span><span class="n" style="color: #333;">DB_BDATA</span><span class="p">,</span><span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">uread</span><span class="p">,</span><span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">tread</span><span class="p">)</span></span>
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155
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225
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<pre style="margin: 0;"> <span id="LC225" class="line" lang="c"></span>
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156
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226
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<pre style="margin: 0;"> <span id="LC226" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">ALL</span><span class="p">)</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="174" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -174,9 +244,13 @@ int main(int argc, char *argv[])</td>
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174
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244
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<pre style="margin: 0;"> <span id="LC244" class="line" lang="c"> <span class="n" style="color: #333;">dbs</span><span class="p">.</span><span class="n" style="color: #333;">cutoff</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">CUTOFF</span><span class="p">;</span></span>
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175
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<pre style="margin: 0;"> <span id="LC245" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">ALL</span><span class="p">)</span></span>
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176
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246
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<pre style="margin: 0;"> <span id="LC246" class="line" lang="c"> <span class="n" style="color: #333;">dbs</span><span class="p">.</span><span class="n" style="color: #333;">allarr</span> <span class="o" style="font-weight: 600;">|=</span> <span class="n" style="color: #333;">DB_ALL</span><span class="p">;</span></span>
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247
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<pre style="margin: 0;">+<span id="LC247" class="line" lang="c"> <span class="k" style="font-weight: 600;">else</span></span>
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<td class="diff-line-num new new_line" data-linenumber="248" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
248
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<pre style="margin: 0;">+<span id="LC248" class="line" lang="c"> <span class="n" style="color: #333;">dbs</span><span class="p">.</span><span class="n" style="color: #333;">allarr</span> <span class="o" style="font-weight: 600;">&=</span> <span class="o" style="font-weight: 600;">~</span><span class="n" style="color: #333;">DB_ALL</span><span class="p">;</span></span>
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177
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<pre style="margin: 0;"> <span id="LC249" class="line" lang="c"> <span class="n" style="color: #333;">dbs</span><span class="p">.</span><span class="n" style="color: #333;">treads</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">t</span><span class="p">;</span></span>
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178
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<pre style="margin: 0;"> <span id="LC250" class="line" lang="c"> <span class="n" style="color: #333;">FSEEKO</span><span class="p">(</span><span class="n" style="color: #333;">ixfile</span><span class="p">,</span><span class="mi" style="color: #099;">0</span><span class="p">,</span><span class="n" style="color: #333;">SEEK_SET</span><span class="p">)</span></span>
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179
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<pre style="margin: 0;"> <span id="LC251" class="line" lang="c"> <span class="n" style="color: #333;">FWRITE</span><span class="p">(</span><span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">dbs</span><span class="p">,</span><span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="n" style="color: #333;">DAZZ_DB</span><span class="p">),</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="n" style="color: #333;">ixfile</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC252" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">SELECT</span> <span class="o" style="font-weight: 600;">>=</span> <span class="mi" style="color: #099;">0</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC253" class="line" lang="c"> <span class="n" style="color: #333;">FWRITE</span><span class="p">(</span><span class="n" style="color: #333;">reads</span><span class="p">,</span><span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="n" style="color: #333;">DAZZ_READ</span><span class="p">),</span><span class="n" style="color: #333;">nreads</span><span class="p">,</span><span class="n" style="color: #333;">ixfile</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC254" class="line" lang="c"> <span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC255" class="line" lang="c"></span>
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<pre style="margin: 0;"> <span id="LC256" class="line" lang="c"> <span class="n" style="color: #333;">FCLOSE</span><span class="p">(</span><span class="n" style="color: #333;">ixfile</span><span class="p">)</span></span>
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<a href="https://salsa.debian.org/med-team/dazzdb/commit/d9350062a729e5294b2ca4cd106570d00dfe4719#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d"><strong>README.md</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -116,8 +116,9 @@ refer to a database we are referring to either a DB or a DAM.</td>
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<pre style="margin: 0;"> <span id="LC116" class="line" lang="markdown">The command DBsplit sets or resets the current partition for a database which is</span>
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<pre style="margin: 0;"> <span id="LC117" class="line" lang="markdown">determined by 3 parameters: (i) the total number of basepairs to place in each block,</span>
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<pre style="margin: 0;"> <span id="LC118" class="line" lang="markdown">(ii) the minimum read length of reads to include within a block, and (iii) whether or</span>
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<pre style="margin: 0;">-<span id="LC119" class="line" lang="markdown">not to only include the longest read from a given well or all reads from a well (NB:</span>
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<pre style="margin: 0;">-<span id="LC120" class="line" lang="markdown">several reads of the same insert in a given well can be produced by the Pacbio</span>
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<pre style="margin: 0;">+<span id="LC119" class="line" lang="markdown">not to only include the longest (-l) or median (-m) read from a given well or all</span>
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<pre style="margin: 0;">+<span id="LC120" class="line" lang="markdown">reads from a well (-a) (NB: several reads of the same insert in a given well can be</span>
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<pre style="margin: 0;">+<span id="LC121" class="line" lang="markdown">produced by the Pacbio</span>
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<pre style="margin: 0;"> <span id="LC122" class="line" lang="markdown">instrument). Note that the length and uniqueness parameters effectively select a</span>
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<pre style="margin: 0;"> <span id="LC123" class="line" lang="markdown">subset of the reads that contribute to the size of a block. We call this subset the</span>
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<pre style="margin: 0;"> <span id="LC124" class="line" lang="markdown"><span class="ge" style="font-style: italic;">*trimmed*</span> data base. Some commands operate on the entire database, others on the</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="259" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -259,7 +260,7 @@ should be used, and the characters per line, or line width, can be set to any po</td>
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<pre style="margin: 0;"> <span id="LC260" class="line" lang="markdown">value with the -w option.</span>
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<pre style="margin: 0;"> <span id="LC261" class="line" lang="markdown"></span>
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<pre style="margin: 0;"> <span id="LC262" class="line" lang="markdown"><span class="p">```</span></span>
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<pre style="margin: 0;">-<span id="LC262" class="line" lang="markdown"><span class="sb" style="color: #d14;">9. DBsplit [-af] [-x<int>] [-s<double(200.)>] <path:db|dam></span></span>
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<pre style="margin: 0;">+<span id="LC263" class="line" lang="markdown"><span class="sb" style="color: #d14;">9. DBsplit [-af<span class="idiff left right">lm</span>] [-x<int>] [-s<double(200.)>] <path:db|dam></span></span>
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<pre style="margin: 0;"> <span id="LC264" class="line" lang="markdown"><span class="p">```</span></span>
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<pre style="margin: 0;"> <span id="LC265" class="line" lang="markdown"></span>
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<pre style="margin: 0;"> <span id="LC266" class="line" lang="markdown">Divide the database <span class="se" style="color: #d14;">\<</span>path<span class="se" style="color: #d14;">\></span>.db or <span class="se" style="color: #d14;">\<</span>path<span class="se" style="color: #d14;">\></span>.dam conceptually into a series of blocks</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -278,6 +279,12 @@ If the -f option is set, the split is forced regardless of whether or not the DB</td>
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<pre style="margin: 0;"> <span id="LC279" class="line" lang="markdown">question has previously bin split, i.e. one is not interactively asked if they wish</span>
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<pre style="margin: 0;"> <span id="LC280" class="line" lang="markdown">to proceed.</span>
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<pre style="margin: 0;"> <span id="LC281" class="line" lang="markdown"></span>
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<pre style="margin: 0;">+<span id="LC282" class="line" lang="markdown">By default, the primary read for each well consists of the longest subread of the insert</span>
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<pre style="margin: 0;">+<span id="LC283" class="line" lang="markdown">from the well. By setting the -m parameter, the subread of median length becomes the</span>
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<pre style="margin: 0;">+<span id="LC284" class="line" lang="markdown">primary read instead. One can at any later time change this back to the default longest</span>
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<pre style="margin: 0;">+<span id="LC285" class="line" lang="markdown">by splitting again with the -l parameter set. The setting of the primary reads occurs</span>
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<pre style="margin: 0;">+<span id="LC286" class="line" lang="markdown">regardless of whether the -a parameter is set or not.</span>
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<pre style="margin: 0;">+<span id="LC287" class="line" lang="markdown"></span>
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<pre style="margin: 0;"> <span id="LC288" class="line" lang="markdown"><span class="p">```</span></span>
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<pre style="margin: 0;"> <span id="LC289" class="line" lang="markdown"><span class="sb" style="color: #d14;">10. DBtrim [-af] [-x<int>] <path:db|dam></span></span>
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290
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<pre style="margin: 0;"> <span id="LC290" class="line" lang="markdown"><span class="p">```</span></span>
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<a href="https://salsa.debian.org/med-team/dazzdb/commit/d9350062a729e5294b2ca4cd106570d00dfe4719#02afd2c74fd77389e034be8f44a4c80ea7411fa7"><strong>fasta2DAM.c</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="407" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -407,8 +407,12 @@ int main(int argc, char *argv[])</td>
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407
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407
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<pre style="margin: 0;"> <span id="LC407" class="line" lang="c"> <span class="n" style="color: #333;">nline</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">1</span><span class="p">;</span></span>
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408
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408
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<pre style="margin: 0;"> <span id="LC408" class="line" lang="c"> <span class="n" style="color: #333;">eof</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="n" style="color: #333;">fgets</span><span class="p">(</span><span class="n" style="color: #333;">read</span><span class="p">,</span><span class="n" style="color: #333;">MAX_NAME</span><span class="p">,</span><span class="n" style="color: #333;">input</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">);</span></span>
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409
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409
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<pre style="margin: 0;"> <span id="LC409" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">eof</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">strlen</span><span class="p">(</span><span class="n" style="color: #333;">read</span><span class="p">)</span> <span class="o" style="font-weight: 600;"><</span> <span class="mi" style="color: #099;">1</span><span class="p">)</span></span>
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410
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<pre style="margin: 0;">-<span id="LC410" class="line" lang="c"> <span class="p">{</span> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stderr</span><span class="p">,</span><span class="s" style="color: #d14;">"Skipping '%s', file is empty!</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">,</span><span class="n" style="color: #333;">core</span><span class="p">);</span></span>
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411
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<pre style="margin: 0;">-<span id="LC411" class="line" lang="c"> <span class="n" style="color: #333;">fclose</span><span class="p">(</span><span class="n" style="color: #333;">input</span><span class="p">);</span></span>
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410
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<pre style="margin: 0;">+<span id="LC410" class="line" lang="c"> <span class="p">{</span> <span class="n" style="color: #333;">fclose</span><span class="p">(</span><span class="n" style="color: #333;">input</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC411" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">PIPE</span> <span class="o" style="font-weight: 600;">!=</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC412" class="line" lang="c"> <span class="p">{</span> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stderr</span><span class="p">,</span><span class="s" style="color: #d14;">"Standard input is empty, terminating!</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC413" class="line" lang="c"> <span class="k" style="font-weight: 600;">break</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC414" class="line" lang="c"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC415" class="line" lang="c"> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stderr</span><span class="p">,</span><span class="s" style="color: #d14;">"Skipping '%s', file is empty!</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">,</span><span class="n" style="color: #333;">core</span><span class="p">);</span></span>
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412
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<pre style="margin: 0;"> <span id="LC416" class="line" lang="c"> <span class="n" style="color: #333;">free</span><span class="p">(</span><span class="n" style="color: #333;">core</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC417" class="line" lang="c"> <span class="k" style="font-weight: 600;">continue</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC418" class="line" lang="c"> <span class="p">}</span></span>
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<a href="https://salsa.debian.org/med-team/dazzdb/commit/d9350062a729e5294b2ca4cd106570d00dfe4719#b5cab68d6eebc9cd68768d35e160e1912182b9b3"><strong>fasta2DB.c</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -390,16 +390,14 @@ int main(int argc, char *argv[])</td>
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<pre style="margin: 0;"> <span id="LC390" class="line" lang="c"></span>
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391
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<pre style="margin: 0;"> <span id="LC391" class="line" lang="c"> <span class="n" style="color: #333;">eof</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="n" style="color: #333;">fgets</span><span class="p">(</span><span class="n" style="color: #333;">read</span><span class="p">,</span><span class="n" style="color: #333;">MAX_NAME</span><span class="p">,</span><span class="n" style="color: #333;">input</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">);</span></span>
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392
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392
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<pre style="margin: 0;"> <span id="LC392" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">eof</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">strlen</span><span class="p">(</span><span class="n" style="color: #333;">read</span><span class="p">)</span> <span class="o" style="font-weight: 600;"><</span> <span class="mi" style="color: #099;">1</span><span class="p">)</span></span>
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393
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<pre style="margin: 0;">-<span id="LC393" class="line" lang="c"> <span class="p">{</span> <span class="n" style="color: #333;">free</span><span class="p">(</span><span class="n" style="color: #333;">core</span><span class="p">);</span></span>
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394
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<pre style="margin: 0;">-<span id="LC394" class="line" lang="c"> <span class="n" style="color: #333;">fclose</span><span class="p">(</span><span class="n" style="color: #333;">input</span><span class="p">);</span></span>
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393
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<pre style="margin: 0;">+<span id="LC393" class="line" lang="c"> <span class="p">{</span> <span class="n" style="color: #333;">fclose</span><span class="p">(</span><span class="n" style="color: #333;">input</span><span class="p">);</span></span>
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395
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394
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<pre style="margin: 0;"> <span id="LC394" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">PIPE</span> <span class="o" style="font-weight: 600;">!=</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">)</span></span>
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396
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395
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<pre style="margin: 0;"> <span id="LC395" class="line" lang="c"> <span class="p">{</span> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stderr</span><span class="p">,</span><span class="s" style="color: #d14;">"Standard input is empty, terminating!</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>
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397
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<pre style="margin: 0;"> <span id="LC396" class="line" lang="c"> <span class="k" style="font-weight: 600;">break</span><span class="p">;</span></span>
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398
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<pre style="margin: 0;"> <span id="LC397" class="line" lang="c"> <span class="p">}</span></span>
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399
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<pre style="margin: 0;">-<span id="LC399" class="line" lang="c"> <span class="k" style="font-weight: 600;">else</span></span>
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<pre style="margin: 0;">-<span id="LC400" class="line" lang="c"> <span class="p">{</span> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stderr</span><span class="p">,</span><span class="s" style="color: #d14;">"Skipping '%s', file is empty!</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">,</span><span class="n" style="color: #333;">core</span><span class="p">);</span></span>
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401
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<pre style="margin: 0;">-<span id="LC401" class="line" lang="c"> <span class="k" style="font-weight: 600;">continue</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC402" class="line" lang="c"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC398" class="line" lang="c"> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stderr</span><span class="p">,</span><span class="s" style="color: #d14;">"Skipping '%s', file is empty!</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">,</span><span class="n" style="color: #333;">core</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC399" class="line" lang="c"> <span class="n" style="color: #333;">free</span><span class="p">(</span><span class="n" style="color: #333;">core</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC400" class="line" lang="c"> <span class="k" style="font-weight: 600;">continue</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC401" class="line" lang="c"> <span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC402" class="line" lang="c"></span>
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<pre style="margin: 0;"> <span id="LC403" class="line" lang="c"> <span class="c1" style="color: #998; font-style: italic;">// Check that core is not too long and name is unique or last source if PIPE'd</span></span>
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<a href="https://salsa.debian.org/med-team/dazzdb/commit/d9350062a729e5294b2ca4cd106570d00dfe4719#93a1d7e5e8c1f300773707aee1e47ebb8d3b20b7"><strong>rangen.c</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -148,6 +148,11 @@ int main(int argc, char *argv[])</td>
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<pre style="margin: 0;"> <span id="LC148" class="line" lang="c"></span>
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149
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<pre style="margin: 0;"> <span id="LC149" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">argc</span> <span class="o" style="font-weight: 600;">!=</span> <span class="mi" style="color: #099;">2</span><span class="p">)</span></span>
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150
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150
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<pre style="margin: 0;"> <span id="LC150" class="line" lang="c"> <span class="p">{</span> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stderr</span><span class="p">,</span><span class="s" style="color: #d14;">"Usage: %s %s</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">,</span><span class="n" style="color: #333;">Prog_Name</span><span class="p">,</span><span class="n" style="color: #333;">Usage</span><span class="p">);</span></span>
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151
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<pre style="margin: 0;">+<span id="LC151" class="line" lang="c"> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stderr</span><span class="p">,</span><span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>
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152
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<pre style="margin: 0;">+<span id="LC152" class="line" lang="c"> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stderr</span><span class="p">,</span><span class="s" style="color: #d14;">" -r: Random number generator seed (default is process id).</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="153" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
153
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<pre style="margin: 0;">+<span id="LC153" class="line" lang="c"> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stderr</span><span class="p">,</span><span class="s" style="color: #d14;">" -b: AT vs GC ratio or bias.</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="154" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
154
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<pre style="margin: 0;">+<span id="LC154" class="line" lang="c"> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stderr</span><span class="p">,</span><span class="s" style="color: #d14;">" -w: Print -w bp per line (default is 80).</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="155" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
155
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<pre style="margin: 0;">+<span id="LC155" class="line" lang="c"> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stderr</span><span class="p">,</span><span class="s" style="color: #d14;">" -U: Output sequence in upper case (default is lower case).</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>
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151
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<td class="diff-line-num new_line" data-linenumber="156" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
156
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<pre style="margin: 0;"> <span id="LC156" class="line" lang="c"> <span class="n" style="color: #333;">exit</span> <span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">);</span></span>
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152
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157
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<pre style="margin: 0;"> <span id="LC157" class="line" lang="c"> <span class="p">}</span></span>
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153
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158
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<pre style="margin: 0;"> <span id="LC158" class="line" lang="c"></span>
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<a href="https://salsa.debian.org/med-team/dazzdb/commit/d9350062a729e5294b2ca4cd106570d00dfe4719#33eb1ec085b7ca1ed510c809278a394776924c69"><strong>simulator.c</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="567" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="567" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -567,6 +567,19 @@ int main(int argc, char *argv[])</td>
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567
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567
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<pre style="margin: 0;"> <span id="LC567" class="line" lang="c"> <span class="p">{</span> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stderr</span><span class="p">,</span><span class="s" style="color: #d14;">"Usage: %s %s</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">,</span><span class="n" style="color: #333;">Prog_Name</span><span class="p">,</span><span class="n" style="color: #333;">Usage</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">]);</span></span>
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568
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<td class="diff-line-num new_line" data-linenumber="568" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
568
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<pre style="margin: 0;"> <span id="LC568" class="line" lang="c"> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stderr</span><span class="p">,</span><span class="s" style="color: #d14;">" %*s %s</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">,(</span><span class="kt" style="color: #458; font-weight: 600;">int</span><span class="p">)</span> <span class="n" style="color: #333;">strlen</span><span class="p">(</span><span class="n" style="color: #333;">Prog_Name</span><span class="p">),</span><span class="s" style="color: #d14;">""</span><span class="p">,</span><span class="n" style="color: #333;">Usage</span><span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">]);</span></span>
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569
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<td class="diff-line-num new_line" data-linenumber="569" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
569
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<pre style="margin: 0;"> <span id="LC569" class="line" lang="c"> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stderr</span><span class="p">,</span><span class="s" style="color: #d14;">" %*s %s</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">,(</span><span class="kt" style="color: #458; font-weight: 600;">int</span><span class="p">)</span> <span class="n" style="color: #333;">strlen</span><span class="p">(</span><span class="n" style="color: #333;">Prog_Name</span><span class="p">),</span><span class="s" style="color: #d14;">""</span><span class="p">,</span><span class="n" style="color: #333;">Usage</span><span class="p">[</span><span class="mi" style="color: #099;">2</span><span class="p">]);</span></span>
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570
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<pre style="margin: 0;">+<span id="LC570" class="line" lang="c"> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stderr</span><span class="p">,</span><span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="571" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
571
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<pre style="margin: 0;">+<span id="LC571" class="line" lang="c"> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stderr</span><span class="p">,</span><span class="s" style="color: #d14;">" -m: average read length (log normal distribution).</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>
</pre>
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572
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<pre style="margin: 0;">+<span id="LC572" class="line" lang="c"> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stderr</span><span class="p">,</span><span class="s" style="color: #d14;">" -s: standard deviation of read lengths (log normal)</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="573" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
573
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<pre style="margin: 0;">+<span id="LC573" class="line" lang="c"> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stderr</span><span class="p">,</span><span class="s" style="color: #d14;">" -x: ignore reads below this length</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="574" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
574
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<pre style="margin: 0;">+<span id="LC574" class="line" lang="c"> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stderr</span><span class="p">,</span><span class="s" style="color: #d14;">" -f: forward/reverse strand sampling fraction</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="575" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
575
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<pre style="margin: 0;">+<span id="LC575" class="line" lang="c"> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stderr</span><span class="p">,</span><span class="s" style="color: #d14;">" -e: error rate</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="570" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="576" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
576
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<pre style="margin: 0;">+<span id="LC576" class="line" lang="c"> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stderr</span><span class="p">,</span><span class="s" style="color: #d14;">" -c: coverage of genome</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="570" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="577" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
577
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<pre style="margin: 0;">+<span id="LC577" class="line" lang="c"> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stderr</span><span class="p">,</span><span class="s" style="color: #d14;">" -C: assume genome is circular (default is linear)</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="570" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="578" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
578
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<pre style="margin: 0;">+<span id="LC578" class="line" lang="c"> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stderr</span><span class="p">,</span><span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="570" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="579" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
579
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<pre style="margin: 0;">+<span id="LC579" class="line" lang="c"> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stderr</span><span class="p">,</span><span class="s" style="color: #d14;">" -r: Random number generator seed (default is process id).</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="580" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
580
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC580" class="line" lang="c"> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stderr</span><span class="p">,</span><span class="s" style="color: #d14;">" -w: Print -w bp per line (default is 80).</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="570" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="581" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
581
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC581" class="line" lang="c"> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stderr</span><span class="p">,</span><span class="s" style="color: #d14;">" -U: Use upper case for DNA (default is lower case).</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="582" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
582
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC582" class="line" lang="c"> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stderr</span><span class="p">,</span><span class="s" style="color: #d14;">" -M: create a map file that indicates where every read was sampled</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="570" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
570
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<td class="diff-line-num new_line" data-linenumber="583" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
583
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<pre style="margin: 0;"> <span id="LC583" class="line" lang="c"> <span class="n" style="color: #333;">exit</span> <span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">);</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="571" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
571
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<td class="diff-line-num new_line" data-linenumber="584" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
584
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<pre style="margin: 0;"> <span id="LC584" class="line" lang="c"> <span class="p">}</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="572" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
572
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<td class="diff-line-num new_line" data-linenumber="585" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
585
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<pre style="margin: 0;"> <span id="LC585" class="line" lang="c"> <span class="p">}</span></span>
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