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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/muscle">Debian Med / muscle</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/muscle/commit/b1cb7b511206e26f9f2bdbd9dfc6979dac07d900">b1cb7b51</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-29T08:31:31Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Review watch file
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/muscle/commit/34e942a2026f8c57dbd2adde549fbea4a5693b2f">34e942a2</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-29T08:35:27Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version (no need to exclude any files any more)
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/muscle/commit/e0bade90d772d504f0a7c16b2872a0cb33ff3a7f">e0bade90</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-29T08:36:22Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 3.8.1551</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/muscle/commit/165a8949d64b96dd1d0b1b6d0c8be4e106a0d9e8">165a8949</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-29T08:36:23Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/3.8.1551'
Update to upstream version '3.8.1551'
with Debian dir 5cdd674590e10b5b4b911ed586ff5584251c3e72</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/muscle/commit/453c3bb5fb1fa120e437b78ed9a956e04c45e319">453c3bb5</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-29T08:37:27Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Remove useless get-orig-source target
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/muscle/commit/39a516be2f928672341243e57ce4acf55843c235">39a516be</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-29T08:39:04Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Source is now in main dir
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/muscle/commit/b97472bf21aa3f53b77c888f826e1a6097a33cba">b97472bf</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-29T08:42:23Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Adapt patches
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/muscle/commit/7ffba89059a378970e7b4af598b4321b097e6bc0">7ffba890</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-29T08:42:41Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debhelper 11
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/muscle/commit/1affb9ba2756ad687f01d0778ea3ce82e112de8c">1affb9ba</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-29T08:42:53Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Point Vcs fields to salsa.debian.org
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/muscle/commit/b0aaeebca337240e6d64303402e7adec7bb1222e">b0aaeebc</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-29T08:42:53Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Standards-Version: 4.2.1
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/muscle/commit/d4f3d94a477c734d9d9414ea71ba7be9bc1472f0">d4f3d94a</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-29T08:42:54Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Secure URI in copyright format
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/muscle/commit/84e6b288e07ae3880ea87ea00de9fb4e1e84a85c">84e6b288</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-29T08:42:54Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Remove trailing whitespace in debian/changelog
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/muscle/commit/1d014ddc455644791a06757c8d9686552629e75d">1d014ddc</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-29T08:44:26Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
<span class="new-file">
+
Makefile
</span>
</a>
</li>
<li class="file-stats">
<a href="#3b96b4551a34f668f3b900e730a13f619cf7e0da">
src/aligngivenpath.cpp
→
aligngivenpath.cpp
</a>
</li>
<li class="file-stats">
<a href="#f782746437bb5d35ea10349bac79f735d276cf86">
src/aligngivenpathsw.cpp
→
aligngivenpathsw.cpp
</a>
</li>
<li class="file-stats">
<a href="#c919f9fa9cb90eb45b14f774824aea98275259b1">
src/aligntwomsas.cpp
→
aligntwomsas.cpp
</a>
</li>
<li class="file-stats">
<a href="#ae5c116603c0e86cebb9e3892da3f93c2b1f4dd1">
src/aligntwoprofs.cpp
→
aligntwoprofs.cpp
</a>
</li>
<li class="file-stats">
<a href="#d9a7cd2e086dc47ba14e1727adf8d07f3ed57b1a">
src/aln.cpp
→
aln.cpp
</a>
</li>
<li class="file-stats">
<a href="#3877e9b529dde174d0a34819bf99e4ce7e2ed55c">
src/alpha.cpp
→
alpha.cpp
</a>
</li>
<li class="file-stats">
<a href="#4d1f5b4df064400d7ab5e763cd1a1e1d1f610a68">
src/alpha.h
→
alpha.h
</a>
</li>
<li class="file-stats">
<a href="#b3d0f5dd164daf9d1819fa7b19066381acf02a3a">
src/anchors.cpp
→
anchors.cpp
</a>
</li>
<li class="file-stats">
<a href="#33c1567bf0ea1ae621dcd8cd5fe07c491a1311e3">
src/bittraceback.cpp
→
bittraceback.cpp
</a>
</li>
<li class="file-stats">
<a href="#92c8da56d0151b4270cbed7ad550682559a1b35d">
src/blosum62.cpp
→
blosum62.cpp
</a>
</li>
<li class="file-stats">
<a href="#8292326e5b70cdb0778a7d5249dff8479ef6f4a4">
src/blosumla.cpp
→
blosumla.cpp
</a>
</li>
<li class="file-stats">
<a href="#ae880e4484d2e7869ee09c8c5499f14f61e37731">
src/clust.cpp
→
clust.cpp
</a>
</li>
<li class="file-stats">
<a href="#c5a9a3ba328dfa5190c7286e22fff5c7e8ad60da">
src/clust.h
→
clust.h
</a>
</li>
<li class="file-stats">
<a href="#4cf85ab112fd830428a7648b5a36dd856f102396">
src/cluster.cpp
→
cluster.cpp
</a>
</li>
<li class="file-stats">
<a href="#ecf12b2c40b9792d8ef0cc30a9b88f7b46316dab">
src/cluster.h
→
cluster.h
</a>
</li>
<li class="file-stats">
<a href="#366f924e3ead02b6f72eacb47301b600d1c13cf4">
src/clustset.h
→
clustset.h
</a>
</li>
<li class="file-stats">
<a href="#763d9ea490e1a6a31f315f548dd37ac2d624c3e2">
src/clustsetdf.h
→
clustsetdf.h
</a>
</li>
<li class="file-stats">
<a href="#50a09fdf8bdbcfd0334fb1d7422a4dcc66e2b396">
src/clustsetmsa.h
→
clustsetmsa.h
</a>
</li>
<li class="file-stats">
<a href="#aebfeb6fc67d0c81c9a9634641e63835f0e7e1c0">
src/clwwt.cpp
→
clwwt.cpp
</a>
</li>
<li class="file-stats">
<a href="#e2971a1d10a4508eb333c18afcecbb743efe5a13">
src/color.cpp
→
color.cpp
</a>
</li>
<li class="file-stats">
<a href="#e6f177a3d28b75077d0ab8935013866c7e4a4de4">
src/cons.cpp
→
cons.cpp
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
debian/compat
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
</a>
</li>
<li class="file-stats">
<a href="#1de45730ac84ef327179dc97c77441c4c33aa3e9">
debian/muscle.install
</a>
</li>
<li class="file-stats">
<a href="#e96b1662fca975f65d00483fd49adc358032eb3f">
debian/patches/01_Fix_FTBFS_Hurd.patch
</a>
</li>
<li class="file-stats">
<a href="#dc053169aa7f9d53c38ea6df4723f4380e6fd5cb">
debian/patches/makefile.patch
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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