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<h3>
Alexandre Mestiashvili pushed to branch master
at <a href="https://salsa.debian.org/med-team/subread">Debian Med / subread</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/subread/commit/edf71ef6d8bc38598338b79badc25eb81974be2f">edf71ef6</a></strong>
<div>
<span>by Alexandre Mestiashvili</span>
<i>at 2018-10-11T11:51:36Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.6.3+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/subread/commit/97a34acc042c67df3ea6ca090a2272d64fdd88a1">97a34acc</a></strong>
<div>
<span>by Alexandre Mestiashvili</span>
<i>at 2018-10-11T11:52:34Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/1.6.3+dfsg'
Update to upstream version '1.6.3+dfsg'
with Debian dir 95a826160a2bebb9f061d693448beecf9d759373</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/subread/commit/930fbc8fce7825c5c7468b7e4991436d9814b96a">930fbc8f</a></strong>
<div>
<span>by Alexandre Mestiashvili</span>
<i>at 2018-10-11T12:01:49Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">DH_VERBOSE=1, check for nocheck in DEB_BUILD_OPTIONS
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/subread/commit/e01266168a9746e13e6912d4fc5e4595a799e55e">e0126616</a></strong>
<div>
<span>by Alexandre Mestiashvili</span>
<i>at 2018-10-11T12:04:54Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Bump Policy to 4.2.1
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/subread/commit/069546a9881f94a6cfb2335ddabd6078c20dc1e9">069546a9</a></strong>
<div>
<span>by Alexandre Mestiashvili</span>
<i>at 2018-10-11T12:13:22Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refresh patches
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/subread/commit/47f9bf9be9a0a09bc79b3ffd01923e74a0361fc2">47f9bf9b</a></strong>
<div>
<span>by Alexandre Mestiashvili</span>
<i>at 2018-10-11T12:33:39Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New binary detectionCall, remove dropped by upstream coverageCount
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/subread/commit/0d299f5cd5bfad9cfdc19903697569ab4c559d01">0d299f5c</a></strong>
<div>
<span>by Alexandre Mestiashvili</span>
<i>at 2018-10-29T08:41:59Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update changelog
Gbp-Dch: Ignore
</pre>
</li>
</ul>
<h4>29 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#e5dd98c113be2752e1d0ece7dd39cb253d83216c">
debian/patches/arch_specific_flags.patch
</a>
</li>
<li class="file-stats">
<a href="#fb9e8d937d72f3a26397728040ed9ba05f3aea89">
debian/patches/fix_ftbfs_kfreebsd.patch
</a>
</li>
<li class="file-stats">
<a href="#738bfe9eb140bee362e519ae990e19d7391f9b5f">
debian/patches/typo.patch
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
<li class="file-stats">
<a href="#6d3faf73fa0c7b80be9cc3c2d1b06a1be79b0425">
debian/subread.install
</a>
</li>
<li class="file-stats">
<a href="#9b9715372d0cd39d21711a077b6f2ae42fb45135">
doc/SubreadUsersGuide.tex
</a>
</li>
<li class="file-stats">
<a href="#7079f81404dcaadc0154c53a419b2d1cb5f253e6">
src/HelperFunctions.c
</a>
</li>
<li class="file-stats">
<a href="#c5bb90e41c35273ab5b21defedfdb01254fbc8f6">
src/Makefile.FreeBSD
</a>
</li>
<li class="file-stats">
<a href="#c1b8d333291fcba8482e6874c5a8cf61b565242c">
src/Makefile.Linux
</a>
</li>
<li class="file-stats">
<a href="#0f0909639769aa3e7d493b832c416371ba8f6089">
src/Makefile.MacOS
</a>
</li>
<li class="file-stats">
<a href="#03b53aa7b28dab0125f2bb23f06f341cab6c608d">
src/SNPCalling.c
</a>
</li>
<li class="file-stats">
<a href="#de13a8a387b0f71a691e5d23cf74468d6ad7c0a0">
src/core-bigtable.c
</a>
</li>
<li class="file-stats">
<a href="#296b4814ae931def4e82a8f84e22f6c24f5b3b14">
src/core-indel.c
</a>
</li>
<li class="file-stats">
<a href="#269c5079f32c711431ad058d1e3ac63987f29255">
src/core-indel.h
</a>
</li>
<li class="file-stats">
<a href="#ecc92c74c51f8b1692fd1bd13b9657e456522c0a">
src/core-interface-aligner.c
</a>
</li>
<li class="file-stats">
<a href="#431a9a7f741eae0019b2785bf4ae504ca6fe0271">
src/core-interface-subjunc.c
</a>
</li>
<li class="file-stats">
<a href="#d7c9610d0bb39f36045810aea42dfc930a2d041f">
src/core-junction.c
</a>
</li>
<li class="file-stats">
<a href="#a26ea438a2b6aee04f419d17c87da7e9b997e7ae">
src/core.c
</a>
</li>
<li class="file-stats">
<a href="#3ff152fe6bda3f5dfee9715abff394de66921551">
src/core.h
</a>
</li>
<li class="file-stats">
<a href="#cb694fb45e0f09c24c9a2441c1640b76efdf7b88">
src/coverage_calc.c
</a>
</li>
<li class="file-stats">
<a href="#18d5c843fdde01c811087dacdcf7dbe1f38af4d3">
src/gene-algorithms.c
</a>
</li>
<li class="file-stats">
<a href="#db883abc086707d455e41cc6745055f2475bcc7f">
src/index-builder.c
</a>
</li>
<li class="file-stats">
<a href="#af240e90f84ee342e36f1a8ee0eb08f1a4b16a3d">
src/input-files.c
</a>
</li>
<li class="file-stats">
<a href="#6907133cceb8c785482dac4a3125dbff95a3d8e2">
src/input-files.h
</a>
</li>
<li class="file-stats">
<a href="#425bd1a4976c5c2d9304588f9677dde9f41fb5b7">
src/longread-one/LRMconfig.h
</a>
</li>
<li class="file-stats">
<a href="#e0a41fae3dcf6b8f6387090ee96ebdd7376261bd">
src/longread-one/LRMfile-io.c
</a>
</li>
<li class="file-stats">
<a href="#4d075f9c8f48325589258b0e43848200e65828fb">
src/longread-one/LRMsorted-hashtable.c
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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