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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/phyutility">Debian Med / phyutility</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/phyutility/commit/d0003147235a0f2eee7195306b92b57dc0bbe7fe">d0003147</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-29T11:51:18Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Point Vcs fields to salsa.debian.org
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/phyutility/commit/4153d91570aaa81f023bdc2243da31708848df43">4153d915</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-29T11:51:18Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Standards-Version: 4.2.1
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/phyutility/commit/cff42e09edd0bb827019bbe2485176fd65aa253c">cff42e09</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-29T11:51:19Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Secure URI in copyright format
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/phyutility/commit/80319642e0cf51e3ed604db7c5ea7a5545480483">80319642</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-29T11:51:19Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Drop useless get-orig-source target
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/phyutility/commit/933f5169a17e7db78b2cc87c2a72ad3258ce8e6b">933f5169</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-29T11:51:19Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Remove trailing whitespace in debian/control
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/phyutility/commit/c20ba82a171cdb6a07850323c6ce8ba3ae480ac1">c20ba82a</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-29T11:51:19Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Remove trailing whitespace in debian/copyright
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/phyutility/commit/ac448bd73fb9761f614fc3a52f6847587f628752">ac448bd7</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-29T12:04:12Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
</li>
</ul>
<h4>4 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/phyutility/compare/9a3355f649b7465594de8f58c9120b6187eb1fee...ac448bd73fb9761f614fc3a52f6847587f628752#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">phyutility (2.7.3+dfsg-2) unstable; urgency=medium</span>
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<td class="diff-line-num new new_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Point Vcs fields to salsa.debian.org</span>
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<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * Standards-Version: 4.2.1</span>
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<td class="diff-line-num new new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> * Secure URI in copyright format</span>
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<td class="diff-line-num new new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> * Drop useless get-orig-source target</span>
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<td class="diff-line-num new new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> * Remove trailing whitespace in debian/control</span>
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<td class="diff-line-num new new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> * Remove trailing whitespace in debian/copyright</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Mon, 29 Oct 2018 12:51:19 +0100</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"></span>
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<td class="diff-line-num new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext">phyutility (2.7.3+dfsg-1) unstable; urgency=medium</span>
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<td class="diff-line-num new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"></span>
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<td class="diff-line-num new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> [ Emmanuel Bourg ]</span>
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<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/phyutility/compare/9a3355f649b7465594de8f58c9120b6187eb1fee...ac448bd73fb9761f614fc3a52f6847587f628752#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -8,9 +8,9 @@ Build-Depends: debhelper (>= 11~),</td>
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<td class="diff-line-num new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> javahelper,</span>
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<td class="diff-line-num new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> default-jdk,</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> ant</span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">1.3</span></span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext">Vcs-Browser: https://<span class="idiff left right">anonscm.debian.org/cgit/debian-med/phyutility.git</span></span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext">Vcs-Git: https://<span class="idiff left right">anonscm.debian.org/git/debian-med</span>/phyutility.git</span>
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11
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">2.1</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext">Vcs-Browser: https://<span class="idiff left right">salsa.debian.org/med-team/phyutility</span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext">Vcs-Git: https://<span class="idiff left right">salsa.debian.org/med-team</span>/phyutility.git</span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext">Homepage: http://github.com/blackrim/phyutility</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext">Package: phyutility</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="32" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="32" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -32,7 +32,7 @@ Description: simple analyses or modifications on both phylogenetic trees and dat</td>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> * consensus</span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> * leaf stability</span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> * lineage movement</span>
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="plaintext"> * tree support<span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="plaintext"> * tree support</span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> Data Matrices</span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext"> * concatenate alignments</span>
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<a href="https://salsa.debian.org/med-team/phyutility/compare/9a3355f649b7465594de8f58c9120b6187eb1fee...ac448bd73fb9761f614fc3a52f6847587f628752#adb7f75f79e3bb85eb62912a2904c5d24af878fb"><strong>debian/copyright</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Format: http<span class="idiff left right">s</span>://www.debian.org/doc/packaging-manuals/copyright-format/1.0/</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">Upstream-Name: phyutility</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">Upstream-Contact: Stephen Smith <blackrim@gmail.com></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">Source: https://github.com/blackrim/phyutility/</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="62" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="62" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -62,18 +62,18 @@ License: GPL-3.0+</td>
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<pre style="margin: 0;"> <span id="LC62" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="plaintext">License: LGPL-2.1</span>
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="plaintext"> This library is free software; you can redistribute it and/or modify</span>
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<pre style="margin: 0;">-<span id="LC65" class="line" lang="plaintext"> it under the terms of the GNU Lesser General Public License as<span class="idiff left right"> </span></span>
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<pre style="margin: 0;">-<span id="LC66" class="line" lang="plaintext"> published by the Free Software Foundation; either version 2.1 of the<span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="plaintext"> it under the terms of the GNU Lesser General Public License as</span>
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="plaintext"> published by the Free Software Foundation; either version 2.1 of the</span>
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<pre style="margin: 0;"> <span id="LC67" class="line" lang="plaintext"> License, or (at your option) any later version.</span>
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<pre style="margin: 0;">-<span id="LC69" class="line" lang="plaintext"> This library is distributed in the hope that it will be useful,<span class="idiff left right"> </span></span>
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<pre style="margin: 0;">-<span id="LC70" class="line" lang="plaintext"> but WITHOUT ANY WARRANTY; without even the implied warranty of<span class="idiff left right"> </span></span>
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<pre style="margin: 0;">-<span id="LC71" class="line" lang="plaintext"> MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU<span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="plaintext"> This library is distributed in the hope that it will be useful,</span>
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<pre style="margin: 0;"> <span id="LC72" class="line" lang="plaintext"> Lesser General Public License for more details.</span>
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<pre style="margin: 0;"> <span id="LC73" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;">-<span id="LC74" class="line" lang="plaintext"> You should have received a copy of the GNU Lesser General Public<span class="idiff left right"> </span></span>
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<pre style="margin: 0;">-<span id="LC75" class="line" lang="plaintext"> License along with this library; if not, write to the Free Software<span class="idiff left right"> </span></span>
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<pre style="margin: 0;">-<span id="LC76" class="line" lang="plaintext"> Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston,<span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC74" class="line" lang="plaintext"> You should have received a copy of the GNU Lesser General Public</span>
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<pre style="margin: 0;">+<span id="LC75" class="line" lang="plaintext"> License along with this library; if not, write to the Free Software</span>
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<pre style="margin: 0;">+<span id="LC76" class="line" lang="plaintext"> Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston,</span>
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<pre style="margin: 0;"> <span id="LC77" class="line" lang="plaintext"> MA 02110-1301 USA</span>
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<pre style="margin: 0;"> <span id="LC78" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;"> <span id="LC79" class="line" lang="plaintext"> On Debian systems, the complete text of the GNU General</span>
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<li id="8756c63497c8dc39f7773438edf53b220c773f67">
<a href="https://salsa.debian.org/med-team/phyutility/compare/9a3355f649b7465594de8f58c9120b6187eb1fee...ac448bd73fb9761f614fc3a52f6847587f628752#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -8,5 +8,3 @@ JAVA_HOME=/usr/lib/jvm/default-java</td>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext">override_dh_auto_build:</span>
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9
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9
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> ant compile && ant jar</span>
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10
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10
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"></span></pre>
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11
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext">get-orig-source:</span>
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12
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> uscan --verbose --force-download</span></pre>
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