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<h3>
Andreas Tille pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/phylip">Debian Med / phylip</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/phylip/commit/cbcb3b1da2812961513aec636569afef27b8957f">cbcb3b1d</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-29T10:43:02Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 3.697+dfsg</pre>
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<h4>3 changed files:</h4>
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<a href="#f86aa6febe2d07b680a0bc82803775c03f9076fe">
doc/main.html
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<a href="#81e476f8f2b45c94d5324d42f05eda175e56a6e2">
src/cons.c
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<a href="#b06689b063d2329f51c8d0117e5b06a454630408">
src/phylip.h
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<h4>Changes:</h4>
<li id="f86aa6febe2d07b680a0bc82803775c03f9076fe">
<a href="https://salsa.debian.org/med-team/phylip/commit/cbcb3b1da2812961513aec636569afef27b8957f#f86aa6febe2d07b680a0bc82803775c03f9076fe"><strong>doc/main.html</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -16,9 +16,9 @@</td>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="html"><span class="nt" style="color: navy;"><P></span></span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="html"><span class="nt" style="color: navy;"><IMG</span> <span class="na" style="color: teal;">SRC=</span><span class="s" style="color: #d14;">"phylip.gif"</span> <span class="na" style="color: teal;">ALT=</span><span class="s" style="color: #d14;">"PHYLIP Logo"</span><span class="nt" style="color: navy;">></span></span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="html"><span class="nt" style="color: navy;"><P></span></span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="html"><span class="nt" style="color: navy;"><H3></span>Version 3.69<span class="idiff left right">6</span><span class="nt" style="color: navy;"></H3></span></span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="html"><span class="nt" style="color: navy;"><H3></span>Version 3.69<span class="idiff left right">7</span><span class="nt" style="color: navy;"></H3></span></span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="html"><span class="nt" style="color: navy;"><H3></span><span class="idiff left right">September, 2014</span><span class="nt" style="color: navy;"></H3></span></span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="html"><span class="nt" style="color: navy;"><H3></span><span class="idiff left right">December, 2017</span><span class="nt" style="color: navy;"></H3></span></span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="html"><span class="nt" style="color: navy;"><H2></span>by Joseph Felsenstein<span class="nt" style="color: navy;"></H2></span></span>
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<li id="81e476f8f2b45c94d5324d42f05eda175e56a6e2">
<a href="https://salsa.debian.org/med-team/phylip/commit/cbcb3b1da2812961513aec636569afef27b8957f#81e476f8f2b45c94d5324d42f05eda175e56a6e2"><strong>src/cons.c</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="941" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -941,8 +941,8 @@ void rehash()</td>
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<pre style="margin: 0;"> <span id="LC941" class="line" lang="c"> <span class="n" style="color: #333;">memcpy</span><span class="p">(</span><span class="n" style="color: #333;">s</span><span class="p">,</span> <span class="n" style="color: #333;">grouping</span><span class="p">[</span><span class="n" style="color: #333;">old_index</span><span class="p">],</span> <span class="n" style="color: #333;">setsz</span> <span class="o" style="font-weight: 600;">*</span> <span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="n" style="color: #333;">group_type</span><span class="p">));</span></span>
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942
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<pre style="margin: 0;"> <span id="LC942" class="line" lang="c"> <span class="n" style="color: #333;">ss</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">.</span><span class="mi" style="color: #099;">0</span><span class="p">;</span></span>
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943
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943
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<pre style="margin: 0;"> <span id="LC943" class="line" lang="c"> <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span><span class="n" style="color: #333;">j</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">j</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">setsz</span><span class="p">;</span> <span class="n" style="color: #333;">j</span><span class="o" style="font-weight: 600;">++</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC944" class="line" lang="c"> <span class="n" style="color: #333;">ss</span> <span class="o" style="font-weight: 600;">+=</span> <span class="n" style="color: #333;">s</span><span class="p">[</span><span class="n" style="color: #333;">j</span><span class="p">]</span> <span class="cm" style="color: #998; font-style: italic;">/* pow(2, SETBITS*j)*/</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC945" class="line" lang="c"> <span class="n" style="color: #333;">temp</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">ss</span><span class="idiff left"> </span><span class="o" style="font-weight: 600;"><span class="idiff">*</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff right">smult</span></span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC944" class="line" lang="c"> <span class="n" style="color: #333;">ss</span> <span class="o" style="font-weight: 600;">+=</span> <span class="n" style="color: #333;">s</span><span class="p">[</span><span class="n" style="color: #333;">j</span><span class="p">]</span> <span class="o" style="font-weight: 600;"><span class="idiff left">*</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">smult</span></span><span class="p"><span class="idiff">;</span></span><span class="idiff right"> </span><span class="cm" style="color: #998; font-style: italic;">/* pow(2, SETBITS*j)*/</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC945" class="line" lang="c"> <span class="n" style="color: #333;">temp</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">ss</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC946" class="line" lang="c"> <span class="n" style="color: #333;">new_index</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">long</span><span class="p">)(</span><span class="n" style="color: #333;">new_maxgrp</span> <span class="o" style="font-weight: 600;">*</span> <span class="p">(</span><span class="n" style="color: #333;">temp</span> <span class="o" style="font-weight: 600;">-</span> <span class="n" style="color: #333;">floor</span><span class="p">(</span><span class="n" style="color: #333;">temp</span><span class="p">)));</span></span>
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<pre style="margin: 0;"> <span id="LC947" class="line" lang="c"> <span class="n" style="color: #333;">done</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">false</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC948" class="line" lang="c"> <span class="k" style="font-weight: 600;">while</span> <span class="p">(</span><span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">done</span><span class="p">)</span> <span class="p">{</span></span>
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<a href="https://salsa.debian.org/med-team/phylip/commit/cbcb3b1da2812961513aec636569afef27b8957f#b06689b063d2329f51c8d0117e5b06a454630408"><strong>src/phylip.h</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#ifndef _PHYLIP_H_</span></span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#define _PHYLIP_H_</span></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="c"></span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;">/* version 3.69<span class="idiff left right">6</span>.</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;">/* version 3.69<span class="idiff left right">7</span>.</span></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;"> Written by Joseph Felsenstein, Akiko Fuseki, Sean Lamont, Andrew Keeffe,</span></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;"> Mike Palczewski, Doug Buxton and Dan Fineman.</span></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="c"></span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;"> Copyright (c) 1980-201<span class="idiff left right">4</span>, Joseph Felsenstein</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;"> Copyright (c) 1980-201<span class="idiff left right">7</span>, Joseph Felsenstein</span></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;"> All rights reserved.</span></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="c"></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;"> Redistribution and use in source and binary forms, with or without</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -31,7 +31,7 @@</td>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;"> POSSIBILITY OF SUCH DAMAGE.</span></span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;">*/</span></span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="c"></span>
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<pre style="margin: 0;">-<span id="LC34" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#define VERSION "3.69<span class="idiff left right">6</span>"</span></span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#define VERSION "3.69<span class="idiff left right">7</span>"</span></span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="c"></span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;">/* Debugging options */</span></span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;">/* Define this to disable assertions */</span></span>
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