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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/circos">Debian Med / circos</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/circos/commit/eb66def8c19a26c6f7633d987502fd8337a485a3">eb66def8</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-28T06:11:10Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Standards-Version will be bumped to latest in routine-update
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/circos/commit/f01dd1ac026b00e7502756d7209f4361b4b87c06">f01dd1ac</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-28T06:11:47Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debhelper 11
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/circos/commit/5eb9f1c3c69d9185dfb4ba27101c97146e0e9243">5eb9f1c3</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-28T06:11:54Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Standards-Version: 4.2.1
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/circos/commit/7e67b334d2ad5689219fb610c84f4854754f3223">7e67b334</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-28T06:36:50Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix Perl interpreter path
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/circos/commit/2311dc4e77cbd321693f04aeb63c77536f3f522c">2311dc4e</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-28T06:37:51Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Remove unusued patch
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/circos/commit/d02d1fe538d73de262005b22f575b443c2a6330e">d02d1fe5</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-28T06:41:08Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
</li>
</ul>
<h4>5 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
debian/compat
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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</li>
<li class="file-stats">
<a href="#492b9cad973cec22fe663f2dda0c122e0a297ed6">
<span class="deleted-file">
−
debian/patches/fix_reading_default_tracks.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/circos/compare/936dcb4ed90bea369e35758509eacd13002aba27...d02d1fe538d73de262005b22f575b443c2a6330e#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">circos (0.69.6+dfsg-2) <span class="idiff left right">UNRELEASED</span>; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">circos (0.69.6+dfsg-2) <span class="idiff left right">unstable</span>; urgency=medium</span>
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext"> <span class="idiff left right">* Team upload.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> <span class="idiff left right">[ Dylan Aïssi ]</span></span>
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> * Add missing dependency: libsvg-perl.</span>
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"> * Update VCS to salsa.</span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> * Standards-Version: 4.1.4 (no changes needed).</span>
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> -- Dylan Aïssi <bob.dybian@gmail.com> Fri, 18 May 2018 21:51:04 +0200</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> [ Andreas Tille ]</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> * debhelper 11</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> * Standards-Version: 4.2.1</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> * Fix Perl interpreter path</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Sun, 28 Oct 2018 07:38:39 +0100</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext">circos (0.69.6+dfsg-1) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"></span>
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<li id="78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
<a href="https://salsa.debian.org/med-team/circos/compare/936dcb4ed90bea369e35758509eacd13002aba27...d02d1fe538d73de262005b22f575b443c2a6330e#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4"><strong>debian/compat</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">1<span class="idiff left right">0</span></span></pre>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">1<span class="idiff left right">1</span></span></pre>
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<a href="https://salsa.debian.org/med-team/circos/compare/936dcb4ed90bea369e35758509eacd13002aba27...d02d1fe538d73de262005b22f575b443c2a6330e#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4,8 +4,8 @@ Uploaders: Olivier Sallou <osallou@debian.org>,</td>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> Andreas Tille <tille@debian.org></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">Section: science</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">Priority: optional</span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext">Build-Depends: debhelper (>= 1<span class="idiff left right">0</span>)</span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">1.4</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">Build-Depends: debhelper (>= 1<span class="idiff left right">1~</span>)</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">2.1</span></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/circos</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/circos.git</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">Homepage: http://circos.ca/</span>
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<li id="492b9cad973cec22fe663f2dda0c122e0a297ed6">
<a href="https://salsa.debian.org/med-team/circos/compare/936dcb4ed90bea369e35758509eacd13002aba27...d02d1fe538d73de262005b22f575b443c2a6330e#492b9cad973cec22fe663f2dda0c122e0a297ed6"><strong>debian/patches/fix_reading_default_tracks.patch</strong>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="diff">Author: Tamas Deak <deatomium@gmail.com></span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="diff">Last-Updated: 2016-02-19</span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="diff">Description: Fix error when reading default tracks</span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="diff">Bug: https://bugs.launchpad.net/ubuntu/+source/circos/+bug/1547519</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="diff">Forwarded: not-needed</span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="diff"></span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/etc/housekeeping.conf</span></span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/etc/housekeeping.conf</span></span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -255,7 +255,7 @@</span></span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="diff"> data_out_of_range = trim,warn # </span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="diff"> # Track default directory</span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-track_defaults = etc/tracks</span></span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+track_defaults = /etc/circos/tracks</span></span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="diff"> # Use round brushes for elements with thickness greater than round_brush_min_thickness?</span>
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17
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="diff"> round_brush_use = yes</span></pre>
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<a href="https://salsa.debian.org/med-team/circos/compare/936dcb4ed90bea369e35758509eacd13002aba27...d02d1fe538d73de262005b22f575b443c2a6330e#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -15,6 +15,9 @@ override_dh_install:</td>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="make"> find debian/circos <span class="nt" style="color: navy;">-type</span> f | xargs <span class="nb" style="color: #0086b3;">sed</span> <span class="nt" style="color: navy;">-i</span> <span class="s1" style="color: #d14;">'s/include etc/include \/usr\/share\/circos\/etc/g'</span></span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="make"> find debian/circos <span class="nt" style="color: navy;">-type</span> f | xargs <span class="nb" style="color: #0086b3;">sed</span> <span class="nt" style="color: navy;">-i</span> <span class="s1" style="color: #d14;">'s/include fonts/include \/usr\/share\/circos\/fonts/g'</span></span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="make"> find debian/circos <span class="nt" style="color: navy;">-type</span> f | xargs <span class="nb" style="color: #0086b3;">sed</span> <span class="nt" style="color: navy;">-i</span> <span class="s1" style="color: #d14;">'s/include tiles/include \/usr\/share\/circos\/tiles/g'</span></span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="make"> <span class="k" style="font-weight: 600;">for </span>pl <span class="k" style="font-weight: 600;">in</span> <span class="sb" style="color: #d14;">`</span><span class="nb" style="color: #0086b3;">grep</span> <span class="nt" style="color: navy;">-Rl</span> <span class="s1" style="color: #d14;">'#![[:space:]]*/usr/bin/env[[:space:]]\+perl'</span> debian/<span class="k" style="font-weight: 600;">*</span>/<span class="k" style="font-weight: 600;">*</span><span class="sb" style="color: #d14;">`</span> <span class="p">;</span> <span class="k" style="font-weight: 600;">do</span> <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="make"> <span class="nb" style="color: #0086b3;">sed</span> <span class="nt" style="color: navy;">-i</span> <span class="s1" style="color: #d14;">'1s?^#![[:space:]]*/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?'</span> <span class="nv" style="color: teal;">$$</span><span class="o" style="font-weight: 600;">{</span>pl<span class="o" style="font-weight: 600;">}</span> <span class="p">;</span> <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="make"> <span class="k" style="font-weight: 600;">done</span></span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="make"></span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="make"><span class="nl">override_dh_installman</span><span class="o" style="font-weight: 600;">:</span></span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="make"> pod2man bin/circos <span class="o" style="font-weight: 600;">></span> <span class="nv" style="color: teal;">$(CURDIR)</span>/debian/circos/usr/share/man/man1/circos.1</span></pre>
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