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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/lofreq">Debian Med / lofreq</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/lofreq/commit/b475ca394d86d6dc7c12ffb77774dd53c29ac88a">b475ca39</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-29T07:56:37Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refresh watch file
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/lofreq/commit/8769fc9e7aeb20802b7fd91533d26a18c90a2a3d">8769fc9e</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-29T07:57:06Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.1.3.1+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/lofreq/commit/85a9163b1bbc87a1a0786067b74837c06fffa08b">85a9163b</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-29T07:57:06Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/2.1.3.1+dfsg'
Update to upstream version '2.1.3.1+dfsg'
with Debian dir e16aa0ecf1f98ac4aa6d46831a663fc53fe84507</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/lofreq/commit/4c652914ab65fc7f7414cb11892fe07bd1c615de">4c652914</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-29T07:57:06Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/lofreq/commit/f29321c5145807bcbdcf2a7ac44e452da7920612">f29321c5</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-29T07:57:07Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debhelper 11
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/lofreq/commit/330fafec3d34babe083cbf59d482872874b2d5c3">330fafec</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-29T08:03:27Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Point Vcs fields to salsa.debian.org
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/lofreq/commit/fae61dc3f910197e33d4ae41e36a9a53d6b005e2">fae61dc3</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-29T08:03:27Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Standards-Version: 4.2.1
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/lofreq/commit/7e997e5dc410a29edc571c8037a6e1258796d51a">7e997e5d</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-29T08:03:28Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Secure URI in copyright format
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/lofreq/commit/247f1c1388ef67b670d6e99dc0ec7936dfe1b234">247f1c13</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-29T08:03:28Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Remove trailing whitespace in debian/copyright
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/lofreq/commit/3e3dfd7aa431244b92f4eff008ecad36233ecab9">3e3dfd7a</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-29T08:08:40Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Cleanup changelog of not yet released package
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#a5cc2925ca8258af241be7e5b0381edf30266302">
.gitignore
</a>
</li>
<li class="file-stats">
<a href="#164b3d4809f98d0458414f1bf9cf3c9dcba16bb5">
<span class="new-file">
+
Changelog
</span>
</a>
</li>
<li class="file-stats">
<a href="#0398ccd0f49298b10a3d76a47800d2ebecd49859">
LICENSE
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#87db583be5c13c1f7b3c958b10e03d67b6a2ca06">
configure.ac
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
debian/compat
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
<li class="file-stats">
<a href="#68ef9f98c01c7eecd4c605cc26048a06f3304b79">
debian/watch
</a>
</li>
<li class="file-stats">
<a href="#5575492baca22d66c91c1a1e6cdf196897f81a46">
devel-doc/dist.README
</a>
</li>
<li class="file-stats">
<a href="#973e317e84b1cade62ee8fab835ac0450e8a601c">
<span class="new-file">
+
snakemake/Snakefile
</span>
</a>
</li>
<li class="file-stats">
<a href="#ba5a665314ba035a21475152c7e6eed4912e1cef">
<span class="new-file">
+
snakemake/cfg.yaml
</span>
</a>
</li>
<li class="file-stats">
<a href="#bb10278d722e63ab0b8ed16a68eb319e9816e1e7">
<span class="new-file">
+
snakemake/data/ref.fa
</span>
</a>
</li>
<li class="file-stats">
<a href="#b9b5091f9e3c03fed5b0929dfb6913441d45ee1f">
<span class="new-file">
+
snakemake/data/regions.bed
</span>
</a>
</li>
<li class="file-stats">
<a href="#4ac9ce649e621f0792f3f52bdfec0a67a089396f">
<span class="new-file">
+
snakemake/data/sample1_R1.fastq.gz
</span>
</a>
</li>
<li class="file-stats">
<a href="#5f4fc444830a22752b40c55a3e22dca66f65c4a1">
<span class="new-file">
+
snakemake/data/sample1_R2.fastq.gz
</span>
</a>
</li>
<li class="file-stats">
<a href="#20acdab58d91a7cffa6a0108460c34a82b6ce74d">
<span class="new-file">
+
snakemake/data/sample2.fastq.gz
</span>
</a>
</li>
<li class="file-stats">
<a href="#7d7a056d2ab1063adb8108830e653af143216736">
<span class="new-file">
+
snakemake/dryrun.sh
</span>
</a>
</li>
<li class="file-stats">
<a href="#950cbdbc840d121911a292e10465c4f4e75a9f71">
<span class="new-file">
+
snakemake/ecoli-cfg.yaml
</span>
</a>
</li>
<li class="file-stats">
<a href="#0324a557e1f6cefac0d373121027540c4b82ec59">
src/lofreq/lofreq_call.c
</a>
</li>
<li class="file-stats">
<a href="#1e0a48c44b0dfdf3be483a1133a0ec83ecde8185">
src/lofreq/lofreq_filter.c
</a>
</li>
<li class="file-stats">
<a href="#bd5a878d975515a170d1c59b0c64c2bdd69fafa0">
src/lofreq/lofreq_main.c
</a>
</li>
<li class="file-stats">
<a href="#ecbbc2b565b0ff1d47c9497388638ecef43effeb">
src/lofreq/lofreq_uniq.c
</a>
</li>
<li class="file-stats">
<a href="#50b746940e9fc465a567fe0d8b508a2d07af0b1b">
src/lofreq/plp.c
</a>
</li>
<li class="file-stats">
<a href="#18ef605f00eaf1b36b7952ab82673b0e004f66dd">
src/lofreq/utils.c
</a>
</li>
<li class="file-stats">
<a href="#84428088b8964546415639ebc67229dedceecfac">
src/lofreq/vcf.c
</a>
</li>
<li class="file-stats">
<a href="#729221385eeac26d8ed2584580190d43f262adcf">
src/lofreq/vcf.h
</a>
</li>
<li class="file-stats">
<a href="#789503f534ec9b074076899cced2a900c57271a4">
src/scripts/lofreq2_call_pparallel.py
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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<p style="font-size: small; color: #777777;">
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