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<h3>
Andreas Tille pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/lofreq">Debian Med / lofreq</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/lofreq/commit/8769fc9e7aeb20802b7fd91533d26a18c90a2a3d">8769fc9e</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-29T07:57:06Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.1.3.1+dfsg</pre>
</li>
</ul>
<h4>30 changed files:</h4>
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<li class="file-stats">
<a href="#a5cc2925ca8258af241be7e5b0381edf30266302">
.gitignore
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<li class="file-stats">
<a href="#164b3d4809f98d0458414f1bf9cf3c9dcba16bb5">
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Changelog
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<li class="file-stats">
<a href="#0398ccd0f49298b10a3d76a47800d2ebecd49859">
LICENSE
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<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
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<li class="file-stats">
<a href="#87db583be5c13c1f7b3c958b10e03d67b6a2ca06">
configure.ac
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<li class="file-stats">
<a href="#5575492baca22d66c91c1a1e6cdf196897f81a46">
devel-doc/dist.README
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<a href="#973e317e84b1cade62ee8fab835ac0450e8a601c">
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snakemake/Snakefile
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<li class="file-stats">
<a href="#ba5a665314ba035a21475152c7e6eed4912e1cef">
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snakemake/cfg.yaml
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snakemake/data/ref.fa
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<li class="file-stats">
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snakemake/data/regions.bed
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<a href="#4ac9ce649e621f0792f3f52bdfec0a67a089396f">
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snakemake/data/sample1_R1.fastq.gz
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<a href="#5f4fc444830a22752b40c55a3e22dca66f65c4a1">
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snakemake/data/sample1_R2.fastq.gz
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<a href="#20acdab58d91a7cffa6a0108460c34a82b6ce74d">
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snakemake/data/sample2.fastq.gz
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<a href="#7d7a056d2ab1063adb8108830e653af143216736">
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snakemake/dryrun.sh
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<li class="file-stats">
<a href="#950cbdbc840d121911a292e10465c4f4e75a9f71">
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snakemake/ecoli-cfg.yaml
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<li class="file-stats">
<a href="#0324a557e1f6cefac0d373121027540c4b82ec59">
src/lofreq/lofreq_call.c
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<a href="#1e0a48c44b0dfdf3be483a1133a0ec83ecde8185">
src/lofreq/lofreq_filter.c
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<li class="file-stats">
<a href="#bd5a878d975515a170d1c59b0c64c2bdd69fafa0">
src/lofreq/lofreq_main.c
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<li class="file-stats">
<a href="#ecbbc2b565b0ff1d47c9497388638ecef43effeb">
src/lofreq/lofreq_uniq.c
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<li class="file-stats">
<a href="#50b746940e9fc465a567fe0d8b508a2d07af0b1b">
src/lofreq/plp.c
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<li class="file-stats">
<a href="#18ef605f00eaf1b36b7952ab82673b0e004f66dd">
src/lofreq/utils.c
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<li class="file-stats">
<a href="#84428088b8964546415639ebc67229dedceecfac">
src/lofreq/vcf.c
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<li class="file-stats">
<a href="#729221385eeac26d8ed2584580190d43f262adcf">
src/lofreq/vcf.h
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<li class="file-stats">
<a href="#789503f534ec9b074076899cced2a900c57271a4">
src/scripts/lofreq2_call_pparallel.py
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<li class="file-stats">
<a href="#ddb4661a252779ffa7611d7a218c33e4032cea4f">
src/scripts/lofreq2_somatic.py
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<li class="file-stats">
<a href="#bddd050c25e392f9b59ec095c0814f7d674f5b9b">
src/tools/Makefile.am
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<li class="file-stats">
<a href="#5419cd3e87088c2ada4de2650b37980758003356">
src/tools/lofreq_star/fdr.py
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<li class="file-stats">
<a href="#f574248af13fcccbc374a030eed2fb5ef1ef90bc">
src/tools/lofreq_star/multiple_testing.py
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<li class="file-stats">
<a href="#f9c057cf097d0c471dede2afeb6671e9e6734897">
src/tools/lofreq_star/utils.py
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<li class="file-stats">
<a href="#bbdbe70ab389feb56d66b92d8d5ff6d43bb252cf">
src/tools/phased_out/lofreq2_filter.py
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<h5>The diff was not included because it is too large.</h5>
</div>
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